BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G19020.1 Length=2058 Score E Sequences producing significant alignments: (Bits) Value Ahg488786 jgi|Araly1|488786|fgenesh2_kg.6__1920__AT5G19020.1 3042 0.0 Ahg313215 jgi|Araly1|313215|fgenesh1_pm.C_scaffold_1001995 65.8 1e-09 Ahg913052 jgi|Araly1|913052|Al_scaffold_0001_3306 60.2 6e-08 > Ahg488786 jgi|Araly1|488786|fgenesh2_kg.6__1920__AT5G19020.1 Length=2820 Score = 3042 bits (1647), Expect = 0.0 Identities = 1887/2005 (94%), Gaps = 8/2005 (0%) Strand=Plus/Plus Query 58 GCGAGATGCTTCT-CTGCTCCGAGTCGGACCCACTTCGATTTCTCCGGCGAAAGCTCCGA 116 ||||||| |||| || |||||||| |||||||||||||||||||||||| |||||| | Sbjct 820 GCGAGATATTTCTCCT-TTCCGAGTCTGACCCACTTCGATTTCTCCGGCGAGAGCTCCAA 878 Query 117 TACTGAACGAGCTCTCGTCTCTGCTCTTGGATCGTGCGCTTCCAGTAATGACGTCACTTG 176 || |||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 879 TATTGAACGAGCTCTTGTCTCCGCTCTTGGATCGTGCGCGTCCAGTAATGACGTCACTTT 938 Query 177 TGGTAGACAGATTCATTGCCGTGTCTTGAAATCCGGTCTTGATTCTAATGGATACATATG 236 ||| ||||| || ||| |||||||||||||||| |||| |||||||||||||| ||| || Sbjct 939 TGGCAGACAAATCCATGGCCGTGTCTTGAAATCAGGTCATGATTCTAATGGATTCATCTG 998 Query 237 TAATAGCGTTCTTAACATGTACGCTAAATGCCGTCTCTTGGCT-GATGCGGAATCTGTTT 295 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 999 TAATAGCGTTCTTAACATGTACGCTAAATGCCGTCTCTTGG-TCGATGCGGAATCTGTTT 1057 Query 296 TCAGGGATCACGCGAAGCTTGATTCTGCTTCGTTCAATATTATGGTTGATGGGTATGTTA 355 || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1058 TCCGGGCTCACGCGAAGCTTGATTCTGCTTCGTTCAATATTATGGTTGATGGGTATGTTA 1117 Query 356 GATCTCGTAGACTTTGG-GATGCGCTTAAGTTGTTCGACGTAATGCCTGAGAGAAGCTGT 414 ||||||| |||| |||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 1118 GATCTCGGAGAC-TTGGAGATGCGCTTAAGTTGTTCGACGTTATGCCTGAGAGAAGCTGT 1176 Query 415 GTCTCGTATACTACTTTGATAAAGGGTTATGCTCAAAACAATCAGTGGAGTGAAGCTATG 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1177 GTCTCGTATACTACTTTGATAAAGGGTTATGCTCAAAACAATCAGTGGAGTGAAGCTATG 1236 Query 475 GAGCTTTTTAGGGAGATGAGAAATTTGGGAATTATGCTAAATGAAGTTACTTTAGCCACT 534 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 1237 GAGCTTTTTAGGGAGATGAGAAATTTGGGAATTATGCTAAATGAAGTGACTTTAGTCACT 1296 Query 535 GTTATATCTGCTTGCTCACATTTGGGTGGGATTTGGGATTGTAGGATGTTGCAGAGTTTG 594 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1297 GTTATATCTGCTTGCTCACATTTGGGTGGGATTTGGGATTGTAGGATGTTGCATAGTTTG 1356 Query 595 GCTATTAAACTCAAGCTTGAAGGTCGTGTTTTTGTTTCGACGAATTTGCTGCATATGTAC 654 |||||||||||||||||||| | ||| ||||||| ||||||||||||||||| ||||||| Sbjct 1357 GCTATTAAACTCAAGCTTGATGATCGGGTTTTTGCTTCGACGAATTTGCTGCTTATGTAC 1416 Query 655 TGTCTTTGTTTGTGTTTGAAGGATGCTCGGAAGTTGTTTGATGAAATGCCTGAGAGAAAT 714 ||| | || | |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1417 TGTATCTGCTCATGTTTGAAGGATGCTCGGCAGTTGTTTGATGAAATGCCTGAGAGAAAT 