BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18940.1
Length=1481
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941426 jgi|Araly1|941426|scaffold_601970.1 1753 0.0
> Ahg941426 jgi|Araly1|941426|scaffold_601970.1
Length=1081
Score = 1753 bits (949), Expect = 0.0
Identities = 1039/1083 (96%), Gaps = 4/1083 (0%)
Strand=Plus/Plus
Query 166 GCGGAATCCGAATCTGATCTCATGTCTTTCTCATTCTTCAAGCCCTCTAGGCCTAAAACG 225
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1 GCGGAATCCGAATCTGATCTCATGTCCTTCTCCTTCTTCAAGCCCTCTAGGCCTAAAACG 60
Query 226 CCTCAAGAGGTTGTTAAAGCCATCAGAGACAGTCTTATGGCTCTCGACACCAAGACCGTC 285
||||||||||| |||||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct 61 CCTCAAGAGGTCGTTAAAGCGATCAAAGATAGTCTTATGGCTCTCGACACCAAGACCGTC 120
Query 286 GTCGAAGTTAAAGCCCTCGAGAAGGCTTTGGAAGAAGTTGAGAAGAATTTTTCTTCTCTA 345
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 GTCGAAGTTAAAGCCCTCGAGAAGGCTTTGGAAGAAGTTGAGAAGAATATTTCTTCTCTG 180
Query 346 AGAGGAATACTTTCTGGAGATGGTG-AGACTGAACCAAATGCTGATCAGGCTGTACAGTT 404
|||||||| |||||||||||||||| || |||||||||||||||||| ||| |||| ||
Sbjct 181 AGAGGAATGCTTTCTGGAGATGGTGAAG-TTGAACCAAATGCTGATCAAGCTCTACAATT 239
Query 405 AGCATTAGAGTTTTGCAAAGAAGATGTTGTCTCTCTTGTTATTCATAAGCTTCATATTTT 464
||||||||||||||||||||||||||| | |||||||||||||||||||| || |||||
Sbjct 240 AGCATTAGAGTTTTGCAAAGAAGATGTCATTTCTCTTGTTATTCATAAGCTACACATTTT 299
Query 465 GGGATGGGAAACAAGAAAAGATTTACTGCATTGTTGGTCTATCCTGTTGAAGCAAAAGGT 524
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 300 GGGATGGGAAGCAAGAAAAGATTTACTGCATTGTTGGTCTATCTTGTTGAAGCAAAAAGT 359
Query 525 CGGCGACACTTATTGCTGTGTGCAATACTTTGAAGAGCATTTTGAGTTGCTTGACTCTTT 584
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 360 CGGCGAGACTTATTGCTGTGTGCAATACTTTGAAGAGCATTTCGAGTTGCTTGACTCTTT 419
Query 585 AGTTGTATGCTATGACAATAAGGAGATTGCTCTGCATTGTGGAAGTATGCTTAGGGAATG 644
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 420 GGTTGTATGCTATGACAACAAGGAGATTGCTCTGCATTGTGGAAGTATGCTTCGGGAATG 479
Query 645 CATTAAATTCCCAAGTCTTGCTAAGTACATATTAGAGTCTGCCTGCTTTGAGTTATTCTT 704
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 480 CATTAAATTCCCAAGTCTTGCTAAGTACATTTTAGAGTCTGCCTGCTTTGAGTTATTCTT 539
Query 705 CAAGTTCGTGGAATTGCCAAACTTTGATGTTGCTTCTGATGCATTTTCAACATTCAAGGA 764
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CAAGTTTGTGGAGTTGCCAAACTTTGATGTTGCTTCTGATGCATTTTCAACATTCAAGGA 599
Query 765 TCTTCTTACAAAACATGACTCTGTAGTCTCTGAGTTTCTCACCTCTCATTACACTGAGTT 824
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 600 TCTTCTTACAAAACATGACTCTGTCGTCTCTGAGTTTCTCACCTCTCATTACAGTGAGTT 659
Query 825 CTTTGATGTTTATGAAAGACTTTTGACATCTTCAAATTATGTGACGAGAAGACAATCACT 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CTTTGATGTTTATGAAAGACTTTTGACATCTTCAAATTATGTGACGAGAAGACAATCACT 719
Query 885 GAAGCTTCTCTCGGATTTCCTGTTGGAGCCTCCAAATTCCCACATAATGAAGAAATTCAT 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GAAGCTTCTCTCGGATTTCCTGTTGGAGCCTCCAAATTCCCACATAATGAAGAAATTCAT 779
Query 945 CTTAGAAGTTCGTTATTTGAAAGTCATAATGACACTTTTGAAGGACTCGAGCAAGAACAT 1004
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 CTTAGAAGTTCGTTATTTGAAAGTCATAATGACACTTTTGAAGGATTCGAGCAAGAACAT 839
Query 1005 TCA-GATATCAGCCTTCCATATATTTAAGATCTTTGTTGCGAATCCTAATAAGCCGCAAG 1063
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCAAG-TATCAGCCTTCCATATATTTAAGATCTTTGTTGCGAATCCTAATAAGCCGCAAG 898
Query 1064 AAGTGAAGATCATATTGGCAAGAAACCATGAGAAATTACTCGAACTCCTCCACGATTTGT 1123
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 899 AAGTGAAGATCATATTGGCAAGAAACCATGAGAAATTACTCGAACTCCTCAACAATTTGT 958
Query 1124 CCCCTGGTAAAGGTTCCGAAGATGATCAATTCGAAGAGGAAAAGGAGCTCATCATCGAGG 1183
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 959 CCCCTGGTAAAGGTTCCGAAGATGATCAATTCGAAGAGGAAAAGGAGCTGATCATCGAGG 1018
Query 1184 AGATTCAAAAATTGTCTGGCTTGAAAAACCTCGAACGTTAAAAATTCTTTTGCCTCCTCA 1243
||||||||||| |||||||||||||||||||||||| ||||| | |||||||||| ||||
Sbjct 1019 AGATTCAAAAAATGTCTGGCTTGAAAAACCTCGAACATTAAACACTCTTTTGCCTGCTCA 1078
Query 1244 TCT 1246
|||
Sbjct 1079 TCT 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421306475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5