BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18980.1
Length=2777
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488782 jgi|Araly1|488782|fgenesh2_kg.6__1916__AT5G18980.1 4375 0.0
Ahg477922 jgi|Araly1|477922|fgenesh2_kg.3__623__AT3G06210.1 1823 0.0
> Ahg488782 jgi|Araly1|488782|fgenesh2_kg.6__1916__AT5G18980.1
Length=2753
Score = 4375 bits (2369), Expect = 0.0
Identities = 2646/2778 (95%), Gaps = 26/2778 (1%)
Strand=Plus/Plus
Query 1 AAAATCACGCTTTACTCGTTTTCTCTGCATCATCAACAACTCCTCAAGTCATTACGCACT 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAACTCACGCTTTACTCGTTTTCTCTGCATCATCAACAACTCCTCAAGTCATTACGCACT 60
Query 61 ATTCaaaaactaaaaaagaaagaaagaaagatcgaaaaagtgaaaTTTTCGATTACGGTT 120
|||||||||| || |||| | | |||| | ||||||||| || ||
Sbjct 61 ATTCAAAAAC-------------AA-AAAG-T-G-AAAA--G---TTTTCGATTGCGATT 98
Query 121 TGAGTAGGAAACGAGTAAACACAACAAAAGGTTCACAATGGATTCAAGAAAGTTCGAAGA 180
||||| |||||||||| |||||||| ||||||| | ||||||||||||||||||||||||
Sbjct 99 TGAGTCGGAAACGAGTGAACACAACGAAAGGTTTATAATGGATTCAAGAAAGTTCGAAGA 158
Query 181 AGACGAAGATCGAAGCATTCGTTTACAGGTCTCGGAGCTTCAAAAATTGGAGGAAGCTAT 240
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 159 AGACGAAGATCGAAGCATTCGTTTGCAGGTCTCTGAGCTTCAAAAATTGGAGGAAGCTAG 218
Query 241 AGGCTCAACCGACACCGTTTTTGATCTAAGAAGCAGTATCGAGAAAGGCGACAGCGGCGA 300
||| |||| |||||||||||| |||||||||||||| || ||||||| ||||||||||||
Sbjct 219 AGGTTCAAACGACACCGTTTTCGATCTAAGAAGCAGCATTGAGAAAGTCGACAGCGGCGA 278
Query 301 AACCGCAGACGCAGCTTCTATTTCCTCCGCGACCGCGTTTCGTAGAAAATCAACAGTCCC 360
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 279 AACCGCAGACGCAGCTTCTGTTTCCTCCGCGACCGCGTTTCGTAGAAAATCAACAGTCCC 338
Query 361 AGCTCCGGAGAAGAAGCTAACGCTATTCGCTCTACAACTCGCGATTCTTGAGAAAACCGC 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 339 AGCTCCGGAGAAGAAGCTAACGCTATTCGCTCTCCAACTCGCGATTCTTGAGAAAACCGC 398
Query 421 CACTGGAATCGGAACCCTAGGGTTTATCTGGGCCACGGTGGTTCTTCTCGGCGGCTTCGC 480
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 399 CACCGGAATCGGAACCCTAGGGTTTATCTGGGCCACAGTGGTTCTTCTCGGCGGCTTCGC 458
Query 481 AATCACACTCGACGGTTCCGATTTCTGGTTCATCACCATCATTCTCCTAATCGAAGGTGC 540
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 459 GATCACACTCGACGGTTCCGATTTCTGGTTTATCACCATCATTCTCCTAATCGAAGGTGC 518
Query 541 TCGAATCTTCAGCAGAAGTCACGAGCTCGAGTGGCAACACCAAGCCACGTGGACCGTCGC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TCGAATCTTCAGCAGAAGTCACGAGCTCGAGTGGCAACACCAAGCCACGTGGACCGTCGC 578
