BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19020.1
Length=2058
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488786 jgi|Araly1|488786|fgenesh2_kg.6__1920__AT5G19020.1 3042 0.0
Ahg313215 jgi|Araly1|313215|fgenesh1_pm.C_scaffold_1001995 65.8 1e-09
Ahg913052 jgi|Araly1|913052|Al_scaffold_0001_3306 60.2 6e-08
> Ahg488786 jgi|Araly1|488786|fgenesh2_kg.6__1920__AT5G19020.1
Length=2820
Score = 3042 bits (1647), Expect = 0.0
Identities = 1887/2005 (94%), Gaps = 8/2005 (0%)
Strand=Plus/Plus
Query 58 GCGAGATGCTTCT-CTGCTCCGAGTCGGACCCACTTCGATTTCTCCGGCGAAAGCTCCGA 116
||||||| |||| || |||||||| |||||||||||||||||||||||| |||||| |
Sbjct 820 GCGAGATATTTCTCCT-TTCCGAGTCTGACCCACTTCGATTTCTCCGGCGAGAGCTCCAA 878
Query 117 TACTGAACGAGCTCTCGTCTCTGCTCTTGGATCGTGCGCTTCCAGTAATGACGTCACTTG 176
|| |||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 879 TATTGAACGAGCTCTTGTCTCCGCTCTTGGATCGTGCGCGTCCAGTAATGACGTCACTTT 938
Query 177 TGGTAGACAGATTCATTGCCGTGTCTTGAAATCCGGTCTTGATTCTAATGGATACATATG 236
||| ||||| || ||| |||||||||||||||| |||| |||||||||||||| ||| ||
Sbjct 939 TGGCAGACAAATCCATGGCCGTGTCTTGAAATCAGGTCATGATTCTAATGGATTCATCTG 998
Query 237 TAATAGCGTTCTTAACATGTACGCTAAATGCCGTCTCTTGGCT-GATGCGGAATCTGTTT 295
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 999 TAATAGCGTTCTTAACATGTACGCTAAATGCCGTCTCTTGG-TCGATGCGGAATCTGTTT 1057
Query 296 TCAGGGATCACGCGAAGCTTGATTCTGCTTCGTTCAATATTATGGTTGATGGGTATGTTA 355
|| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 TCCGGGCTCACGCGAAGCTTGATTCTGCTTCGTTCAATATTATGGTTGATGGGTATGTTA 1117
Query 356 GATCTCGTAGACTTTGG-GATGCGCTTAAGTTGTTCGACGTAATGCCTGAGAGAAGCTGT 414
||||||| |||| |||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1118 GATCTCGGAGAC-TTGGAGATGCGCTTAAGTTGTTCGACGTTATGCCTGAGAGAAGCTGT 1176
Query 415 GTCTCGTATACTACTTTGATAAAGGGTTATGCTCAAAACAATCAGTGGAGTGAAGCTATG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 GTCTCGTATACTACTTTGATAAAGGGTTATGCTCAAAACAATCAGTGGAGTGAAGCTATG 1236
Query 475 GAGCTTTTTAGGGAGATGAGAAATTTGGGAATTATGCTAAATGAAGTTACTTTAGCCACT 534
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1237 GAGCTTTTTAGGGAGATGAGAAATTTGGGAATTATGCTAAATGAAGTGACTTTAGTCACT 1296
Query 535 GTTATATCTGCTTGCTCACATTTGGGTGGGATTTGGGATTGTAGGATGTTGCAGAGTTTG 594
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1297 GTTATATCTGCTTGCTCACATTTGGGTGGGATTTGGGATTGTAGGATGTTGCATAGTTTG 1356
Query 595 GCTATTAAACTCAAGCTTGAAGGTCGTGTTTTTGTTTCGACGAATTTGCTGCATATGTAC 654
|||||||||||||||||||| | ||| ||||||| ||||||||||||||||| |||||||
Sbjct 1357 GCTATTAAACTCAAGCTTGATGATCGGGTTTTTGCTTCGACGAATTTGCTGCTTATGTAC 1416
Query 655 TGTCTTTGTTTGTGTTTGAAGGATGCTCGGAAGTTGTTTGATGAAATGCCTGAGAGAAAT 714
||| | || | |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1417 TGTATCTGCTCATGTTTGAAGGATGCTCGGCAGTTGTTTGATGAAATGCCTGAGAGAAAT 1476
