BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18930.1
Length=1599
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488776 jgi|Araly1|488776|fgenesh2_kg.6__1910__AT5G18930.1 2204 0.0
> Ahg488776 jgi|Araly1|488776|fgenesh2_kg.6__1910__AT5G18930.1
Length=1553
Score = 2204 bits (1193), Expect = 0.0
Identities = 1447/1564 (93%), Gaps = 39/1564 (2%)
Strand=Plus/Plus
Query 1 ACTACctctctcttctctctctACTCACACACAAACACATTTCCTTTGCCGTGTTCTTCT 60
|||||||||||||||||||| ||| ||||||||||||||||||| || | | | ||||
Sbjct 1 ACTACCTCTCTCTTCTCTCTATACACACACACAAACACATTTCCCCTG-C-T-CTGTTCT 57
Query 61 TGCAACTTCCTCTGTTCTGTTTCATAACATCTTCTTCTGATCTTTGCAATGGCAGTGTCT 120
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 58 TGCAACTTCCTCTGTTCT-AATCGTAACATCTTCTTCTGATCTTTGCAATGGCAGTGTCT 116
Query 121 GGGTTCGAGGGTTTCGAGAAAAGACTCGAACTTCGGTTCTTCGACGATGACAAACCAATC 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 117 GGGTTCGAGGGTTTCGAGAAAAGACTCGAACTTCGGTTCTTCGACGATGATAAACCAATC 176
Query 181 ACCAAAAACCCTATGGGACTCCGTCTAATAGACTTCGAATCTTTAGACCAAGTCTTAAAC 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 ACCAATAACCCTATGGGACTCCGTCTAATAGACTTCGAATCTTTAGACCAAGTCTTAAAC 236
Query 241 GAAGTGCAGTGCACAGTGGTCTCCGCCGTAGCGAATCGTAGCTTCGACGCTTACGTTCTC 300
||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 GAAGTACAGTGTACGGTTGTCTCCGCCGTAGCGAATCGTAGCTTCGACGCTTACGTTCTC 296
Query 301 TCAGAGTCAAGCCTCTTTGTATACCCAACCAAAATCATCATCAAAACATGTGGAACCACG 360
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 297 TCAGAGTCAAGCCTCTTTGTCTACCCAACAAAAATCATCATCAAAACATGTGGTACCACG 356
Query 361 CAACTCCTCAAATCAATCCGACCGTTGATCCATCTCGCACGTAACCTCGGCCTCACGTTA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CAACTCCTCAAATCAATCCGACCGTTGATCCATCTCGCACGTAACCTCGGCCTCACGTTA 416
Query 421 CGCGCGTGTCGCTACTCGCGTGGCAGCTTCATCTTCCCTAAAGCTCAGCCTTTCCCTTAC 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 417 CGCGCGTGTCGCTACTCGCGCGGCAGCTTCATCTTCCCTAAAGCTCAGCCTTTCCCTTAC 476
Query 481 ACAAGCTTCAAAGACGAAGTCATCGTCGTCGAAGAAAGCCT-CCCAAAATCTCTCTGTTA 539
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 477 ACAAGCTTCAAAGACGAAGTCATCGTCGTCGAAGAAAGCCTTCCCAAA-TCTCTCTGTTA 535
Query 540 CCGCAAAGCCTCTGTTATGACGCCTTCTAATAACCCATCACGTGCTTGGCACGTGTTCAC 599
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 536 CCGTAAAGCCTCTGTTATGACGCCTTCTAATAACCCCTCACGTGCTTGGCACGTGTTCAC 595
Query 600 CGCAAGCGCTGACGTGGAATCCGACGAA-CATGTCGTCGTAGTCGAAGTATGTATGACGG 658
|| ||||||||||||||||||||||| || ||||| || || ||||||||||||||||
Sbjct 596 AGCCAGCGCTGACGTGGAATCCGACGAGTCA-GTCGTTGTCGTTGAAGTATGTATGACGG 654
Query 659 AGCTGGACCGAGTCAACGCTCGAAGCTTCTTTAAACGGAAAGGTGACGAGAAAAACAACA 718
|||| ||| ||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 655 AGCTCGACAGAGTCAACGCTCGGAGCTTCTTTAAACGGAAAGGCGACGAGAAAAACAATA 714
Query 719 GCGATTCCGCCGGGAAAGAGATGACGCGGCTCAGTGGTATCGATAACATAAACGCAAACG 778
| |||||||| |||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 715 GTGATTCCGCAGGGAAAGAGATGACGCGGCTGAGCGGTATCGATAACATAAACGCAAACG 774
