BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G18990.1
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893817 jgi|Araly1|893817|Al_scaffold_0006_1813 1399 0.0
Ahg905490 jgi|Araly1|905490|Al_scaffold_0003_2618 1088 0.0
> Ahg893817 jgi|Araly1|893817|Al_scaffold_0006_1813
Length=1011
Score = 1399 bits (757), Expect = 0.0
Identities = 932/1013 (92%), Gaps = 26/1013 (3%)
Strand=Plus/Plus
Query 1 ATGGGAACTCATCGAATTATCCTTGGTCTCGCCGCTCTTTGTTGTTTTTGTCTACCTCAT 60
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGGGAACTCATCGAATTATCATTGGTCTCGTCGCTCTTTGTTGTTTTTGTCTACCTCAT 60
Query 61 CTCATTGAAGCTAAA-C---C--A-T-T-----CG--AAGTGATCGTCGATCAATCGGGC 105
||||| ||||||||| | | | | | || ||||| |||| ||||||||||||
Sbjct 61 CTCATCGAAGCTAAACCATTCGGAGTGTACCAACGACAAGTGTTCGTGGATCAATCGGGC 120
Query 106 CATGGAAATTTCACGACCATACAAAAAGCTATTGATTCGGTCCCAATCAACAATACTCAT 165
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CATGGAAATTTCAGGACCATACAAAAAGCTATTGATTCGGTCCCAATCAACAATACTCAT 180
Query 166 TGGTTCTTCATCAACGTTAAAGCCGGCCTTTACAGAGAGAAAATAACGATACCGCaaaaa 225
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 TGGTTCTTCATCAACGTTAAAGCCGGCCTTTACAGAGAGAAAATAGTGATACCGCAAAAA 240
Query 226 aaaCCTTTCATAGTAATCGTGGGAGCTGGGAAACGGTCAACGAGAGTAGAATGGGACGAC 285
||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 241 AAACCGTTCATAGTAATCGTGGGAGCTGGGAAAAGGTTAACGAGAGTAGAATGGGACGAC 300
Query 286 CATGCCTCGCTTGCACAAAGCCCTACCTTTGCTACTCTAGCTGATAACACCGTCGTTAAA 345
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 CATGACTCGCTTGCACAAAGCCCTACCTTTGCTACTCTCGCTGATAACACCGTCGTTAAA 360
Query 346 AAG-ATCACTTTCGCCAATTCCTACAACTTCCCTAGCAATGGGAAAATAAACAAGAACCC 404
| | ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 361 A-GCATCACTTTCGCCAATTCCTACAACTTCCCTAGCAAAGGGAAAATGAACAAGAACCC 419
Query 405 TAGAGTTCCGGCCGTGGCAGCATTTATCGGCGGTGATAAGTCGGCTTTTTACTCGGTAGG 464
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 420 TAGAGTTCCGGCCGTGGCAGCGTTTATCGGCGGTGATAAGTCGGCTTTTTACTCGGTAGG 479
Query 465 ATTTGCTGGAATTCAAGATACCTTGTGGGACTCGGATGGCCGACACTACTTCCATAGATG 524
||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 480 ATTTGCTGGAATTCAAGATACCTTGTGGGACTCTGATGGCCGACACTACTTCCACCGATG 539
Query 525 CACCATCCAAGGCGCGGTTGATTTCATCTTAGGGAGCGGCCAATCTATTTACCAGAGCTG 584
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 540 CACCATCCAAGGCGCGGTTGATTTCATCTTGGGGGGCGGCCAATCTATTTACCAGAGCTG 599
Query 585 TGTGATACAAGTGCTAGGTGGGCAGCTAGGACCGG--GGGT-A-ACGGGTTACATAACGG 640
||||||||||||||||||||||||||||| ||||| ||| | | ||||||||||||||