Query 601 CGGCGTCGGAATCAGTAGCTTTCGCGCTCTCCGATCAAGCTCAGCCTCGCTTTTCAAAAA 660
||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct 579 CGGCGTCGGAATCAGTAGCTTTCGCGCTCTCCGATCAAGTTCAGCCTCGCTTCTCAAGAA 638
Query 661 TCTAAAACGAATCAGTGATTCAATCTTCAAGCCACGATCGAGAGAAGCGACGGCAAGAGA 720
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 639 TCTAAAACGAATCAGTGCTTCAATCTTCAAGCCACGATCGAGGGAAGCGACGGCAAGAGA 698
Query 721 CTGCGTCGTTCCAGAGACGACGTTAGAGACATGGAAGAACTCAGACGTACCTCTTCTTCC 780
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 699 CTGTGTCGTTCCAGAGACGACGTTAGAGACATGGAAGAACTCAGACGTACCTCTGCTTCC 758
Query 781 ATACGCGAGATGGTTCTTCATTTCCAGTACAGTGAGTCGTCTTCTTTACTGGCTCCAGCT 840
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 759 ATACGCGAGATGGTTCTTTATCTCCAGTACAGTGAGTCGTCTTCTTTACTGGCTCCAACT 818
Query 841 TCTCTCTGCCACGGCTTGTGTAGCTCTATCTTCTTACAAGCTTATTAGGCATAACTATGG 900
||| ||||| ||||||||||| ||||| ||||||||||||||| | ||||||||||||||
Sbjct 819 TCTATCTGCAACGGCTTGTGTTGCTCTGTCTTCTTACAAGCTTGTCAGGCATAACTATGG 878
Query 901 AGATGTTCACAAAGGAGATACGGATAAGAGGAATAGACAGTCTGCTCTCAATATATTCTA 960
||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 879 AGATGTTCATAAAGGAGATACGGATAAGAGGAATAGACAGTCGGCTCTCAACATATTCTA 938
Query 961 CTCGCTCGCCTTTGCTGAGGCGTTGTTGTTTCTTGTGGAGAAAGTTTATTGGGAATGGCA 1020
||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 939 CTCGCTCGCCTTTGCGGAGGCGTTGTTGTTTCTTGTGGAGAAAGTTTACTGGGAGTGGCA 998
Query 1021 AGTCAGTGTTTGTAATTTGCTTGAGAATGTGACTAGAGAATGTGAGTTTGGGGTTAGTGG 1080
||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 999 AGTCAGTGTTTGTAATTTGCTTGAGAATGTGACTAGAGAGTGTGAGTTTGGGGTTACTGG 1058
Query 1081 TTTGGTTTCGATCAAGAGGTTTTTCTATGATTCGTATTCCAAGTGTGTCAATGGGAGTAT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 TTTGGTTTCGATCAAGAGGTTTTTCTATGATTCGTATTCCAAGTGTGTCAATGGGAGTAT 1118
Query 1141 ATTTGATGGTTTGAAGATGGATATAGTGAGCTTTGGTATGGAGCTTTTGAACTCGAACTC 1200
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1119 ATTTGATGGTTTGAAGATGGATATAGTGAGCTTTGGTATGGAGCTCTTGGACTCGAACTC 1178
Query 1201 TTCTGATGAACAGCTTATTGGAGTGAGGATTCTTAGGCAGTTTTCAGTGACTGAACGGTA 1260
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1179 TTCTGATGAACAGCTTATTGGAGTGAGGATTCTTAGGCAGTTTGCAGTGACTGAACGCTA 1238
Query 1261 CTCGGAGGATACACTTGAGAAGATCGGAATCAACTTTCCCGTTATTGAAAGGTTGGTGGA 1320
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1239 CTCGGAGGATACACTTGAGAAGATCGGAATTAACTTTCCTGTTATTGAAAGGTTGGTGGA 1298
