BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19010.1
Length=2547
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488785 jgi|Araly1|488785|fgenesh2_kg.6__1919__AT5G19010.1 3199 0.0
Ahg911627 jgi|Araly1|911627|Al_scaffold_0001_1881 514 1e-144
> Ahg488785 jgi|Araly1|488785|fgenesh2_kg.6__1919__AT5G19010.1
Length=2295
Score = 3199 bits (1732), Expect = 0.0
Identities = 1978/2094 (94%), Gaps = 27/2094 (1%)
Strand=Plus/Plus
Query 344 AACTACTCTGATTTGTTTCAATCGATTCTGGATTTCGGGATTTGGATATAGAGCTCTCTG 403
|||||| ||||||||||||| |||||||||||||| ||||||||||||| ||||||| |
Sbjct 227 AACTACCCTGATTTGTTTCATTCGATTCTGGATTTAGGGATTTGGATATTGAGCTCT-GG 285
Query 404 TTTTTGACATTGCCTTTGGAACTAAAATTCTCAGTCTTTGCAtttttttGATTCAAAAGC 463
||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 286 GTTTTGACATTGCCATTGGAACTAAAATTCTCAGTCTTTGCATTTCTTTGATTC-AAAGC 344
Query 464 TCACTAAGTTTGGGTTTCAGAAGCTATTACATTTGGTCTTCGTAAGCGTCCTTTGAATGC 523
| |||||||| || ||| |||| ||| |||||||||||||||||||| |||| ||||
Sbjct 345 TTACTAAGTTCGGTTTTTGGAAGAGATTCCATTTGGTCTTCGTAAGCGTGTTTTGGATGC 404
Query 524 CCTGTAGCTGAAGATGCAGCCTGATCACCGCAAAAAGTCATCAGTTGAGGTAGATTTCTT 583
||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 405 TCTGTAGCCGAAGATGCAACCTGATCAGCGCAAAAAGTCATCAGTTGAGGTAGATTTCTT 464
Query 584 CACGGAATATGGTGAAGGAAGCAGATACAGAATAGAGGAAGTGATTGGTAAAGGAAGTTA 643
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 465 CACGGAATACGGTGAAGGAAGCAGATACAGAATAGAGGAAGTTATTGGTAAAGGAAGCTA 524
Query 644 TGGAGTTGTCTGTTCTGCTTACGATACACATACCGGAGAGAAAGTTGCGATTAAGAAAAT 703
||||||||| || || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 525 TGGAGTTGTTTGCTCGGCTTACGATACACATACCGGAGAGAAAGTTGCGATTAAGAAGAT 584
Query 704 CAATGATATCTTT-GAGCATGTTTCGGATGCAACTCGCATTCTTCGTGAGATCAAACTTC 762
||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 585 CAATGATAT-TTTCGAGCATGTTTCGGATGCAACTCGCATTCTCCGTGAGATCAAACTTC 643
Query 763 TTAGACTCTTACGCCATCCTGACATTGTTGAGATCAAACACATCTTGTTGCCGCCTTCAA 822
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 644 TCAGACTCTTACGCCATCCAGACATTGTTGAGATCAAACACATCTTGTTGCCGCCTTCAA 703
Query 823 GAAGAGAGTTTCGAGACATTTACGTGGTTTTCGAGCTTATGGAATCTGATTTGCATCAGG 882
||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 704 GAAGAGAGTTTAAAGACATTTATGTGGTTTTCGAGCTCATGGAATCTGATTTGCATCAGG 763
Query 883 TTATTAAGGCAAATGATGATTTGACTCCTGAGCATTATCAGTTTTTCCTCTATCAGCTTC 942
||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||
Sbjct 764 TTATTAAGGCAAATGATGATTTGACTCGTGAGCATTACCAGTTTTTTCTCTATCAGCTTC 823
Query 943 TTCGTGGCCTCAAGTATATACACACAGCTAATGTCTTTCATCGGGATCTTAAACCCAAAA 1002
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 824 TTCGTGGCCTCAAGTATATACACACAGCTAATGTCTTTCATCGGGATCTAAAACCAAAAA 883
Query 1003 ACATATTGGCAAATGCTGATTGCAAACTCAAGATCTGTGATTTTGGACTTGCAAGAGTCG 1062
