BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G19040.1 Length=1577 Score E Sequences producing significant alignments: (Bits) Value Ahg941436 jgi|Araly1|941436|scaffold_601980.1 1548 0.0 > Ahg941436 jgi|Araly1|941436|scaffold_601980.1 Length=1031 Score = 1548 bits (838), Expect = 0.0 Identities = 960/1020 (94%), Gaps = 4/1020 (0%) Strand=Plus/Plus Query 16 AAGGAGTTTTTATAAGAATGAAGCCATGCATGACGGCTCTAAGACAAGTGATTCAACCAT 75 ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 4 AAGGAATTTTTATAAGAATGAAGCCATGCATGACGGCTCTAAGGCAAGTGATTCAACC-C 62 Query 76 TGTCGTTGAACTTCCAAGGAAACATGGTGGACGTTCCGTTTTTCCGGCGAAAAGACAAGG 135 | | |||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 63 T-T-GTTGAACTTCCAAGGAAACATGGTCGATGTTCCGTTTTTCCGGCGAAAAGACAAGG 120 Query 136 TTGTTTTCGTCATGGGAGCCACCGGAACCGGCAAATCTCGTCTAGCCATTGACCTAGCCA 195 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TTGTTTTCGTTATGGGCGCCACCGGAACCGGCAAATCTCGTCTAGCCATTGACCTAGCCA 180 Query 196 CTCGTTTTCCGGCGGAGATTGTAAACTCCGACAAGATCCAGGTCTATAAAGGTCTAGACA 255 ||||||| ||||||||||| ||||||||||||||||| || |||||||| |||||||||| Sbjct 181 CTCGTTTCCCGGCGGAGATCGTAAACTCCGACAAGATTCAAGTCTATAAGGGTCTAGACA 240 Query 256 TTGTGACTAACAAAGTCACTCCTGAGGAAAGCCTTGGCGTTCCTCACCACCTTCTCGGCA 315 | ||||| |||||||||||||||||||||||||||||| | ||||||||||| ||||||| Sbjct 241 TCGTGACAAACAAAGTCACTCCTGAGGAAAGCCTTGGCATCCCTCACCACCTCCTCGGCA 300 Query 316 CCGTCCACGACACTTACGAAGATTTCACGGCGGAGGATTTTCAGCGTGAAGCAATCAGGG 375 |||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||| Sbjct 301 CCGTCCACGACACTTACGAAGATTTCACGGCGGAGGATTTCCAGGGGGAAGCAATCAGGG 360 Query 376 CCGTCGAGTCAATCGTCCAGAGAGACCGTGTCCCGATCATAGCCGGTGGTTCCAATTCTT 435 |||| ||||||||||||||||| | |||||||||||||||||| |||||||||||||||| Sbjct 361 CCGTTGAGTCAATCGTCCAGAGGGGCCGTGTCCCGATCATAGCTGGTGGTTCCAATTCTT 420 Query 436 ACATCGAGGCTCTGGTCAACGATTGCGTTGACTTCCGGTTAAGGTATAATTGTTGCTTCT 495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 ACATCGAGGCTCTGGTCAACGATTGCGTTGACTTCCGGTTAAGGTATAATTGTTGCTTCT 480 Query 496 TGTGGGTCGACGTCTCTAGACCGGTTTTACACTCGTTTGTCTCGGAGCGAGTTGATAAGA 555 |||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||| Sbjct 481 TGTGGGTCGACGTCTCAAGACCGGTTTTACACTCTTTTGTCTCGGAGCGCGTCGATAAGA 540 Query 556 TGGTTGATATGGGTCTCGTCGACGAGGTTCGCCGCATCTTCGATCCGTCTTCGTCGGATT 615 ||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||| Sbjct 541 TGGTTGAGATGGGTCTCGTCGGCGAGGTTCGCCGCATCTTCGATTCGTCTTCGTCGGATT 600 Query 616 ACTCCGCTGGAATTCGCCGAGCCATTGGAGTTCCAGAGCTCGACGAATTTCTCCGTTCGG 675 |||| || || || || || ||||| |||||||||||||| |||||||||||||| ||| Sbjct 601 ACTCAGCCGGTATCCGGCGTGCCATCGGAGTTCCAGAGCTTGACGAATTTCTCCGGGCGG 660 Query 676 AGATGCGGAATTATCCGGCGGAGACGACGGAGAGACTTCTTGAAACGGCGATCGAGAAGA 735 || | |||||| |||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 661 AGTTACGGAATAATCCGGCGGAGACGACGGAGAGACTTCTTGAAACGGCGATAGAGAAAA 720 Query 736 TTAAAGAGAACACTTGTTTGCTTGCGTGTAGACAATTGCAGAAGATTCAAAGGCTTTACA 795 ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| Sbjct 721 TTAAAGAGAACACTTGTTTGCTTGCGTGTCGACAATTGCAGAAGATTCAAAGACTTTACA 780 Query 796 AGCAGTGGAAGTGGAACATGCACCGTGTCGACGCGACGGAGGTTTTTCTCCGACGAGGAG 855 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 AGCAGTGGAAATGGAACATGCACCGTGTCGACGCGACGGAGGTTTTTCTCCGACGAGGAG 840 Query 856 AAGAAGCTGATGAGGCTTGGGATAACTCAGTGGCTCATCCGAGCGCACTCGCCGTCGAAA 915 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 AAGAAGCTGATGAGGCTTGGGATAACTCAGTGGCTCATCCGAGCGCACTCGCCGTCGAAA 900 Query 916 AGTTCCTTAGTTACAGCGATGACCACCATTTGGAAGGCGCCAATATTCTCCTACCGGAGA 975 |||||||| ||||| |||||||||||||||||| |||||||||||||||||||| |||| Sbjct 901 GGTTCCTTAATTACAACGATGACCACCATTTGGACGGCGCCAATATTCTCCTACCTGAGA 960 Query 976 TCTCTGCCGTTCCGCCTCTTCCAGCCGCCGTGGCGGCGATTTCCCGGTGAGGTAA-AACA 1034 |||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 961 TCTCCGCCGTTCCACCTCTTCCAGCCGCCGTGGCGGCGATTTCCCGGTGAGGTAATAACA 1020 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59077969995 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5