Query 1321 GATGTTGAACTGGAAAGATCTGCAAGAGGAAGAGATTAGGAGATCAGCCGCTGAGATACT 1380
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1299 GATGTTGAACTGGAAAGATCTCCAAGAGGAAGAGATTAGGAGATCAGCCGCTGAGATACT 1358
Query 1381 ATCGAAACTAGCTGGCAAAAAGCAGAATTCTTTGAGAGTCGCTGGGATTTCTGGTGCAAT 1440
||||||||| ||||||||||||||||| ||||| ||||| ||||| ||||||||||||||
Sbjct 1359 ATCGAAACTTGCTGGCAAAAAGCAGAACTCTTTAAGAGTTGCTGGTATTTCTGGTGCAAT 1418
Query 1441 GGAATCGATTTCATCGTTGTTAGAGAACACGAGATCATCAGGTGAAGCTCCTGATGAGAT 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419 GGAATCGATTTCATCGTTGTTAGAGAACACGAGATCATCAGGTGAAGCTCCTGATGAGAT 1478
Query 1501 TGGAGAGAAAAAGGTGTTCCATGACCATAATCTACACTACGATTTCTGGAGATTCAACAA 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479 TGGAGAGAAAAAGGTGTTCCATGACCATAATCTACACTACGATTTCTGGAGATTCAACAA 1538
Query 1561 TTTGGGCCTTCTAATTCTGAAGAAATTAGCCAAGGATCATGACAACTGTGGAAAACTCGG 1620
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1539 TTTGGGCCTTCTAATTCTGAAGAAATTAGCCAAAGATCATGACAACTGTGGAAAACTCGG 1598
Query 1621 CAACACGAGAGGTCTTCTTCCGAAAATAATTGATTTCACACACGCGGATGAAAATCTGTT 1680
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1599 CAACACGAGAGGTCTTCTCCCGAAGATAATTGATTTCACACACGCGGATGAAAATCTGTT 1658
Query 1681 GAGGGATGAAAACGCAGACATAGCGAGGTCACGGGTTCTGACACTGAAACGGTCGCTACA 1740
||||||||| || |||||||| ||||||||| | |||||||||||||||||||| || ||
Sbjct 1659 GAGGGATGAGAATGCAGACATCGCGAGGTCATGTGTTCTGACACTGAAACGGTCACTTCA 1718
Query 1741 GCTGGTGAAAATGTTAGCCAGCACAACAGGGAACACAGGGAAGTGCCTCCGGAGAGAGAT 1800
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1719 GCTTGTGAAAATGTTAGCCAGCACAACAGGGAACACAGGGAAGTGCCTCCGGAGAGAGAT 1778
Query 1801 CTCTGAGATTGTATTCACAGTTAGCAATGTGAGGGATGTACTGAAACACGGGGCGAGATA 1860
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1779 CTCTGAGATTGTATTCACAGTTAGCAACGTGAGGGATGTACTGAGACACGGGGCGAGATA 1838
Query 1861 CCCAAAGCTGCAGAAGCTCGGGATTGGGATATTGACCAACCTTGCACTTGAGGCCGAAGC 1920
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1839 CCCAAAGCTGCAGAAGCTCGGGATCGGGATATTGACCAACCTTGCACTTGAGGCCGAAGC 1898
Query 1921 TCGGGAGAGAATTGGCGGAACTGGTGGTGTTCTGAAAGAGTTGTTCAACATTTTCTTTAA 1980
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1899 TCGGGAGAGAATTGGCGGAACCGGTGGTGTTCTGAAAGAGTTGTTCAACATTTTCTTTAA 1958
Query 1981 ACGGGAAACACGCGGAGATGAAGGGAATGAGGGATGTGTGAGGATCGCTGCAGGAGAAGC 2040