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 ACATACTGGCAAATGCTGATTGCAAACTCAAGATCTGTGATTTTGGACTTGCAAGAGTCG 943
Query 1063 CATTCAATGATACACCGACTGCGATATTCTGGACTGATTATGTAGCTACTCGATGGTACA 1122
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 944 CATTCAATGATACACCAACCGCGATATTCTGGACTGATTATGTAGCTACTCGATGGTACA 1003
Query 1123 GGGCTCCAGAACTATGTGGATCTTTTTTCTCAAAGTATACACCGGCAATAGATATATGGA 1182
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1004 GGGCTCCAGAACTGTGTGGATCATTTTTCTCAAAGTATACACCGGCAATAGATATATGGA 1063
Query 1183 GCATCGGGTGCATTTTTGCAGAACTCTTAACAGGGAAACCTCTTTTCCCCGGGAAAAATG 1242
|||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1064 GCATCGGGTGCATTTTCGCAGAGCTCTTAACAGGGAAACCTCTTTTCCCGGGGAAAAATG 1123
Query 1243 TGGTCCATCAATTGGATCTGATGACGGATATGCTGGGAACTCCATCTGCTGAAGCCATTG 1302
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1124 TGGTCCATCAATTGGATCTGATGACGGATATGTTGGGAACTCCATCTGCTGAAGCCATTG 1183
Query 1303 GAAGGGTTAGGAACGAGAAAGCTCGAAGATACTTGAGCAGCATGAGGAAGAAGAAGCCTA 1362
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1184 GAAGGGTGAGGAACGAGAAAGCTCGAAGATACTTAAGCAGCATGAGGAAGAAGAAGCCTA 1243
Query 1363 TTCCTTTTTCACATAAGTTCCCACATACTGATCCTCTTGCTCTTCGTCTTCTAGAAAAGA 1422
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1244 TTCCTTTTTCACATAAGTTCCCACATGCTGATCCTCTTGCTCTTCGTCTTCTAGAAAAGA 1303
Query 1423 TGTTGTCTTTTGAACCCAAGGACCGGCCTACAGCTGAAGAGGCGCTTGCAGATGTGTACT 1482
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1304 TGTTGTCTTTTGAACCCAAGGACCGGCCTACAGCTGAAGAGGCGCTTGCAGATGTATACT 1363
Query 1483 TCAAGGGTTTAGCTAAGGTTGAAAGAGAGCCTTCTGCTCAACCTGTCACAAAGTTGGAAT 1542
||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 1364 TCATGGGTTTAGCTAAGGTTGAAAGAGAGCCCTCTGCTCAACCTGTCACCAAGTTAGAAT 1423
Query 1543 TTGAGTTTGAAAGGCGGAGGATCACAAAAGAAGACGTCCGAGAGCTCATATACAGAGAGT 1602
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1424 TTGAGTTTGAAAGGCGGAGGATCACAAAAGAAGACGTGCGAGAGCTCATATACAGAGAGT 1483
Query 1603 CTCTGGAGTACCACCCAAAGATGCTGAAAGAATACTTGGATGGATCAGAGCCAACTAACT 1662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 CTCTGGAGTACCACCCAAAGATGCTGAAAGAATACTTGGATGGATCAGAGCCAACTAACT 1543
Query 1663 TTATGTACCCGAGTGCGGTGGAACATTTCAAGAAACAATTTGCTTACCTCGAGGAACACT 1722
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1544 TTATGTACCCGAGTGCGGTGGAACATTTCAAGAAACAGTTTGCTTACCTCGAGGAACACT 1603
Query 1723 ACAAGAATGGTACTTCTCATAATCCCCCTGAGAGGCAACAGCATGCATCATTACCAAGGG 1782
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1604 ACAAGAATGGTACTTCTCATAATCCCCCTGAGAGGCAACAGCACGCATCATTACCAAGGG 1663
Query 1783 CTTGCGTATTGTACTCTGATAACAATCATCCGGTGGCACAACAGAGTTCAGCTGAAGTCA 1842
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 1664 CTTGTGTATTGTACTCTGATAACAATCATCCAGTGGCACAACAGAGTTCAGCTGAAATTA 1723
Query 1843 CTGATGGACTCTCCAAGTGTAGCATTAGAGACGAGAGACCTCGGGGTGCAGACAGGAATG 1902