Sbjct 600 TGTGATACAAGTGCTAGGTGGGCAGCTAGAACCGGCCGGGACAGA-GGGTTACATAACGG 658
Query 641 CTCAAGGACGGACCAACGCAAACGACGCGAATGGATTCGTATTCATCAACTGCCTCGTTC 700
|||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTCAAGGACGGAACAACCCCTACGACGCGAATGGATTCGTATTCATCAACTGCCTCGTTT 718
Query 701 ATGGATTCGGCAAGGCTTACTTGGGCAGAGCCTGGCGCCCATACTCTCGAGTGATATTTT 760
||||| ||||||||| |||||||||||||||||||| || ||||||||||| || ||||
Sbjct 719 ATGGAACCGGCAAGGCCTACTTGGGCAGAGCCTGGCGGCCTTACTCTCGAGTTATTTTTT 778
Query 761 ACAACTCGAACCTGACGGATGTGGTTGATCCTCTAGGATGGTGGGAATGGAACTAC-CAG 819
||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | | |
Sbjct 779 ACAACTCGAACCTGACGGATGTGGTTGTTCCTCGAGGATGGTGGGAATGGAACCAAAC-G 837
Query 820 GGTTACGAAAAGCAGCTGACCTATGCAGAACATGGATGCTTCGGAAGTGGATCAAATACA 879
|| |||||||| ||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 838 GGCTACGAAAAACAGCTGATCTTTGCAGAACATGGATGCTTCGGAAGTGGATCAAATACA 897
Query 880 TCAAGACGTGCCAAATGGGTTAAGAAGCTGAGTGCATCTGCCGTCCAACATTTGGCTGAT 939
|| ||||| || ||||||||||||||||||| ||||||||||||||| ||| |||||
Sbjct 898 GGAAAACGTGTGAAGTGGGTTAAGAAGCTGAGTGGATCTGCCGTCCAACAATTGACTGAT 957
Query 940 CTCAGCTTCATTAATCGTGGTGGATGGGTTGAAGA-TTTACCCATCCGTGTTT 991
|| |||||||||||||||||||||||| |||| || ||||||||||| |||||
Sbjct 958 CTTAGCTTCATTAATCGTGGTGGATGGCTTGA-GAATTTACCCATCCCTGTTT 1009
> Ahg905490 jgi|Araly1|905490|Al_scaffold_0003_2618
Length=1008
Score = 1088 bits (589), Expect = 0.0
Identities = 879/1016 (87%), Gaps = 31/1016 (3%)
Strand=Plus/Plus
Query 1 ATGGGAACTCATCGAATTATCCTTGGTCTCGCCGCTCTTTGTTGTTTTTGTCTACCTCAT 60
|||||||||||||||||| || | ||||| ||||||||||||||||||| ||||||||
Sbjct 1 ATGGGAACTCATCGAATTTTCATAGGTCTTATCGCTCTTTGTTGTTTTTGTTTACCTCAT 60
Query 61 CTCATTGAAGCTAAACCATTC---G------------AAGTGATCGTCGATCAATCGGGC 105
||||||||||||||||||||| | ||||| |||| ||||||||||||
Sbjct 61 CTCATTGAAGCTAAACCATTCGGAGTATACCAACAACAAGTGTTCGTGGATCAATCGGGC 120
Query 106 CATGGAAATTTCACGACCATACAAAAAGCTATTGATTCGGTCCCAATCAACAATAC-TCA 164
||||||||||||||||| |||||||||||||||||||| || |||||||||||| | |||
Sbjct 121 CATGGAAATTTCACGACAATACAAAAAGCTATTGATTCTGTTCCAATCAACAAT-CGTCA 179
Query 165 TTGGTTCTTCATCAACGTTAAAGCCGGCCTTTACAGAGAGAAAATAACGATACCGCaaaa 224
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | |
Sbjct 180 TTGGTTCTTCATCAACGTTAAAGCTGGCCTTTACAGAGAGAAAATAAAGATACCGTATGA 239
Query 225 aaaaCCTTTCATAGTAATCGTGGGAGCTGGGAA-ACGGTCAACGAGAGTAGAATGGGACG 283
|||||| ||||||||| | || ||||||||||| | ||| ||||||||| ||||||||||
Sbjct 240 AAAACCGTTCATAGTATTAGTAGGAGCTGGGAAGA-GGTTAACGAGAGTTGAATGGGACG 298
Query 284 ACCATGCCTCGCTTGCACAAAGCCCTACCTTTGCTACTCTAGCTGATAACACCGTCGTTA 343