Query 715 TTAGTTACTTGGAACGTGATGTTAAATGGGTACTCAAAAGCTGGACTTATTGAACAGGCT 774
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1477 TTAGTTAGTTGGAACGTGATGTTAAATGGGTACTCAAAAGCTGGACTTATCGAACAAGCT 1536
Query 775 GAGGAATTGTTTGATCAGATTACTGAGAAAGATATTGTCTCGTGGGGTACAATGATTGAT 834
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1537 AAGGAATTGTTTGATCAGATTACTGAGAAAGATATTGTCTCGTGGGGTACAATGATTGAT 1596
Query 835 GGGTGTCTCCGAAAGAATCAGCTTGACGAAGCTCTTGTTTACTACACCGAGATGCTGCGC 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1597 GGGTGTCTCCGAAAGAATCAGCTTGACGAAGCTCTTGTTTACTACACCGAGATGCTGCGC 1656
Query 895 TGTGGAATGAAGCCTAGTGAAGTTATGATGGTGGACCTTCTCTCGGCTTCAGCTCGATCA 954
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1657 CGTGGAATGAAGCCTAGTGAAGTTATGATGGTGGACCTTCTCTCTGCTTCAGCTCGATCA 1716
Query 955 GTTGGTAGCTCCAAGGGTTTGCAACTTCATGGTACCATTGTGAAAAGGGGTTTTGATTGT 1014
|| || || ||||| |||||||| |||||||||||||| ||||||| |||||||||||||
Sbjct 1717 GTAGGCAGTTCCAAAGGTTTGCAGCTTCATGGTACCATCGTGAAAACGGGTTTTGATTGT 1776
Query 1015 TATGATTTCTTACAAGCAACGATCATACATTTCTACGCTGTCTCTAATGACATAAAACTC 1074
||||||||||||||||||||||||||| |||||||||||||||| ||| || | ||||||
Sbjct 1777 TATGATTTCTTACAAGCAACGATCATATATTTCTACGCTGTCTCAAATAACCTGAAACTC 1836
Query 1075 GCTCTTCAGCAGTTTGAAGCGAGTGTTAAGGACCACATTGCGTCGAGAAACGCGTTGATT 1134
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1837 GCTCTTCAGCAGTTTGAAGCGAGTGTTAAGGACCACATTGCATCGAGAAACGCGTTGATT 1896
Query 1135 GCAGGATTTGTGAAGAATGGAATGGTTGAGCAGGCAAGAGAAGTATTTGATCAGACTCAT 1194
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1897 GCAGGATTTGTGAAGAATGGAATGGTTGAGCAGGCAAGAGAAGTATTTGATCAGACTCGT 1956
Query 1195 GATAAAGACATCTTTTCATGGAACGCTATGATATCGGGTTACGCGCAAAGTCTATCGCCT 1254
|||||||| ||||||||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct 1957 GATAAAGATATCTTTTCATGGAACGCTATGATGTCGGGTTACGCGCAGAGTTTATCGCCT 2016
Query 1255 CAGTTAGCTCTACATCTATTCCGCGAAATGATCAGTAGTAGCCAAGTAAAACCAGATGCA 1314
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 2017 CAGTTAGCTCTACATCTCTTCCACGAAATGATCAGTAGTAGCCAAGTAAAACCAGATGCA 2076
Query 1315 ATCACAATGGTTAGTGTTTTTTCTGCAATTTCTTCTCTAGGATCGTTGGAAGAAGGGAAG 1374
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2077 ATCACAATGGTTAGTGTTTTCTCTGCAATTTCTTCTCTAGGATCGTTGGAAGAAGGGAAA 2136
Query 1375 AGAGCACATGATTATCTAAACTTTAGCACGATTCCTCCCAACGACAATCTAACCGCTGCT 1434
||||| ||||| ||||||||| |||| |||||||||| ||||||||||| | |||||||
Sbjct 2137 AGAGCGCATGAGTATCTAAACCGTAGCTCGATTCCTCCTAACGACAATCTGATCGCTGCT 2196
Query 1435 ATAATCGACATGTACGCCAAATGTGGAAGCATCGAAACTGCTCTAAACATTTTCCACCAA 1494
||||| |||||||||||||||||||||||||| |||| |||||||||||||||| ||||
Sbjct 2197 ATAATTAACATGTACGCCAAATGTGGAAGCATCAAAACCGCTCTAAACATTTTCCGCCAA 2256
Query 1495 ACAAAGAACATTTCTTCTTCTACAATCTCTCCCTGGAACGCCATCATTTGCGGCTCAGCG 1554