1476 Query 715 TTAGTTACTTGGAACGTGATGTTAAATGGGTACTCAAAAGCTGGACTTATTGAACAGGCT 774 ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1477 TTAGTTAGTTGGAACGTGATGTTAAATGGGTACTCAAAAGCTGGACTTATCGAACAAGCT 1536 Query 775 GAGGAATTGTTTGATCAGATTACTGAGAAAGATATTGTCTCGTGGGGTACAATGATTGAT 834 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1537 AAGGAATTGTTTGATCAGATTACTGAGAAAGATATTGTCTCGTGGGGTACAATGATTGAT 1596 Query 835 GGGTGTCTCCGAAAGAATCAGCTTGACGAAGCTCTTGTTTACTACACCGAGATGCTGCGC 894 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1597 GGGTGTCTCCGAAAGAATCAGCTTGACGAAGCTCTTGTTTACTACACCGAGATGCTGCGC 1656 Query 895 TGTGGAATGAAGCCTAGTGAAGTTATGATGGTGGACCTTCTCTCGGCTTCAGCTCGATCA 954 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1657 CGTGGAATGAAGCCTAGTGAAGTTATGATGGTGGACCTTCTCTCTGCTTCAGCTCGATCA 1716 Query 955 GTTGGTAGCTCCAAGGGTTTGCAACTTCATGGTACCATTGTGAAAAGGGGTTTTGATTGT 1014 || || || ||||| |||||||| |||||||||||||| ||||||| ||||||||||||| Sbjct 1717 GTAGGCAGTTCCAAAGGTTTGCAGCTTCATGGTACCATCGTGAAAACGGGTTTTGATTGT 1776 Query 1015 TATGATTTCTTACAAGCAACGATCATACATTTCTACGCTGTCTCTAATGACATAAAACTC 1074 ||||||||||||||||||||||||||| |||||||||||||||| ||| || | |||||| Sbjct 1777 TATGATTTCTTACAAGCAACGATCATATATTTCTACGCTGTCTCAAATAACCTGAAACTC 1836 Query 1075 GCTCTTCAGCAGTTTGAAGCGAGTGTTAAGGACCACATTGCGTCGAGAAACGCGTTGATT 1134 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1837 GCTCTTCAGCAGTTTGAAGCGAGTGTTAAGGACCACATTGCATCGAGAAACGCGTTGATT 1896 Query 1135 GCAGGATTTGTGAAGAATGGAATGGTTGAGCAGGCAAGAGAAGTATTTGATCAGACTCAT 1194 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1897 GCAGGATTTGTGAAGAATGGAATGGTTGAGCAGGCAAGAGAAGTATTTGATCAGACTCGT 1956 Query 1195 GATAAAGACATCTTTTCATGGAACGCTATGATATCGGGTTACGCGCAAAGTCTATCGCCT 1254 |||||||| ||||||||||||||||||||||| |||||||||||||| ||| |||||||| Sbjct 1957 GATAAAGATATCTTTTCATGGAACGCTATGATGTCGGGTTACGCGCAGAGTTTATCGCCT 2016 Query 1255 CAGTTAGCTCTACATCTATTCCGCGAAATGATCAGTAGTAGCCAAGTAAAACCAGATGCA 1314 ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 2017 CAGTTAGCTCTACATCTCTTCCACGAAATGATCAGTAGTAGCCAAGTAAAACCAGATGCA 2076 Query 1315 ATCACAATGGTTAGTGTTTTTTCTGCAATTTCTTCTCTAGGATCGTTGGAAGAAGGGAAG 1374 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2077 ATCACAATGGTTAGTGTTTTCTCTGCAATTTCTTCTCTAGGATCGTTGGAAGAAGGGAAA 2136 Query 1375 AGAGCACATGATTATCTAAACTTTAGCACGATTCCTCCCAACGACAATCTAACCGCTGCT 1434 ||||| ||||| ||||||||| |||| |||||||||| ||||||||||| | ||||||| Sbjct 2137 AGAGCGCATGAGTATCTAAACCGTAGCTCGATTCCTCCTAACGACAATCTGATCGCTGCT 2196 Query 1435 ATAATCGACATGTACGCCAAATGTGGAAGCATCGAAACTGCTCTAAACATTTTCCACCAA 1494 ||||| |||||||||||||||||||||||||| |||| |||||||||||||||| |||| Sbjct 2197 ATAATTAACATGTACGCCAAATGTGGAAGCATCAAAACCGCTCTAAACATTTTCCGCCAA 2256 Query 1495 ACAAAGAACATTTCTTCTTCTACAATCTCTCCCTGGAACGCCATCATTTGCGGCTCAGCG 