||||||||||| ||| || || ||||||||||||||||||||||| ||||||||||||||
Sbjct 1959 ACGGGAAACACACGGGGACGAGGGGAATGAGGGATGTGTGAGGATTGCTGCAGGAGAAGC 2018
Query 2041 AATAGCGATGCTTGTGTTGGAGAGCAAGAGCAACTGCCTCCATGTTCTTAGGCTTGGGGT 2100
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2019 GATAGCGATGCTTGTGTTGGAGAGCAAGAGCAACTGCCTCCATGTTCTTAGGCTTGGGGT 2078
Query 2101 TATGGGAAGACTTGTGGAAGCACTTGAAGTTCCTTCGATCCGTGTGAACGCTGCGAGAGT 2160
||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 2079 TATTGGAAGACTTGTGGAAGCACTTGAAGTTCCTCCGATCCGTGTGAACGCTGCAAGAGT 2138
Query 2161 GTTGAGAAACATGTGCTTATACTCCGGGGATGAATGCTTTCATGACCTGAAGTTCGTTAA 2220
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2139 GTTGAGAAACTTGTGCTTATACTCCGGGGATGAATGCTTTCATGACCTGAAGTTCGTTAA 2198
Query 2221 AGCAGCAGCACCAACGGTCTTGAAATCAATAACATCAGAAGACAACAAATTACAGGAAGT 2280
||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2199 AGCAGCAGCACCAACAGTCTTGAAGTCAATAACTTCAGAAGACAACAAATTACAGGAAGT 2258
Query 2281 GATGGTGGGATTAGCAGCACAAGTGTTTAGATTCATGAGCTCAAAAGAATCAAGCTATGT 2340
|||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2259 GATGGTGGGATTAGCAGCCCAAGTGTTTAGATTCATGAGTTCAAAAGAATCGAGCTATGT 2318
Query 2341 TTTCATGTATTCAGGCATCAAGAGACAAGAACTGGCAAACTCGTTGGTCTCAATTCTGAA 2400
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2319 TTTCTTGGATTCAGGCATCAAGAGACAAGAACTGGCAAACTCGTTGGTCTCAATTCTTAA 2378
Query 2401 AAAGAACGACAAGCCCGCGATTAAGGTTCCAAGAATCAGGAGGTTTGTAATTGAGCTTGC 2460
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 2379 AAAGAACGACAAGCCGGCGATTAAGGTTCCAAGAATCAGGAGGTTTGTGATTGAGCTGGC 2438
Query 2461 GATTTGGATGATGGAAGATGATGAGTTGGAGGATAATGTAGCATTGTTTAGAGAGATGGG 2520
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2439 GATTTGGATGATGGAAGATGAT---TTGGAGGATAATGTAGCATTGTTTAGAGAGATGGG 2495
Query 2521 TCTAGAGAAAGAGCTTGAGAAGGTTCTAGAAACTACGGCTGAGCTTGAGAACTTTGATGT 2580
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 2496 TCTAGAGAAAGAGCTTGAGAAGGTTCTAGAAACTACTGCTGAGCTCGAGAACTTTGATGT 2555
Query 2581 TTTCTCCGGTACTGTTGGACTAAGCCGTCATAGCAGAACTGTCCATTCACTAGCAGAGCT 2640
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 2556 TTTCTCCGGTACTGTTGGACTAAGCCGTCATAGCAGAACTGTGCATTCGCTAGCCGAGCT 2615
Query 2641 AGCCTTGGAAATTCTTAGAGGATAAATGAAGAATACACATCATCCTGCAAAATATCTTCA 2700
||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||
Sbjct 2616 AGCCTTGGAAATTCTTAGAAGATAAATGAACCATACACCTCATCCTGCAAAATATCTTCA 2675