Query 779 C-TTATATATGCGATTTCGCGTTTGATCCTTGCGGTTACTCGATGAACGGCGTCGACGGT 837
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 CGTT-TATATGCGATTTCGCGTTTGATCCTTGCGGTTACTCGATGAACGGCGTCGACGGC 833
Query 838 GACCGTTACTCAACTATCCACGTAACGCCTGAAGACGGTTTTAGCTACGCGAGCTTCGAG 897
||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 834 GACCGTTACTCAACTATCCACGTCACGCCTGAAGATGGTTTTAGCTACGCCAGCTTCGAG 893
Query 898 TGTGGTTTGTCTCTCTACGACAACGGTCACGAAGATATCTCTGAGGTGTTAAGCCGGGCC 957
|| |||||||| || ||||| | ||||||||||||||||||||||| ||||||||||||
Sbjct 894 TGCGGTTTGTCACTATACGATGATGGTCACGAAGATATCTCTGAGGTTTTAAGCCGGGCC 953
Query 958 ATTGATGTTTTCCGTCCAAGTGACGTCTCGATCGCCACCACTTACGGCGGCGAAGATTAC 1017
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 954 ATTGATGTTTTCCGGCCAAGTGACGTCTCAATCGCCACCACTTACGGTGGCGAGGATTAC 1013
Query 1018 AACCACGAGGTGACTAAGCGCGTGGAGCG-TGTGTTAGCTAAGAAGCTTGATCTTAAGTG 1076
|||||||||||||| ||||| |||||||| | |||| ||||||||||||| |||||||||
Sbjct 1014 AACCACGAGGTGACGAAGCGTGTGGAGCGCT-TGTTGGCTAAGAAGCTTGGTCTTAAGTG 1072
Query 1077 TCGGAGCCGTCTTATGGATGAGTTTCCAGGCTCCGGAACCGTCGTTTATCAGTCCTTCAC 1136
|| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1073 CCGAAGCCGTATTATGGATGAGTTTCCAGGCTCCGGAACCGTCGTTTATCAGTCGTTCAC 1132
Query 1137 GCCTCGTCGGAAATAGGCTTCGCCGGAGGAGTAAAAAAGGAGAAAAT--G-TTTTAATTA 1193
|||||| ||||||||| ||||||||||||||||||||| || |||| | |||||||||
Sbjct 1133 GCCTCGCCGGAAATAGTCTTCGCCGGAGGAGTAAAAAACGAAAAAAAAAGGTTTTAATTA 1192
Query 1194 GGTTTCAATTAGCTTAAAGGAGAAAAAAGAAACAGGTAATGACGTGGAGGGAAATGATTG 1253
||||| |||||||| | |||||||||||||||||||| |||||||||| ||| |||||||
Sbjct 1193 GGTTTAAATTAGCTGAGAGGAGAAAAAAGAAACAGGTGATGACGTGGATGGAGATGATTG 1252
Query 1254 GTTGACTTGGGTTTAAGGAGG-ATATTAAGTGGGAACATAT--GATCATGCACCCCACTT 1310
||||| ||||||||||||||| |||| |||||||||||||| |||||||||||||||||
Sbjct 1253 GTTGATTTGGGTTTAAGGAGGGATAT-AAGTGGGAACATATATGATCATGCACCCCACTT 1311
Query 1311 TGCACTTGTGGCAATGTCACGCCTAAGCATTTTTGAGGTTCAGTGTTGTAGAATTTTAGT 1370
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 TGCGCTTGTGGCAATGTCACGCCTAAGCATTTTTGAGGTTCAGTGTTGTAGAATTTTAGT 1371
Query 1371 GGGGGATGGTAAAAATGGTTTGGTCTGttttttttttgtctttcttttattt-ctt-ctt 1428
|||||| ||||||||||||||||||||||||||| || |||||||||||||| ||| |||
Sbjct 1372 GGGGGAGGGTAAAAATGGTTTGGTCTGTTTTTTTGTT-TCTTTCTTTTATTTTCTTTCTT 1430
Query 1429 -------a-tgtttgttttttatattttcgatttaaattatcttaaatctatatatCAGA 1480
| ||||||||||| |||||||| |||||||||||| ||||||| |||||||||
Sbjct 1431 TTCTTCTAATGTTTGTTTTT-ATATTTTCAATTTAAATTATCCTAAATCTCTATATCAGA 1489
Query 1481 CTGTTGATATACGGTTTTAA--T------CGTTCTTACTTTATATGGTTACAAATTCATT 1532
|||||||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 1490 CTGTTGATATACGGTTTTAAACTTTTAATCGGTCTTACTTTATATGGTTACAAATTCATT 1549
Query 1533 CACC 1536
||||
Sbjct 1550 CACC 1553
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59915955385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5