||||| |||| |||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 299 ACCATTACTCGGTTGCACAAAGCCCTACCTTTTCTACTCTAGCCGATAACACCGTCGTT- 357
Query 344 AAAAG-ATCACTTTCGCCAATTCCTACAACTTCCCTAGCAATGGGAAAATAAACAAGAAC 402
||||| ||||||||||||||||| |||||||| |||||||| |||||||| |||||||||
Sbjct 358 AAAAGCATCACTTTCGCCAATTCATACAACTTTCCTAGCAAAGGGAAAATGAACAAGAAC 417
Query 403 CCTAGAGTTCCGGCCGTGGCAGCATTTATCGGCGGTGATAAGTCGGCTTTTTACTCGGTA 462
|||||| ||| ||||| || || || || || || |||||||| ||||| ||||| |||
Sbjct 418 CCTAGAACTCCAGCCGTAGCCGCGTTGATAGGTGGCGATAAGTCAGCTTTCTACTCTGTA 477
Query 463 GGATTTGCTGGAATTCAAGATACCTTGTGGGACTCGGATGGCCGACACTACTTCCATAGA 522
|| |||||||||||||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 478 GGGTTTGCTGGAATTCAAGATACCTTGTGGGACTCGGATGGTAGGCACTACTTCCACCGG 537
Query 523 TGCACCATCCAAGGCGCGGTTGATTTCATCTTAGGGAGCGGCCAATCTATTTACCAGAGC 582
|| ||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 538 TGTACCATACAAGGCGCGGTCGATTTCATCTTTGGTAGCGGCCAATCTATTTACCAGAGT 597
Query 583 TGTGTGATACAAGTGCTAGGTGGGCAGCTAGGACCGGGGGTAACGGGTTACATAACGGCT 642
||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct 598 TGTGTGATACAAGTGCTAGGTGGGCAGCTAGAACCGGGGCTAGCGGGTTACATAACGGCT 657
Query 643 CAAGGACGGACCAACGCAAACGACGCGAATGGATTCGTATTCATCAACTGCCTCGT-TCA 701
||||||||||||||| | |||| || ||||||||| | |||||||||||||| || | |
Sbjct 658 CAAGGACGGACCAACCCGTACGATGCAAATGGATTCATCTTCATCAACTGCCTTGTAT-A 716
Query 702 TGGATTCGG-CAAGGC-TTACTTGGGCAGAGCC-TGGCGCCCATACTCTCGAGTGATATT 758
|||| ||| || ||| || ||||||||| ||| |||||| |||||||||||||| ||
Sbjct 717 TGGAA-CGGGCATGGCCTT-CTTGGGCAG-GCCGTGGCGCGGTTACTCTCGAGTGATTTT 773
Query 759 TTACAACTCGAACCTGACGGATGTGGTTGATCCTCTAGGATGGTGG-GAATGGAACTACC 817
|||||||||||||||||| ||||| |||| |||| ||||||| | | |||||||| |
Sbjct 774 TTACAACTCGAACCTGACCGATGTAGTTGTTCCTGAAGGATGG-GACGCATGGAACTTCG 832
Query 818 AGGGTTACGAAAAGCAGCTGACCTATGCAGAACATGGATGCTTCGGAAGTGGATCAAATA 877
||| ||||||| ||||||| || |||||||||||||||||| ||||||||| ||| ||
Sbjct 833 TGGGCCACGAAAACCAGCTGATCTTTGCAGAACATGGATGCTTTGGAAGTGGAGCAACTA 892
Query 878 CATCAAGACGTGCCAAATGGGTTAAGAAGCTGAGTGCATCTGCCGTCCAACATTTGGCTG 937
|| |||||||| || |||||||||||||| |||| ||||||| | ||| |||||||||
Sbjct 893 CAGGAAGACGTGTGAAGTGGGTTAAGAAGCTTAGTGGATCTGCCATTCAAAATTTGGCTG 952
Query 938 ATCTCAGCTTCATTAATCGTGGTGGATGGGTTGAAGATTTACCCATCCGTGTTTGA 993
|||||||||| ||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 953 ATCTCAGCTTTATTAATCGTGGTGGATGGGTTGAAGATTTACCCATCCCTGCTTGA 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36902983656
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5