1554 ||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 2257 ACAAAGAACATTTTTTCTTCTACAATCTCTCCGTGGAACGCCATCATTTGCGGGTCAGCG 2316 Query 1555 ACACATGGCCATGCAAAACTAGCGCTTGATCTCTACTCCGATCTCCAATCTCTCCCCATC 1614 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || Sbjct 2317 ACACATGGCCACGCAAAACTAGCACTTGATCTCTACTCCGATCTCCAATCTCTCCCAATA 2376 Query 1615 AAACCGAACAGCATCACTTTTGTCGGTGTCTTGAGCGCATGCTGCCATGCAGGGCTAGTG 1674 ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 2377 AAACCAAACAGCATCACTTTTGTCGGTGTCTTGAGCGCCTGCTGCCATGCAGGCCTAGTG 2436 Query 1675 GAGTTAGGTAAAACGTATTTCGAAAGCATGAAGAGCGATCACGGGATCGAGCCAGACATC 1734 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2437 GAGCTAGGTAAAACGTATTTCGAAAGCATGAAGAGCGATCACGGGATCGAGCCAGACATC 2496 Query 1735 AAACATTATGGATGTATGGTTGATTTATTGGGGAAAGCTGGGA-GATTAGAGGAAGCTAA 1793 || ||||| ||||||||||||||||| ||||| |||||||||| | ||||||||||| || Sbjct 2497 AAGCATTACGGATGTATGGTTGATTTGTTGGGAAAAGCTGGGAAG-TTAGAGGAAGCAAA 2555 Query 1794 AGAAATGATCAAGAAGATGCCTGTAAAGGCTGATGTAATGATCTGGGGGATGTTATTATC 1853 ||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| Sbjct 2556 AGAAATGATCAAGAAGATGCCGGTTAAGGCTGATGTGATGATCTGGGGGATGTTATTATC 2615 Query 1854 AGCTTCACGAACTCACGGGAACGTCGAGATCGCCGAACTTGCGGCTACTGAGCTAGCAGC 1913 |||||||| | |||||||||||||||| | || || ||||||||||||||||| ||||| Sbjct 2616 GGCTTCACGGATTCACGGGAACGTCGAGGTTGCTGAGCTTGCGGCTACTGAGCTGGCAGC 2675 Query 1914 GATTGATCCATCTCATGGAGGATGCAAAGTTATGCTTTCGAACGTTTATGCAGACGCAGG 1973 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2676 AATTGATCCATCTCACGGAGGATGCAAAGTTATGCTTTCGAACGTTTATGCAGACGCAGG 2735 Query 1974 GAGATGGGAAGATGTAGCTTTGGTTAGAGAAGAGATGCGAACGAGAGATGTTGAGTGGTC 2033 |||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| Sbjct 2736 GAGATGGGAAGATGTAGCTTTGGTTAGAGAAGTGATGCAAACAAGAGATGTTGAGTGGTC 2795 Query 2034 ACGTGCCTTCAGTGGTGTTGTGTGA 2058 ||||||||||||||||||||||||| Sbjct 2796 ACGTGCCTTCAGTGGTGTTGTGTGA 2820 > Ahg313215 jgi|Araly1|313215|fgenesh1_pm.C_scaffold_1001995 Length=3405 Score = 65.8 bits (35), Expect = 1e-09 Identities = 52/60 (87%), Gaps = 1/60 (2%) Strand=Plus/Plus Query 684 GAAGTTGTTTGATGAAATGCCTGAGAGAAATTTAGTTACTTGGAACGTGATGTT-AAATG 742 ||||||||||||||||||||||||||||||||||| | ||| || || |||| ||||| Sbjct 501 GAAGTTGTTTGATGAAATGCCTGAGAGAAATTTAGCTGTTTGCAATTTGCTGTTGAAATG 560 > Ahg913052 jgi|Araly1|913052|Al_scaffold_0001_3306 Length=2379 Score = 60.2 bits (32), Expect = 6e-08 Identities = 40/44 (91%), Gaps = 0/44 (0%) Strand=Plus/Plus Query 686 AGTTGTTTGATGAAATGCCTGAGAGAAATTTAGTTACTTGGAAC 729 ||||||||||||||||||||||||||||| | ||| | |||||| Sbjct 566 AGTTGTTTGATGAAATGCCTGAGAGAAATGTGGTTTCGTGGAAC 609 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 77399377840 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5