BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18970.1
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488781 jgi|Araly1|488781|fgenesh2_kg.6__1915__AT5G18970.1 1469 0.0
> Ahg488781 jgi|Araly1|488781|fgenesh2_kg.6__1915__AT5G18970.1
Length=1113
Score = 1469 bits (795), Expect = 0.0
Identities = 1033/1139 (91%), Gaps = 51/1139 (4%)
Strand=Plus/Plus
Query 1 ACAGAGATCTTGTGATCATCCCAAGACAAAACCAGAGAAAAAGACCTGTCT-Gttttttt 59
|||||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||
Sbjct 1 ACAGAGATCTTGTGATTATCCCAAGACAGAACCAGAGTAAAAGACCTGTCTGGTTTTTTT 60
Query 60 AAGAAGTCTTTATATTAttttttttGTCGGAGAATCTTATAAG-CATGGCTTCAGGAGGA 118
|||||||| || || ||||||||||||||||||||||| | || ||||||||||||||||
Sbjct 61 AAGAAGTC-TT-TA-TATTTTTTTTGTCGGAGAATCTTGT-AGACATGGCTTCAGGAGGA 116
Query 119 TCAAAGTCGGCAGCTTTCATGCTTCTGATGCTGAATCTTGGTCTCTATTTCGTCATCACC 178
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 117 TCAAAGTCGGCAGCTTTCATGCTTCTGATGCTGAATCTTGGTCTTTATTTCGTCGTCACT 176
Query 179 ATCATCGCTTCTTGGGCTGTTAATCACGGCATCGAGAGAACTCGCGAGTCTGCGTCGACA 238
|||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 177 GTCATCGCTTCATGGGCTGTTAATCACGGCATCGAGAGAACTCACGAGTCCGCGTCGACA 236
Query 239 CTGTCACTTCCGGCGAAGATATTCCCGATATACTTCCCGGTGGGGAACATGGCGACCGGT 298
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 237 CTGTCACTTCCGGCGAAGATCTTCCCGATATACTTCCCGGTGGGGAACATGGCGACTGGT 296
Query 299 TTTTTCGTAATATTCACGTTAATCGCCGGCGTCGTCGGAATGGCCACATCACTCACCGGA 358
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTTTTCGTAATATTCACGTTGATCGCCGGCGTCGTCGGAATGGCCACATCACTCACCGGA 356
Query 359 ATCATCAACGTTCTTCAATGGGActctccgaatctccactccgccgcggcttcctctcta 418
||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 357 ATCCTCAACGTTCTTCAGTGGGACTCTCCGAATCTCCACTCCGCCGCGGCTTCCTCTCTC 416
Query 419 atctcctggtctctcactctcctcGCCATGGGATTGGCCTGCAAGGAGATCAACATAGGC 478
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 417 ATATCCTGGTCTCTCACTCTCCTCGCCATGGGATTGGCCTGCAAGGAGATCAACATTGGC 476
Query 479 TGGACCGAAGCCAATCTAAGAACTCTTGAAGTTCTGACTATAATTGTGAGTGCTACTCAG 538
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 477 TGGACCGAAGCCAATCTAAGAACTCTGGAAGTTCTGACTATAATTGTGAGTGCTACTCAG 536
Query 539 TTGTTGTGCACCGGAGCTATTCATGCTGGAGTCGGAGAAACAGTCGCCTCCGGAGAAAGG 598
||| ||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||
Sbjct 537 TTGGTGTGCACCGGAGCTATTCACGCTGGAGTCGGAGAAACAGTCGCCGCCGGTGAAAGG 596
Query 599 CCTCATCTTGGGAGAGTTTGAGTTTCATGATTCTTCTTAAAAGCGGTTTTACATTTGCTT 658
|| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 597 CCACATCTTGGGAGAGTTTGAGTTTCAAGATTCTTCTTAAAAGCGGTTTTTCATTTGCTT 656
Query 659 CAGATCgtgtaatttgtgtgttgtgtcttgtgtgtgt-tt-attcttttgttttgt--t- 713
||||||||||||||||||| |||||||||||||||| || ||||||||||||||| |
Sbjct 657 AAGATCGTGTAATTTGTGTGCTGTGTCTTGTGTGTGTGTTTATTCTTTTGTTTTGTACTG 716
Query 714 t--gATTATTATGATCATGTAAAATGATTAGTTGGTGTGAAGaaaaaaaaGAAAA-GAGA 770
| |||||||| ||| |||||||||||||||||| ||||| ||||||||| |||| ||||
Sbjct 717 TTTGATTATTACGATAATGTAAAATGATTAGTTGATGTGACGAAAAAAAAAAAAAAGAGA 776
Query 771 TTGATAATAATATTACACATTACATTCTTTGCAACAACTTAGCATCAAACGATTTGATAC 830
|||||||||||||||||||||||||||||||| | |||||||||||||||||| |
Sbjct 777 TTGATAATAATATTACACATTACATTCTTTGCTG----T-AGCATCAAACGATTTGATTC 831
Query 831 TCTAAACATG-AT---CTGCATCTTCCCCGCCCACTCCCAAAATAACAAAA--------- 877
|||||||||| || |||||||||| ||||||| |||||||| || ||||
Sbjct 832 TCTAAACATGCATGATCTGCATCTTCTCCGCCCATTCCCAAAAAAAAAAAAAAAAAAAAA 891
Query 878 TCCTAATTCTTATCAGTTCTCACTTTCTCAGATCCTCTGGAACAAGCAACATAAACAAAC 937
|||||||||| ||| ||||||||||||||||||| | |||||||| || |||||||||
Sbjct 892 TCCTAATTCTGATCTGTTCTCACTTTCTCAGATCTTTTGGAACAA-CA---TAAACAAAC 947
Query 938 ACACAAGAGAACAAACATGTCACCGGAAGCGTCGTCATTACAATGATGATTATCATTAGG 997
|||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 948 ACACAAGAGAACGAACATGTCACCGGAAGAGTCGTCATTACTATGATGATTATCATTAGG 1007
Query 998 AACCACAATGAC-CACAAAACTCCCACCT-CCACCACCACCTCTTGCATCGACGATGTTA 1055
|||||||| || | || |||| || | |||||||||||||||||| |||| ||| ||
Sbjct 1008 AACCACAAA-ACTCCCAC--CTCC-AC-TACCACCACCACCTCTTGCAGCGACAATGATA 1062
Query 1056 TCAAAAAGGTTAAGATTAAGTAACGGCGACCAAGACTTTATCTTCTTCAAGGGTAAAGC 1114
||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1063 TCAAAAAGGTTAAGA--------CGGCGACCAAGACTTCATCTTCTTCAAGGGTAAAGC 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41820839949
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5