BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19000.2
Length=1705
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488784 jgi|Araly1|488784|fgenesh2_kg.6__1918__AT5G19000.1 1301 0.0
Ahg928242 jgi|Araly1|928242|scaffold_300699.1 424 1e-117
> Ahg488784 jgi|Araly1|488784|fgenesh2_kg.6__1918__AT5G19000.1
Length=1424
Score = 1301 bits (704), Expect = 0.0
Identities = 769/800 (96%), Gaps = 5/800 (1%)
Strand=Plus/Plus
Query 313 ttttttgttttttGGGAT-CTCTGTATTGTTGATGGGCACAACTAGGGTCTGCTCGGAGG 371
|||||| ||||||||||| || ||| ||||||||||||||||||||||| ||||||||||
Sbjct 67 TTTTTT-TTTTTTGGGATCCT-TGTCTTGTTGATGGGCACAACTAGGGTTTGCTCGGAGG 124
Query 372 TTTCTTCTGGATCTTCGAAATCGCTTAGCCAATCTCTCACGGTATCGACCTCTACCACAG 431
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 125 TTTCTTCTGGATCTTCGAAATCGCTTAGCCAATCTCTCACGGTATCGACGTCTACCACAG 184
Query 432 AAACAGTCAATGGTTTCCATGAATTCAAGATCTGTGGGTACTCTCTCGCTAAAGGTGTTG 491
|||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 185 AAACCGTCAATGGTTTCCATGAATTCAAGATCTGCGGATACTCTCTCGCTAAAGGTGTTG 244
Query 492 GTGTCGGCAAATACGTCGCTTCCGATACGTTTATGGTCGGTGGTTACTCGTGGGCAATCT 551
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 GTGTTGGCAAATACGTCGCTTCCGATACGTTTATGGTCGGTGGTTACTCGTGGGCAATCT 304
Query 552 ACTTTTATCCAGATGGGAAGAGTCCGGAGGATAACTCGTCTTACGTTTCTTTGTTCATAG 611
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 ACTTTTACCCAGATGGGAAGAGTCCGGAGGATAACTCGTCTTACGTTTCTTTGTTCATAG 364
Query 612 CTCTTGCTAGCGAAGGAGCTGATGTTAGGGCTTTGTTTGAGCTCACGCTTGTGGATCAGA 671
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 365 CTCTTGCTAGCGAAGGAGCTGATGTGAGGGCTTTGTTCGAGCTCACGCTTGTGGATCAGA 424
Query 672 GTGGTAATGGGAAGCATAAGGTTCATAGCCATTTTGGTAGAGCTCTCGATAGCGGTCCCT 731
||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| || |
Sbjct 425 GTGGTAATGGGAAGCATAAGGTTCATAGCCATTTTGGCAGAGCACTCGAGAGCGGACCAT 484
Query 732 ATACTCTCAAGTATCGTGGAAGCATGTGGGGATACAAGCGGTTTTTCAGGAGGTCCAGTC 791
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 485 ATACTCTCAAGTATCGTGGAAGCATGTGGGGATACAAGCGGTTTTTCAGAAGGTCCAGTC 544
Query 792 TAGAATCGTCGGATTATTTGAAGGAGAATAGTCTCTTGGTTAGGTGCCGTGTGGGTGTGG 851
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 545 TAGAATCGTCGGATTATTTGAAGGAAAATAGTCTCTTGGTTAGGTGCCGTGTGGGTGTGG 604
Query 852 TGAAGTCAGTTACGGAGGGACCGAGGTATTACAATATCCCTGTGCCAGTTTCTAACTTGG 911
|||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 605 TGAAGTCAGTTACGGAGGGACCAAGGTATTACAATATCCCTGTCCCAGTCTCTAACTTGG 664
Query 912 GACAACAGTTGGGAAAT-TTATTGGAGAGTGGGAAAGGCTGTGATGTTGTTTTCCAAGTT 970
||||||||||||||||| || ||||| ||||||||||||||||||||| |||||||| ||
Sbjct 665 GACAACAGTTGGGAAATCTT-TTGGAAAGTGGGAAAGGCTGTGATGTTATTTTCCAACTT 723
Query 971 GATGGAGAAACCTTCAACGCACACAAATTGGTTCTTGCAACGCGTTCCCCGGTTTTCAAC 1030
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 724 GATGGAGAAACCTTCAACGCACACAAATTGGTTCTTGCGACGCGTTCCCCGGTTTTCAAG 783
Query 1031 GCACAGCTTTTTGGCCCTTTAGGAGACCGAAATACCAAATGCATAACGATAGAAGACATG 1090
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 784 GCACAGCTTTTTGGCCCTTTAGGAGACCGAAATACGAAATGCATAACGATAGAAGACATG 843
Query 1091 GAAGCACCCATTTTCAAGGT 1110
||||||||||||||||||||
Sbjct 844 GAAGCACCCATTTTCAAGGT 863
Score = 791 bits (428), Expect = 0.0
Identities = 473/495 (96%), Gaps = 2/495 (0%)
Strand=Plus/Plus
Query 1211 AAGGTATTGCTCCATTTTATCTACTGGGACGAATTGCCTGATATGCAAGAGTTAATAGGA 1270
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 859 AAGGTATTGCTCCATTTTATCTACTGGGACGAATTGCCTGATATGCAAGAGTTAATGGGC 918