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1724 CTGATGGACTCTCTAAGTGTAGCATCAGAGACGAGAGACCTCGGGGTGCAGACAGGAATG 1783
Query 1903 CCCAGATGCCAATGTCGAGAATTCCTATCAACGTCCCTCAAACAATCCAAGGTGCTGCAG 1962
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1784 CCCAGATGCCAATGTCGAGAATTCCTATTAACGTCCCTCAAACGATCCAAGGTGCTGCAG 1843
Query 1963 TAGCTAGGCCTGGTAAAGTAGTTGGATCAGTGTTACGCTATAACAACTGCGGCGCAGCCA 2022
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1844 TAGCTAGGCCTGGAAAAGTAGTTGGATCAGTGTTACGCTATAAC---TGCGGCGCAGCCA 1900
Query 2023 CAGGCGTTGAAGCTCTTGAACAACAACAGAGAAGGATGGTCAGAAATCCAGCTGCTGCGT 2082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1901 CAGGCGTTGAAGCTCTTGAACAACAACAGAGAAGGATGGTCAGAAATCCAGCTGCTGCGT 1960
Query 2083 CTCAATACCCAAAGAGGACTCAACCTTGCAAAAGCAACAGAGGAGATGAAGATTGCGCCA 2142
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1961 CTCAATACCCAAAGAGGACTCATCCTTGCAAAAGCAACAGAGGAGATGAAGATTGCGCCA 2020
Query 2143 CCGCTGCTGAAGGTCCAAGTAGATTGAAGCCAAACACTCAGTATATACCACAAAAAGTGT 2202
|||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2021 CCGCCGCCGAAGGTCCAAGCAGATTGAAGCCAAACACTCAGTATATACCACAAAAAGTGG 2080
Query 2203 CTGCAGCACAAGATACTGCAATGAGTCGCTGGTATTAAACATGATGTTATGGTTCTAGTT 2262
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2081 CTGCAGCACAAGATACTGCAATGAGTCGCTGGTATTAAACATGATGTTTTGGTTCTAGTT 2140
Query 2263 TTAGCTTTACCACCTCACGTCTCAGGGAGAGCTAAAAAGAGTATCCCTTTGAGTCATCCA 2322
||||||| ||||| |||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 2141 TTAGCTTAACCACTTCACGTCTCAGGGAGAGCTAAA--GAGTAGCCCTTTGAATCATCCA 2198
Query 2323 TTGTGTTATCAAGAGCCGAAACGTGAAGACATGCTTAAGAGCGAAATGAGA-GAAGGAAG 2381
| |||||||||||||||||||| |||||| | | | |||| | | || | |||| | |
Sbjct 2199 TCGTGTTATCAAGAGCCGAAACATGAAGAGA-G-T-AAGA-C-A--TG-GCTGAAG-A-G 2248
Query 2382 CGTGAGAAGATAAAAGAAGTTCTTACAGATCCTGTCATGTAATTTGTCTTCATA 2435
|| | || | | ||| ||||||| |||| ||||||||||||||||||||||
Sbjct 2249 CG--A-AA--TGAGAGA--TTCTTACTGATCATGTCATGTAATTTGTCTTCATA 2295
> Ahg911627 jgi|Araly1|911627|Al_scaffold_0001_1881
Length=1740
Score = 514 bits (278), Expect = 1e-144
Identities = 736/948 (78%), Gaps = 68/948 (7%)
Strand=Plus/Plus
Query 579 TTCTTCACGGAATATGGTGAAG-GAAGCAGATA-CAGAATAGAGGAAG-TGATTGGTAAA 635
|||||||| || ||||| |||| || ||| || ||| || | || | || |||| |||
Sbjct 250 TTCTTCACCGAGTATGGAGAAGCTAA-CAGGTATCAG-ATTCAAGAGGTTG-TTGGGAAA 306
Query 636 GGAAGTTATGGAGTTGTCTG-TTCTGCT-TACGATACACATACCGGAGAGAA-AGTTGCG 692
||||||||||| ||||| | ||||||| || |||||||| || ||||| || ||||||
Sbjct 307 GGAAGTTATGGTGTTGT-GGCTTCTGCTGTA-GATACACACACTGGAGA-AAGAGTTGCT 363
Query 693 ATTAAGAAAATCAATGATATCTTTGAGCATGTTTCGGATGCAACTCGCATTCTTC-GTGA 751
|| ||||| ||||| ||| | ||||||||||| || ||||| ||| | |||| || | ||
Sbjct 364 ATCAAGAAGATCAACGATGTGTTTGAGCATGTCTCTGATGCTACTAGGATTC-TCAGAGA 422
Query 752 GATCAAACTT-CTTAGACT-CTTACGCCATCCTGACATTGTTGAGATCAAACACATCTTG 809
