BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18950.1
Length=1592
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941427 jgi|Araly1|941427|scaffold_601971.1 2231 0.0
> Ahg941427 jgi|Araly1|941427|scaffold_601971.1
Length=1492
Score = 2231 bits (1208), Expect = 0.0
Identities = 1390/1478 (94%), Gaps = 12/1478 (1%)
Strand=Plus/Plus
Query 1 ATGAGTAGAGGTCAGTCGTATTTGATTAGCTTCTTTAGAAACCGAACTCGAAAGAACCCT 60
|||||||||||||||||||||||||| | |||||| |||||| |||||||| ||||||||
Sbjct 21 ATGAGTAGAGGTCAGTCGTATTTGATCAACTTCTTCAGAAACAGAACTCGACAGAACCCT 80
Query 61 AATACCCAGATACGGAGTCTAACTGTCGAGTCTCGTGATTGTGAATCCAAGCCCGATGAG 120
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 81 AATGCCCAGATACGGAGTCTAACTGTCGAGTCTCGTGATAGTGAATCCAAGCCCGATGAG 140
Query 121 CAAAAATCGGCTGTGAGTTATACGGAGATGGCTAAAACTGTGTCTACCATCATGAGAGAG 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 141 CAAAAATCGGCTGTGAGTTATACGGAGATGGCTAAAACTGTGTCTACGATCATGAGACAG 200
Query 181 AGACAGAGATGGCAACAAACTCTGGTATCTGATTTTCCTTCGTTTGATTTCGCTGATCCT 240
|||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 201 AGACAGAGATGGCAACAAACTCTGGTATCTGATTTTCCCTCGTTCGATTTCGCAGATCCT 260
Query 241 CTGTTTTT-CGGCGAACTGTTGAAATCTCAGAACAATGTTCTGTTTTCTCTGTGGTTTTT 299
||||||| || | |||||||||||||||||||||||||| |||||||| ||||||| ||
Sbjct 261 TTGTTTTTCCGAC-AACTGTTGAAATCTCAGAACAATGTTATGTTTTCTTTGTGGTTCTT 319
Query 300 CCGGTGGTTGTGTTCCAATTATGATTACACACCTGGTCCTGTTTCTTTGAATATTCTCTT 359
|||||||||||||||||| |||||||||||||||| | |||||||||| ||| |||| ||
Sbjct 320 CCGGTGGTTGTGTTCCAACTATGATTACACACCTGATTCTGTTTCTTTAAATCTTCTGTT 379
Query 360 TGGTGCCCTTTTGGATGGAAAAGCCGTGAAAGCTGCGAAGAGTTTTCTCGATACCACTGG 419
|||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 380 TGGTGCTCTTTTGGATGGAAAAGCCGTGAAAGCTGCGAAAAGTTTCCTCGATACCACTGG 439
Query 420 CTTTAAACCTGAGCCTACGTTATTAGAGCAATACGTGAAGTGTCTTAGTGAAGAAGGGTT 479
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 440 TTTTAAACCTGAGCCCACTTTATTAGAGCAATACGTGAAGTGTCTTAGTGAAGAAGGGTT 499
Query 480 GGTAGAGGAAGCTATTGAAGTGTATAATGTACTGAAAGATATGGGAATTAGTTCTTCAGT 539
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 500 GGTAGAGGAAGCTATTGAAGTGTATAATTTACTGAAAGAGATGGGAATTAGTTCTTCAGT 559
Query 540 TGTGACTTGCAATTCTGTTTTATTAGGTTGCTTGAAAGCGAGGAAACTCGATCGGTTTTG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 TGTGACTTGCAATTCTGTTTTATTAGGTTGCTTGAAAGCGAGGAAACTCGATCGGTTTTG 619
Query 600 GGAACTTCATAAGGAAATGGTAGAATCTGAGTTTGATTCAGAGAGGATTCGGTGTTTGAT 659
||||||||||||||||||| || ||||||||||||||| |||| ||||||||||||||||
Sbjct 620 GGAACTTCATAAGGAAATGATAAAATCTGAGTTTGATTTAGAGCGGATTCGGTGTTTGAT 679
Query 660 TCGAGCTTTGTGTGATGGTGGGGATGTTTCAGAAGGCTATGAGCTTTTGAAGCAGGGATT 719
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 680 TCAAGCTTTGTGTGATGGTGGGGAGGTTTCAGAAGGCTATGAGCTTTTGAAGCAGGGATT 739