||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 2257 ACAAAGAACATTTTTTCTTCTACAATCTCTCCGTGGAACGCCATCATTTGCGGGTCAGCG 2316
Query 1555 ACACATGGCCATGCAAAACTAGCGCTTGATCTCTACTCCGATCTCCAATCTCTCCCCATC 1614
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 2317 ACACATGGCCACGCAAAACTAGCACTTGATCTCTACTCCGATCTCCAATCTCTCCCAATA 2376
Query 1615 AAACCGAACAGCATCACTTTTGTCGGTGTCTTGAGCGCATGCTGCCATGCAGGGCTAGTG 1674
||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 2377 AAACCAAACAGCATCACTTTTGTCGGTGTCTTGAGCGCCTGCTGCCATGCAGGCCTAGTG 2436
Query 1675 GAGTTAGGTAAAACGTATTTCGAAAGCATGAAGAGCGATCACGGGATCGAGCCAGACATC 1734
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2437 GAGCTAGGTAAAACGTATTTCGAAAGCATGAAGAGCGATCACGGGATCGAGCCAGACATC 2496
Query 1735 AAACATTATGGATGTATGGTTGATTTATTGGGGAAAGCTGGGA-GATTAGAGGAAGCTAA 1793
|| ||||| ||||||||||||||||| ||||| |||||||||| | ||||||||||| ||
Sbjct 2497 AAGCATTACGGATGTATGGTTGATTTGTTGGGAAAAGCTGGGAAG-TTAGAGGAAGCAAA 2555
Query 1794 AGAAATGATCAAGAAGATGCCTGTAAAGGCTGATGTAATGATCTGGGGGATGTTATTATC 1853
||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 2556 AGAAATGATCAAGAAGATGCCGGTTAAGGCTGATGTGATGATCTGGGGGATGTTATTATC 2615
Query 1854 AGCTTCACGAACTCACGGGAACGTCGAGATCGCCGAACTTGCGGCTACTGAGCTAGCAGC 1913
|||||||| | |||||||||||||||| | || || ||||||||||||||||| |||||
Sbjct 2616 GGCTTCACGGATTCACGGGAACGTCGAGGTTGCTGAGCTTGCGGCTACTGAGCTGGCAGC 2675
Query 1914 GATTGATCCATCTCATGGAGGATGCAAAGTTATGCTTTCGAACGTTTATGCAGACGCAGG 1973
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2676 AATTGATCCATCTCACGGAGGATGCAAAGTTATGCTTTCGAACGTTTATGCAGACGCAGG 2735
Query 1974 GAGATGGGAAGATGTAGCTTTGGTTAGAGAAGAGATGCGAACGAGAGATGTTGAGTGGTC 2033
|||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||
Sbjct 2736 GAGATGGGAAGATGTAGCTTTGGTTAGAGAAGTGATGCAAACAAGAGATGTTGAGTGGTC 2795
Query 2034 ACGTGCCTTCAGTGGTGTTGTGTGA 2058
|||||||||||||||||||||||||
Sbjct 2796 ACGTGCCTTCAGTGGTGTTGTGTGA 2820
> Ahg313215 jgi|Araly1|313215|fgenesh1_pm.C_scaffold_1001995
Length=3405
Score = 65.8 bits (35), Expect = 1e-09
Identities = 52/60 (87%), Gaps = 1/60 (2%)
Strand=Plus/Plus
Query 684 GAAGTTGTTTGATGAAATGCCTGAGAGAAATTTAGTTACTTGGAACGTGATGTT-AAATG 742
||||||||||||||||||||||||||||||||||| | ||| || || |||| |||||
Sbjct 501 GAAGTTGTTTGATGAAATGCCTGAGAGAAATTTAGCTGTTTGCAATTTGCTGTTGAAATG 560
> Ahg913052 jgi|Araly1|913052|Al_scaffold_0001_3306
Length=2379
Score = 60.2 bits (32), Expect = 6e-08
Identities = 40/44 (91%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 686 AGTTGTTTGATGAAATGCCTGAGAGAAATTTAGTTACTTGGAAC 729
||||||||||||||||||||||||||||| | ||| | ||||||
Sbjct 566 AGTTGTTTGATGAAATGCCTGAGAGAAATGTGGTTTCGTGGAAC 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77399377840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5