Query 2701 AAGCTCTGCATTAGAGCTGCAAATATGACTCA-TTGTTTTGTAAGAAGAATGAATAAACA 2759
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 2676 AAGCTCTGCATTAGAGCTACAAATATGACTCAATTGTTTTGTAAGAAGAATGAATAAACA 2735
Query 2760 ATGTACAAATGTGATGGT 2777
||||||||||||||||||
Sbjct 2736 ATGTACAAATGTGATGGT 2753
> Ahg477922 jgi|Araly1|477922|fgenesh2_kg.3__623__AT3G06210.1
Length=2668
Score = 1823 bits (987), Expect = 0.0
Identities = 2049/2544 (81%), Gaps = 144/2544 (6%)
Strand=Plus/Plus
Query 181 AGACGAAGATCGAAGCATTCGTTTACAGGTCTCGGAGCTTCAAAAATTGGAGGAAGCTA- 239
||| || ||||| ||||| | ||| ||||| | |||||| ||||||||||| ||||| |
Sbjct 21 AGAGGATGATCGGAGCATCCATTTGCAGGTGTTGGAGCTCCAAAAATTGGAAGAAGC-AC 79
Query 240 TAGGCTCAACCGACACCGTTTTTGATCTA-AGAAGCAGTATCGAGAAAGGCGACAGCGGC 298
|||||||| |||||||||||| ||| || |||| ||| || | |||| |||||||||
Sbjct 80 GAGGCTCAAGCGACACCGTTTTGGAT-TATAGAAACAGCGTC--G-AAGGAGACAGCGGC 135
Query 299 GAAACCGCAGACGCAGCT-TCTATTTCCTCCGCGACCGCGTTTCGTAGAAAATCAACAGT 357
|||||||||||||||| | |||| ||||||||||| |||||||| | | | ||||| |
Sbjct 136 GAAACCGCAGACGCAG-TGTCTAATTCCTCCGCGATCGCGTTTC--A-CAGACCAACA-T 190
Query 358 C-CCAGCTCCGGAGAAGAAGCTAACGCTATTCGCTCTACAACTCGCGATTC-TTGAGAAA 415
| || || |||||| ||||||| || || |||||||| | ||||| | || | ||||||
Sbjct 191 CACCCGCGCCGGAGCAGAAGCTCACACTCTTCGCTCTCCGCCTCGC-AATCATAGAGAAA 249
Query 416 ACCGCCACTGGAA--TCGGAACCCTAGGGTTT-ATCTGGGCCACGGTGGTTCTTCTCGGC 472
| ||||||| || ||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 250 ATCGCCACT--AATCTCGGAACCCTA-GGTTTCATTTGGGCCACGGTGGTTCTTCTCGGC 306
Query 473 GGCTTCGCAATCACACTCGACGGTTCCGATTTCTGGTTCATCACCATCATTCTCCTAATC 532
|| ||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 307 GGATTCGCGATCACACTCGAAAAATCCGACTTCTGGTTCATCACCATCATTCTCCTCATC 366
Query 533 GAAGGTGCTCGAATCTTCAGCAGAAGTCACGAGCTCGAGTGGCAACACCAAGCCACGTGG 592
||||| ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 367 GAAGGCACTCGAATCTTCAGCAGAAGCCACGAGCTCGAGTGGCAGCACCATGCCACGTGG 426
Query 593 ACCGTCGCCGGCGTCGGAATCAGTAGCTTTCGCGCT-CTCCGATCAAGCTCAGCCTCGCT 651
|| || ||||||||||||| |||||||| |||| | ||| |||||||||| || ||
Sbjct 427 ACTGTATCCGGCGTCGGAATTAGTAGCTTCCGCG-TGATCCAATCAAGCTCAATTTCACT 485
Query 652 TTTCAAAAATCTAAAACGAATCAGTGATTCAATCTTCAAGCC-A----C-------GATC 699
| ||| |||||| ||||||||||| || ||||| ||||| | | |||
Sbjct 486 TCTCAGAAATCTTAAACGAATCAGCGAAGGGATCTTTAAGCCGATCCTCGATAATGGATT 545
Query 700 GAGAGAAGCGACGGCAAGAGACTGC-GTCGTTCCAGAGA-C---GA-CGT--TA-GA--- 747