Query 720 GAAACAAGGGCTTGATCCAGGACA-GTATGTGTATGCTAAACTGATATCTGGATTCTGTG 778
|||||||||||||||||||||||| | |||||||||| |||||||||||||| |||||||
Sbjct 740 GAAACAAGGGCTTGATCCAGGACATG-ATGTGTATGCCAAACTGATATCTGGTTTCTGTG 798
Query 779 AGATTGGGAACTATGCTTGTATGTCGGAGGTTCTTCATACGATGATAGCGTGGAACCATT 838
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 799 AGATTGGGAACTATGCTTGTATATCGGAGATTCTTCATACGATGATAGCGTGGAACCATT 858
Query 839 TCCCGAGTATGTATATATACCAGAAGATTATAAAGGGGTTGTGTATGAATAAGAAGCAGC 898
|||||||||| |||| |||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 859 TCCCGAGTATATATACATACCAGAGGATTATAAAGGGGTTGTGTATGAATAAGAAGGAGC 918
Query 899 TTGAGGCTTATTGTATATTCAAGAATCTGAAAGATAAAGGCTATGCACCTGATAGAGTTG 958
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 919 TTGAGGCTTATTGTATATTCAAGAATCTGAAAGAGAAAGGCTATGCACCTGACAGAGTCG 978
Query 959 TGTATACTACGATGATTCGA-GGATTCTGTGAGAAGGGATGGTTAGGGAGCGCGAGGAAG 1017
|||||||||| ||||| | | |||||||| ||||||||||||||||||||||||||||||
Sbjct 979 TGTATACTACAATGATCC-ATGGATTCTGCGAGAAGGGATGGTTAGGGAGCGCGAGGAAG 1037
Query 1018 CTTTGGTTTGAGATGATAAAGAAAGGG-ATGCGACCAAACGAGTTCGCTTACAATGTGAT 1076
|| |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||
Sbjct 1038 CTGTGGTTTGAGATGATTAA-AAAGGGGATGCGACCAAACGAGTTCGCTTACAATGTGAT 1096
Query 1077 GATACACGGGCATTTTAAAAGAGGCGAAATTTCGCTTGTTGAAGCATTCTACAATGAGAT 1136
||| |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 1097 GATGCACGGGCATTTTAAAATAGGCGAAATTTCGCTTGGTGAAGCATTCTACAGTGAGAT 1156
Query 1137 GTTGAGAAATGGCTATGGAGGAACAATGTTAAGCTGCAATAC-GATGATAAAG-GGTTTC 1194
|||||||||||||||||||| ||||| ||||||||||||||| | |||||| | |||||
Sbjct 1157 GTTGAGAAATGGCTATGGAGAAACAACGTTAAGCTGCAATACAG-TGATAA-GTGGTTTA 1214
Query 1195 TGCTCACATGGAAAATCAGACGAGGCCTTCGAGATTTTCAAGAATATGTCTGAAACCGGG 1254
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1215 TGCTCACATGGAAAATCAGACGAGGCATTCGAGATTTTCAAGAAAATGTCTGAAACAGGG 1274
Query 1255 GTTACACCGAATGCAATCACGTATAACGCTTTGATAAAAGGATTTTGCAAAGAAAACAAG 1314
|||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1275 GTTACACCCAACGCAATCACGTATAACGCTTTGATAAAAGGACTTTGCAAAGAAAACAAG 1334
Query 1315 GTTGAGAAAGGCTTGAAACTATACAAGGAGCTTAAGGCCTTAGGTTTGAAGCCTTCTGGT 1374
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1335 GTTGAGAAAGGCATGAAACTATACAAGGAGCTTAAGGCCTTAGGGCTGAAGCCTTCTGGT 1394
Query 1375 ATGGCATATGCTGCACTAGTGAGAAATCTGAAGATGTCTGATTCTGTTGCAACTTCTTTA 1434
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1395 GCGGCATATGCTGCACTAGTGAGAAATCTGAAGATGTCTGATTCTGTTGGAACTTCTTTA 1454
Query 1435 AATCTAGAGATTGTCTGAAAGAAACTTATTTTTGTTGG 1472
|||||| |||||| |||| ||||||| |||||||||||
Sbjct 1455 AATCTAAAGATTGCCTGACAGAAACTAATTTTTGTTGG 1492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59649323670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5