Query 1271 ACAGACTCTACATTGGCGTCTACTCTTGTGGCTCAGCATCTACTAGCAGCGGCAGACCGT 1330
|| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 919 ACGGACTCTACATTGGCGTCTACTCTTGTGGCTCAGCATCTGCTTGCAGCGGCAGACCGT 978
Query 1331 TATGCTCTTGAGCGGCTTAAAGCAATCTGTGAGTCAAAACTCTGTGAAGGGGTTGCCATA 1390
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 979 TATGCTCTTGAGCGGCTTAAAGCTATCTGTGAGTCAAAACTCTGTGAAGGGGTCGCCATA 1038
Query 1391 AACACGGTTGCAACTACTTTGGCCCTAGCAGAGCAGCATCATTGTTTGCAGCTAAAAGCA 1450
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1039 AACACGGTTGCAACTACCTTGGCACTAGCAGAGCAGCATCATTGTTTCCAGCTAAAAGCA 1098
Query 1451 GTGTGTCTCAAATTCGTGGCACTGCCAGAGAACCTGAAAGCTGTGATGCAAACAGATGGG 1510
|| ||||||||||| |||||||||||| |||||||||||| ||||||||| |||||||||
Sbjct 1099 GTTTGTCTCAAATTTGTGGCACTGCCAAAGAACCTGAAAGATGTGATGCACACAGATGGG 1158
Query 1511 TTTGATTATCTGAAAGAGAGTTGCCCATCTTTACTAACGGAGCTATTGCAGTATGTGGCG 1570
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1159 TTTGATTATCTGAAAGAGAGTTGCCCATCTTTACTAACGGAGCTATTGGAGTATGTGGCG 1218
Query 1571 AGGCTAAGTGAACACTCTGTTATAGTATCTGGACATCGAAAAGAAATATTTGCCGATGGT 1630
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1219 AGGCTGAGTGAACACTCTGTTATAGCATCTGGACATCGAAAAGAAATATTTGCCGATGGT 1278
Query 1631 TGTGACGCGAGTGGAAGACGAGTGAAGCCCCGGTTGCACTGAATGGGAGAGAAAGAAGAA 1690
||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1279 TGTGATGCGAGTGGTAGACGAGTGAAGCCCCGGTTGCACTGAATGGGAGAGA--GAAGAA 1336
Query 1691 AGATTTGTGCATTGT 1705
|||||||||||||||
Sbjct 1337 AGATTTGTGCATTGT 1351
> Ahg928242 jgi|Araly1|928242|scaffold_300699.1
Length=1261
Score = 424 bits (229), Expect = 1e-117
Identities = 385/460 (84%), Gaps = 12/460 (3%)
Strand=Plus/Plus
Query 1217 TTGCTCCATTTTATCTACTGGGACGAATTGCCTGATATGCAAGAGTTAATAGGAACAGAC 1276
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 786 TTGCTCCATTTTATCTACTGGGACGAATTGCCTGATATGCAAGACTTAATGGGCACAGAC 845
Query 1277 TCT-ACATTGGCGTCTACTCTTGTGGCTCAGCATCTACTAGCAGCGGCAGACCGTTATGC 1335
| | | || ||| || |||||||||||||||||||| || ||||| |||||||| |||||
Sbjct 846 T-TGAAATGGGCATCAACTCTTGTGGCTCAGCATCTGCTTGCAGCTGCAGACCGATATGC 904
Query 1336 TCTTGAGCGGCTTA-AAGCAATCTGTGAGTCAAAACTCTGTGAAGGGGTT-GCCATAAAC 1393
|||||||||||||| || |||| ||||||||||||||||||||||| | || |||||
Sbjct 905 TCTTGAGCGGCTTAGAA-CAATATGTGAGTCAAAACTCTGTGAAGGAATCAGC-ATAAAT 962
Query 1394 ACGGTTGCAACTACTTTGGCCCTAGCAGAGCAGCATCATTGTTTGCAGCTAAAAGCAGTG 1453
||||||||||| || ||||| || || ||||||||||||||||| ||||| ||||| |
Sbjct 963 ACGGTTGCAACCACCTTGGCTCTTGCTGAGCAGCATCATTGTTTCCAGCTGAAAGCCGCC 1022
Query 1454 TGTCTCAAATTCGTGGCACTGCCAGAGAACCTGAAAGCTGTGATGCAAACAGATGGGTTT 1513
|| |||||||| | || | ||||| ||||| |||||||||||| |||| |||||||||
Sbjct 1023 TGCCTCAAATTTATAGCTTTTCCAGAAAACCTAAAAGCTGTGATGGAAACGGATGGGTTT 1082
Query 1514 GATTATCTGAAAGAGAGTTGCCCATCTTTACTAACG-GAGCTATTGCAGTATGTGGCGAG 1572
||||||||||| || || ||||| || |||||| | ||||||||| |||||||||| ||
Sbjct 1083 GATTATCTGAAGGAAAGCTGCCCGTCCCTACTAA-GTGAGCTATTGGAGTATGTGGCTAG 1141
Query 1573 GCTAAGTGAACACTCTGTTAT-AGT-ATCTGGACATCGAAAAGAAATATTTGCCGATGGT 1630
||| ||||| |||||| ||| | | ||| || |||||||| || ||||||| ||||||
Sbjct 1142 GCTGAGTGAGCACTCT-TTAACA-TCATCAGGGCATCGAAAGGAGTTATTTGCTGATGGT 1199
Query 1631 TGTGACGCGAGTGGAAGACGAGTGAAGCCCCGGTTGCACT 1670
|||||| | ||| ||||| ||||||| ||||| ||||
Sbjct 1200 TGTGACTTAAATGGGAGACGTGTGAAGCAACGGTTACACT 1239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63953521355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5