|||||||||||| | | |||| | | | || | ||||| | || ||| | |
Sbjct 546 GAGAGAAGCGAC-G-ACGAGAAT-CGGACG-ACAAGAGACCTTTGATCGTCGAACAACTC 601
Query 748 -GACATGGAAGAACTCAGACGTACCTCTTCTTCCATACGCGAGATGG-TTCTTCATTTCC 805
|||||||||||||||||| || |||||||||||||| ||||||||| || | ||| |||
Sbjct 602 TGACATGGAAGAACTCAGAAGTTCCTCTTCTTCCATATGCGAGATGGCTT-TACATCTCC 660
Query 806 AG-TACAGTGAGTCGTCTTCTTTACTGGCTCCAGCTTCTCTCTGCCACG-GCTTGTGTAG 863
|| ||| ||||| || ||||||||||||||||||||| | || || | | |||||||| |
Sbjct 661 AGCTAC-GTGAGCCGGCTTCTTTACTGGCTCCAGCTTTTGTCAGCGA-GTGCTTGTGTGG 718
Query 864 CTCTATCTTCTTACAAGCTTATTAGGCATAACTATGGAGATGTTCACA-AAGGAGA-TAC 921
|||| |||||||||||||| | | ||| ||||| ||||||||||| | | ||||| |
Sbjct 719 CTCTGTCTTCTTACAAGCTCGTAATGCACAACTACGGAGATGTTCA-AGATGGAGACT-T 776
Query 922 GGATAAGAGGAATAGAC-AGTCTGCTCTCAATATATTCTACTCGCTCGC-CTTTGCTGAG 979
||| || ||||| |||| || | ||||||| || ||||||||||| || | |||| |||
Sbjct 777 GGACAAAAGGAACAGACAAG-CCGCTCTCAGCATCTTCTACTCGCTTGCGC-TTGCCGAG 834
Query 980 GCGTTGTTGTTTCTTGTGGAGAAAGTTTATTGGGAATGGCAAGTCAGTGTTTGTAATTTG 1039
|||||||||||||||| |||||||| ||| ||||| ||| | |||||||| ||||| |||
Sbjct 835 GCGTTGTTGTTTCTTGCGGAGAAAGCTTACTGGGAGTGGGAGGTCAGTGTCTGTAACTTG 894
Query 1040 CTTGAGAATGTGACTAGAGAATGTGAGTTTGGGGTTAGTGGTTTGGTTTCGATCAAGAGG 1099
|||||||||||||||||||| |||| ||||||||||||||| |||| || ||||||||
Sbjct 895 CTTGAGAATGTGACTAGAGAGTGTGGGTTTGGGGTTAGTGGAATGGTCTCTATCAAGAGA 954
Query 1100 TTTTTCTATGATTCGTATTCCAAGTGTGTCAATGGGAGTATATTTGATGGTTTGAAGATG 1159
|| ||||||||| | || || |||| ||||||||||||||| ||||||||| ||||||||
Sbjct 955 TTCTTCTATGATGCTTACTCGAAGTCTGTCAATGGGAGTATCTTTGATGGTGTGAAGATG 1014
Query 1160 GATATAGTGAGCTTTGGTATGGAGCTTTTGAACTCGAACT-CTTCTGATGAACAGCTTAT 1218
||||| |||||||||| |||||| || ||| ||| |||| | || ||||||||||| ||
Sbjct 1015 GATATGGTGAGCTTTGCTATGGATCTCTTGGGCTCAAACTGC-TCCGATGAACAGCTCAT 1073
Query 1219 TGGAGTGAGGATTCTTAGGCAGTTTTCAGTGACTGAACGGTACTCGGAGGATACACTTGA 1278
|||| ||||||||| ||||||||| | || | ||| |||| | | ||||||||||||||
Sbjct 1074 CGGAGCGAGGATTCTCAGGCAGTTTGCTGTAAATGAGCGGTTCGCAGAGGATACACTTGA 1133
Query 1279 GAAGATCGGAATCAACTTTCCCGTTATTGAAAGGTTGGTGGAGATGTTGAACTGGAAAGA 1338
|||||||||||||||||| || || ||||||||||||||||| |||||||||||||||||
Sbjct 1134 GAAGATCGGAATCAACTTACCTGTCATTGAAAGGTTGGTGGAAATGTTGAACTGGAAAGA 1193
Query 1339 TCTGCAAGAGGAAGAGATTAGGAGATCAGCCGCTGAGATACTATCGAAACTAGCTGGCAA 1398
||||||||| |||||||||||||||||||| ||||||||||| || ||||| ||||||||
