BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19040.1
Length=1577
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941436 jgi|Araly1|941436|scaffold_601980.1 1548 0.0
> Ahg941436 jgi|Araly1|941436|scaffold_601980.1
Length=1031
Score = 1548 bits (838), Expect = 0.0
Identities = 960/1020 (94%), Gaps = 4/1020 (0%)
Strand=Plus/Plus
Query 16 AAGGAGTTTTTATAAGAATGAAGCCATGCATGACGGCTCTAAGACAAGTGATTCAACCAT 75
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 4 AAGGAATTTTTATAAGAATGAAGCCATGCATGACGGCTCTAAGGCAAGTGATTCAACC-C 62
Query 76 TGTCGTTGAACTTCCAAGGAAACATGGTGGACGTTCCGTTTTTCCGGCGAAAAGACAAGG 135
| | |||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 63 T-T-GTTGAACTTCCAAGGAAACATGGTCGATGTTCCGTTTTTCCGGCGAAAAGACAAGG 120
Query 136 TTGTTTTCGTCATGGGAGCCACCGGAACCGGCAAATCTCGTCTAGCCATTGACCTAGCCA 195
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTGTTTTCGTTATGGGCGCCACCGGAACCGGCAAATCTCGTCTAGCCATTGACCTAGCCA 180
Query 196 CTCGTTTTCCGGCGGAGATTGTAAACTCCGACAAGATCCAGGTCTATAAAGGTCTAGACA 255
||||||| ||||||||||| ||||||||||||||||| || |||||||| ||||||||||
Sbjct 181 CTCGTTTCCCGGCGGAGATCGTAAACTCCGACAAGATTCAAGTCTATAAGGGTCTAGACA 240
Query 256 TTGTGACTAACAAAGTCACTCCTGAGGAAAGCCTTGGCGTTCCTCACCACCTTCTCGGCA 315
| ||||| |||||||||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 241 TCGTGACAAACAAAGTCACTCCTGAGGAAAGCCTTGGCATCCCTCACCACCTCCTCGGCA 300
Query 316 CCGTCCACGACACTTACGAAGATTTCACGGCGGAGGATTTTCAGCGTGAAGCAATCAGGG 375
|||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||
Sbjct 301 CCGTCCACGACACTTACGAAGATTTCACGGCGGAGGATTTCCAGGGGGAAGCAATCAGGG 360
Query 376 CCGTCGAGTCAATCGTCCAGAGAGACCGTGTCCCGATCATAGCCGGTGGTTCCAATTCTT 435
|||| ||||||||||||||||| | |||||||||||||||||| ||||||||||||||||
Sbjct 361 CCGTTGAGTCAATCGTCCAGAGGGGCCGTGTCCCGATCATAGCTGGTGGTTCCAATTCTT 420
Query 436 ACATCGAGGCTCTGGTCAACGATTGCGTTGACTTCCGGTTAAGGTATAATTGTTGCTTCT 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACATCGAGGCTCTGGTCAACGATTGCGTTGACTTCCGGTTAAGGTATAATTGTTGCTTCT 480
Query 496 TGTGGGTCGACGTCTCTAGACCGGTTTTACACTCGTTTGTCTCGGAGCGAGTTGATAAGA 555
|||||||||||||||| ||||||||||||||||| |||||||||||||| || |||||||
Sbjct 481 TGTGGGTCGACGTCTCAAGACCGGTTTTACACTCTTTTGTCTCGGAGCGCGTCGATAAGA 540
Query 556 TGGTTGATATGGGTCTCGTCGACGAGGTTCGCCGCATCTTCGATCCGTCTTCGTCGGATT 615
||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 541 TGGTTGAGATGGGTCTCGTCGGCGAGGTTCGCCGCATCTTCGATTCGTCTTCGTCGGATT 600
Query 616 ACTCCGCTGGAATTCGCCGAGCCATTGGAGTTCCAGAGCTCGACGAATTTCTCCGTTCGG 675
|||| || || || || || ||||| |||||||||||||| |||||||||||||| |||
Sbjct 601 ACTCAGCCGGTATCCGGCGTGCCATCGGAGTTCCAGAGCTTGACGAATTTCTCCGGGCGG 660
Query 676 AGATGCGGAATTATCCGGCGGAGACGACGGAGAGACTTCTTGAAACGGCGATCGAGAAGA 735
|| | |||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 661 AGTTACGGAATAATCCGGCGGAGACGACGGAGAGACTTCTTGAAACGGCGATAGAGAAAA 720
Query 736 TTAAAGAGAACACTTGTTTGCTTGCGTGTAGACAATTGCAGAAGATTCAAAGGCTTTACA 795
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 721 TTAAAGAGAACACTTGTTTGCTTGCGTGTCGACAATTGCAGAAGATTCAAAGACTTTACA 780
Query 796 AGCAGTGGAAGTGGAACATGCACCGTGTCGACGCGACGGAGGTTTTTCTCCGACGAGGAG 855
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 AGCAGTGGAAATGGAACATGCACCGTGTCGACGCGACGGAGGTTTTTCTCCGACGAGGAG 840
Query 856 AAGAAGCTGATGAGGCTTGGGATAACTCAGTGGCTCATCCGAGCGCACTCGCCGTCGAAA 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AAGAAGCTGATGAGGCTTGGGATAACTCAGTGGCTCATCCGAGCGCACTCGCCGTCGAAA 900
Query 916 AGTTCCTTAGTTACAGCGATGACCACCATTTGGAAGGCGCCAATATTCTCCTACCGGAGA 975
|||||||| ||||| |||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 901 GGTTCCTTAATTACAACGATGACCACCATTTGGACGGCGCCAATATTCTCCTACCTGAGA 960
Query 976 TCTCTGCCGTTCCGCCTCTTCCAGCCGCCGTGGCGGCGATTTCCCGGTGAGGTAA-AACA 1034
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 961 TCTCCGCCGTTCCACCTCTTCCAGCCGCCGTGGCGGCGATTTCCCGGTGAGGTAATAACA 1020
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59077969995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5