||||||| || ||| | | ||| || |||||||| |||| ||||| ||||||||| ||
Sbjct 423 GATCAAA-TTGCTTCGGTTGCTT-CGTCATCCTGATGTTGTGGAGATTAAACACATCATG 480
Query 810 -TTGCCGCCTTCAAGAAGAGAGTTTCGAGACATTTACGTGGT-TTTCGAGCTT-ATGGAA 866
|| || ||||| | ||||| || || || ||||| || || ||| ||| || ||||||
Sbjct 481 CTT-CCTCCTTCTCGCAGAGAATTCCGGGATATTTATGTTGTCTTT-GAG-TTGATGGAA 537
Query 867 TCTGAT-TTGCATCAGGTTATTAAGGCAAATGATGATTTGACTCCTGAGCATTATCAGTT 925
|||||| || ||||| || || ||||| || |||||||| ||||||||||||||||||||
Sbjct 538 TCTGATCTT-CATCAAGTCATCAAGGCCAACGATGATTTAACTCCTGAGCATTATCAGTT 596
Query 926 TTTCCTCTATCAGCTTCTTCGTGGCCTCAAGTATATACACACAGCTAATGTCTTTCATCG 985
|||| | || |||||||||||||| ||||| ||| | ||| |||||||||| ||||||||
Sbjct 597 TTTCTTGTACCAGCTTCTTCGTGGTCTCAAATATGTTCACGCAGCTAATGTGTTTCATCG 656
Query 986 GGATCTT-AAACCCAAA-AACATAT-TGGCAAATGCTGATTGCAAACTCAAGATCTGTGA 1042
||| || ||| ||||| ||||| | | || ||||||||||||||| | |||||||||||
Sbjct 657 AGAT-TTGAAA-CCAAAGAACAT-TCTAGCTAATGCTGATTGCAAATTGAAGATCTGTGA 713
Query 1043 TTTTGGACTTGCAAGAGTCGCATTCAATGATACACCGACTGCGATATTCTGGACTGATTA 1102
|||||| || || | || | || |||||| | || || || ||||| |||||||||||
Sbjct 714 TTTTGGGCTGGCTCGCGTTTCTTTTAATGATGCCCCAACCGCTATATTTTGGACTGATTA 773
Query 1103 TGTAGCTACTCGATGGTA-CAGGGCTCCAGAACTATGTGGATCTTTTTTCTC-AAAGTAT 1160
|||||||||||||||||| | | || || ||||| |||||||| |||||||| ||| |||
Sbjct 774 TGTAGCTACTCGATGGTATC-GTGCCCCTGAACTCTGTGGATCGTTTTTCTCCAAA-TAT 831
Query 1161 ACACCGGCAATAGATATATGGAGCATCGGGTGCATTTTTGCAGAACT-CTTAACAGGGAA 1219
|| || || || ||||| ||||| |||| ||||| ||||| ||| | ||| ||| |
Sbjct 832 ACCCCTGCCATTGATATCTGGAGTGTCGGTTGCATATTTGCGGAAATGCTTTT--GGGTA 889
Query 1220 A-CCTCT-TTTCCCCGGGAAAAATGTGGTCCATCAATTGGATCTGATGACGGA-TATGCT 1276
| ||| | |||||| |||||||| || || || ||||||||||| ||||| || | | ||
Sbjct 890 AGCCTTTGTTTCCC-GGGAAAAACGTTGTGCACCAATTGGATCTAATGACTGACTTT-CT 947
Query 1277 GGGAACTCCATCTGCTGAAGCC-AT-TGGAAGGGTTAGGAACGAGAAAG-CTCGAAGATA 1333
|| |||||| || |||| | | || | |||| |||| || || |||| | | |||||
Sbjct 948 TGGTACTCCACCTCCTGA-GTCGATATC-AAGGATTAGAAATGA-AAAGGCAAGGAGATA 1004
Query 1334 -CTTGAGCAGCATGAGGAAGAAG-AAGCCTATTCCTTTT-TCACATAAGTTCCC-ACATA 1389
||| |||||||||||||| || || || | ||| ||| || ||||| ||||| | |
Sbjct 1005 TCTT-AGCAGCATGAGGAAAAAACAA-CC-AGTCCCTTTCTCTCATAAATTCCCTAAAG- 1060
Query 1390 CTGATCCTCTTG-CTCTTCGTCTTCTAGAAAAGA-TG-TTGTCTTTTGAACCCAAGGACC 1446
|||||||| ||| |||| || ||||| ||| | || ||| |||| || || || ||||
Sbjct 1061 CTGATCCT-TTGGCTCTCCGCCTTCTGGAAC-GCCTGCTTGCCTTT-GATCCGAAAGACC 1117
Query 1447 G-GCCTACAGCTGAAGAGGCGCTTGCAGATGTGTACTTCAAG-GGTTT 1492
| || | |||||||||| || || || ||| ||||||| | |||||
Sbjct 1118 GTGCAT-CAGCTGAAGATGCACTAGCTGATCCATACTTCA-GTGGTTT 1163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96025507645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5