Sbjct 1194 TCTGCAAGAAGAAGAGATTAGGAGATCAGCGGCTGAGATACTCTCAAAACTCGCTGGCAA 1253
Query 1399 AAAGCAGAATTCTTTGAGAGTCGCTGGGATTTCTGGTGCAATGGAATCGATTTCATCGTT 1458
||||||||| ||| | ||||| || || || |||||||| ||||||||||||||||| |
Sbjct 1254 AAAGCAGAACTCTCTCAGAGTTGCCGGAATCTCTGGTGCGATGGAATCGATTTCATCACT 1313
Query 1459 GTTAGAGAACACGAGATCATCAGGTGAAGCTCCTGATGAGATTGGAGAGAA-AAAGGTGT 1517
|||| ||||||| ||||| | ||||||||||||||| |||||||||||||| ||| | |
Sbjct 1314 GTTACAGAACACAAGATCTTTAGGTGAAGCTCCTGACGAGATTGGAGAGAAGAAAA-TCT 1372
Query 1518 TCCATGACCATAATCTACACTACGATTTCTGGAGATTCAACAATTTGGGCCTTCTA-ATT 1576
|||| |||||| |||| ||||||||||||||||| ||||||||||||||||| || |||
Sbjct 1373 TCCACGACCATCATCTTCACTACGATTTCTGGAGGTTCAACAATTTGGGCCT-CTTGATT 1431
Query 1577 CTGAAGAAATTAGCCA-AGGATCATGACAACTGTGG-AAAACTCGGCAACACGAGAGGTC 1634
|| ||||||||| ||| || |||||||||||||||| |||| |||| ||||||||||| |
Sbjct 1432 CTAAAGAAATTATCCAGAG-ATCATGACAACTGTGGGAAAA-TCGGTAACACGAGAGGGC 1489
Query 1635 TTCTTCCGAAAATAATTGA-TTTCACACACGCGGATGAAA-ATCTGTTGAGGGATGAAAA 1692
|||| || || || ||||| ||| |||||| | || | || | || |||| |||||| ||
Sbjct 1490 TTCTCCCTAAGATCATTGACTTT-ACACACACAGACGCAACA-CTCTTGAAGGATGAGAA 1547
Query 1693 CGCAGACATAGCGAGGTCACGGGTTCTGACACTGAAACGGTCGCTACAGCTGGTGAAAAT 1752
|||||| || | ||||| || |||||| ||||||||||||| ||||| ||||||||
Sbjct 1548 CGCAGATATGGTTCTGTCACAAGTCCTGACAGTGAAACGGTCGCTGCAGCTAGTGAAAAT 1607
Query 1753 GTTAGCCAGCACAA-CAGGGAACACAGGGAAGTGCCTCCGGAGAGAGATCTCTGAGATTG 1811
||||| ||||||| | || ||||| ||||| || ||| |||| |||||||| || ||||
Sbjct 1608 GTTAGTAAGCACAAGC-GGCAACACCGGGAAATGTCTCAGGAGGGAGATCTCAGAAATTG 1666
Query 1812 TATTCACAGTTAGCAA-TGTGAGGGATGTACTGAAACACGGGGCGAGATACCCAAAGCTG 1870
|||||||| | || || | |||| || ||| || || || | |||||||||||| ||
Sbjct 1667 TATTCACAATCAGTAACT-TGAGAGACGTATTGCGTCATGGAGTGAGATACCCAAAATTG 1725
Query 1871 CAGAAGCTCGGGATTGGGATAT-TGACCAACCTTGCACTTGAGGCCGAAGCTCGGGAGAG 1929
||||| |||||||| | ||| | ||| | ||| || |||||| | || || ||||||||
Sbjct 1726 CAGAAACTCGGGATCGAGAT-TCTGAGCTTCCTCGCGCTTGAGACTGATGCGCGGGAGAG 1784
Query 1930 AATTGGCGGAAC-TGGTGGTGTTCT-GAAAGAGTTGTTCAACATTTTCTTTAAACGGGAA 1987
|||||||| || ||| ||||| || ||||||| |||||| ||| ||||| ||| | ||
Sbjct 1785 AATTGGCGTTACCTGGAGGTGT-CTTGAAAGAGCTGTTCACCATCTTCTTGAAAAGA-AA 1842
Query 1988 ACACGCGGAGATGAAGGGAATGAGGGATGTGTGAGGATCGCTGCAGGAGAAGCAATAGCG 2047
| || | | ||| |||| |||| | ||| | | | | | || | | ||| ||
Sbjct 1843 A-AC-C--ACATG--GGGA-TGAG--A-GTGAAA--A-C-C-G--GGTCA-G-AATCGC- 1882
