BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19030.1
Length=682
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893821 jgi|Araly1|893821|Al_scaffold_0006_1817 643 0.0
> Ahg893821 jgi|Araly1|893821|Al_scaffold_0006_1817
Length=504
Score = 643 bits (348), Expect = 0.0
Identities = 466/519 (90%), Gaps = 23/519 (4%)
Strand=Plus/Plus
Query 44 ATGGCTCTGTCTTCGTCGACTTTCCAAATCCCGTTCCTCAAACACC-GTTACTTCGGAAT 102
||||| ||||||||||||||||||||||| ||||| ||||||||| || ||||||||
Sbjct 1 ATGGCACTGTCTTCGTCGACTTTCCAAATTCCGTTATTCAAACACCAATT-CTTCGGAAC 59
Query 103 GTCTCAAAATCTGAGGACACCT-ATTTTAAC-GATGTC-TACAATCCCCAGAGATCGTTT 159
||||||||||||||| |||| | | ||| || || | | | ||| |||||| | |
Sbjct 60 GTCTCAAAATCTGAGAACACTTCA-TTT-ACAGACGACGGA-AATTCCCAGA-A--G--- 110
Query 160 GATTTCGTCATTTCATACGGCGCGAAGCAAACT-CTGTTCTCCT---CTCCGGACCATCA 215
| ||||||||||| ||||||||||||||| | |||||||||| |||||||||||||
Sbjct 111 G---TCGTCATTTCACACGGCGCGAAGCAAA-TCCTGTTCTCCTCCGCTCCGGACCATCA 166
Query 216 GCTGCGTCGCCGGAGACGATGAAACCAGAGAAGCATCTTCTCTTCCTTCTTCGATATCTT 275
||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||
Sbjct 167 GCTGCATCGCCGGAGACGATGGAACCAGAGAAGCATCTTCTCTTCCTACTTCGATCTCTT 226
Query 276 CGCTTTTCGTGAAAGGGTTTTCGGATTCAGTGAGTGAAGGACGTTTAAAGAAAGTCTTCT 335
|| |||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 227 CGGTTTTCGTGAAGGGGTTTTCGGATTCAGTGAGTGAAGGGCGTTTGAAGAAAGTCTTCT 286
Query 336 CCGAGTTTGGACAAGTTACCAATGTAAAAATCATCGCAAACGAAAGGACTCGGCAGTCAC 395
| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 287 CTGAGTTTGGACAAGTTACCAATGTAAAAATCATCGTAAACGAAAGGACTCGGCAGTCTC 346
Query 396 TAGGATACGGATATGTCTGGTTCAACAGCAAAGAGGACGCACAGTCGGCTGTCGAAGCCA 455
|||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||
Sbjct 347 TAGGATACGGATATGTCTGGTTCAACAGAAAAGAGGACGCACAGTTGGCTGTAGAAGCCA 406
Query 456 TGAACGGAAAGTTCTTTGATGGCAGGTTCATTCTTGTTAAATTTGGTCAGCCTGGTTTGT 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 407 TGAACGGAAAGTTCTTTGATGGCAGGTTCATTCTTGTTAAATTTGGTCAGCCTGGACTGT 466
Query 516 CCCGTCGCCGGAGACCACATTCCGATTTCCTTTTTGTAA 554
|||||||||||||||||||||||| ||||||||| ||||
Sbjct 467 CCCGTCGCCGGAGACCACATTCCGGTTTCCTTTT-GTAA 504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25046756469
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5