Query 2048 ATGCTTGTGTTGGAGAGCAAGAGCAACTGCCTCCATGTTCTTAGGCTTGGGGT-TATGGG 2106
||| | | ||| | | ||||||| |||| |||| | ||| || || | |||
Sbjct 1883 -TGCA-GAGC---AGA--A-G--CAACTGCATCCAAATTCTGAAGCTCGGAGTCTTTGG- 1931
Query 2107 AAGACTTGTGGAAGCACTTGAAGTTCCTTCGATCCGTGTGAACGCTGCGAGAGTGTTGAG 2166
|||||| ||||| ||||||||||||| || ||||||||| || || ||||||||||||||
Sbjct 1932 AAGACTCGTGGATGCACTTGAAGTTCATTTGATCCGTGTCAATGCAGCGAGAGTGTTGAG 1991
Query 2167 AAACATGTGCTTATACTCCGGGGATGAATGCTTTCAT-GACCTGA-AGTTCGTTAAAGCA 2224
|||| ||||| |||| || || |||||||||||| | ||||||| | || ||||| ||
Sbjct 1992 AAACTTGTGCATATATTCTGGACATGAATGCTTTC-TCGACCTGAGATTTA-TTAAAACA 2049
Query 2225 GCAGCACCAACGGTCTTGAAATCAATAACATCAGAAGACAACAAATTACAGGAAGTGATG 2284
||||| || ||||| ||||| ||||||||||||| ||||||||||||| ||||||||||
Sbjct 2050 GCAGCGCCTACGGTGTTGAAGTCAATAACATCAGGTGACAACAAATTACTGGAAGTGATG 2109
Query 2285 GTGGGATTAGCAGCACAAGTGTTTAGATTCATGAGCTCAAAAGAATCAAGCTAT-GTTTT 2343
| |||||||||||||||||||| | ||||||||| ||| ||||| ||| ||| ||| |
Sbjct 2110 CTAGGATTAGCAGCACAAGTGTTCAAATTCATGAGTTCAGAAGAAGCAAA-TATTGTTCT 2168
Query 2344 CATGTATTCAGGCATCAAGA-GACAAGAACTGGCAAACTCGTTGGTCTCAATTCTGAAAA 2402
| | ||||||| ||||| | | | |||||| || ||| | |||| || ||||||||||
Sbjct 2169 GACGGATTCAGGGATCAAAAAG-CTAGAACTTGCGAACACACTGGTATCGATTCTGAAAA 2227
Query 2403 AGAACGACAAGCCCGCGATT-AAGGTTCCAAGAATCAGGAGGTTTGTAATTGAGCTTGCG 2461
|| | |||||||| || | | |||||||||||||||||||||||||| || |||||||||
Sbjct 2228 AGCATGACAAGCCAGC-AGTCAAGGTTCCAAGAATCAGGAGGTTTGTGATAGAGCTTGCG 2286
Query 2462 ATTTGGATGATGGAAGATGATGAGTTGGAGGATAATGTA-GCATTGTTTAGAGAGATGGG 2520
|| ||||||||||||||||||| | |||| | | || | || ||| ||||| ||||
Sbjct 2287 ATATGGATGATGGAAGATGATG--T-GGAG-A-AC-GTTCGGAT-GTTCAGAGATTTGGG 2339
Query 2521 TCTAGAGAAAGAGCTTGAGAAGGTTCTAGAAACTACGGCTGAGCTTGAGAACTTTGATGT 2580
| | ||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||
Sbjct 2340 TATGGAGAAAGAGCTCGTGAAGGTTCTGGAAACTACGGCTGAGCTTGAGAACTTCGATGT 2399
Query 2581 TTTCTCCGGTACTG-TTGGACTAAGCCGTCATAGCAGAACTGTCCATTCACTAGCAGAGC 2639
|||||| || | || ||||| | ||||| || |||||||| || |||| |||| || |
Sbjct 2400 TTTCTCTGGCA-TGGTTGGAGTGAGCCGACAGAGCAGAACGGTTCATTGGTTAGCTGAAC 2458
Query 2640 TAGCCTTGGAAATTCTTAGAGGAT 2663
| || || |||| ||| ||||||
Sbjct 2459 TGGCTTTAAAAATGCTT-GAGGAT 2481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104786263995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5