BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19050.1
Length=1304
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488788 jgi|Araly1|488788|fgenesh2_kg.6__1922__AT5G19050.1 2037 0.0
> Ahg488788 jgi|Araly1|488788|fgenesh2_kg.6__1922__AT5G19050.1
Length=1308
Score = 2037 bits (1103), Expect = 0.0
Identities = 1241/1308 (95%), Gaps = 7/1308 (1%)
Strand=Plus/Plus
Query 1 CGAAAACGAAATCTGAAACGGTCACACACAGTCGCTAGATATGTCTCTCTCGCTTCCATC 60
||||| ||||||||||||| | ||||||||||||| | | |||||||||||||| || ||
Sbjct 1 CGAAAGCGAAATCTGAAACCGCCACACACAGTCGCCAAAAATGTCTCTCTCGCTACCCTC 60
Query 61 TTCTTCCG-C-C-GC--C-GCTGCTGCGGCGTCAACATCGGGATCATCATCTTCTCCGGC 114
|||||||| | | || | || || |||||||| |||||||||||||| |||||||||||
Sbjct 61 TTCTTCCGCCGCAGCAGCAGCGGCGGCGGCGTCTACATCGGGATCATCGTCTTCTCCGGC 120
Query 115 GGCTGCTTCGTCTTCCTCAACAACCACGTCATGGTTCTCCGGGATCGTTCGTGGTCGTGG 174
||||||||||||||||||||| |||||||| ||||||||||| |||||||| || |||||
Sbjct 121 GGCTGCTTCGTCTTCCTCAACGACCACGTCCTGGTTCTCCGGAATCGTTCGCGGCCGTGG 180
Query 175 TGATAAATCCGGCACCGCGAAGCTATCTAAAAGCTCTTCCATGGCTGGAGGAGGAAGCGG 234
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGACAAATCCGGCACCGCGAAGCTATCTAAAAGCTCTTCCATGGCTGGAGGAGGAAGCGG 240
Query 235 AAGCGGAGATTACGGTGGACCAATCAAAGGGAAGAATCAATTTCGCGGTGTTTTGTTCAA 294
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 241 AAGCGGAGATTACGGTGGACCAATCAAAGGGAAGAATCAATTTCGAGGAGTTTTGTTCAA 300
Query 295 ATACGGTCCTAAATCAATTCAGGTTGCTTTTAAGACCGGAGAGTATAAACAACAAGTGAT 354
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATACGGTCCCAAATCCATCCAGGTTGCTTTTAAGACCGGAGAGTATAAACAACAAGTGAT 360
Query 355 ATTTATCGGTGGATTAACTGATGGACTTTTAGCTACTGATTACTTGGAACCTCTTGCGAT 414
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 ATTTATCGGTGGATTAACCGATGGACTTTTAGCTACTGATTACTTGGAACCTCTTGCAAT 420
Query 415 TGCTTTGGATAAAGAGAAATGGTCACTTGTTCAACTACTGATGTCTTCTTCATATTCTGG 474
|||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 421 TGCTTTGGATAAAGAGAATTGGTCACTTGTTCAACTACTGATGTCCTCGTCATATTCTGG 480
Query 475 ATTTGGCACTTCCAGCTTGAAACAAGATGCACAAGAAATCGACCAGCTAATAAACCACCT 534
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 481 ATTTGGCACTTCCAGCTTGAAACAAGATGCACAAGAAATTGACCAGCTAATAAATTACCT 540
Query 535 CATCAACAAAGAGAATTCTGAAGGTGTTGTTCTGCTTGGTCATAGCACTGGCTGTCAGGA 594
|||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 541 CATCAACAAAGAAAATTCTGAAGGCGTTGTTCTACTTGGTCATAGCACTGGCTGCCAGGA 600
Query 595 CATTGTGTATTATATGGGAACAAATGCGGCATGCTCCCGAGCTGTCCGGGCTGCAATTTT 654
||||||||| ||||||||||||||||| |||||||||||||||||| | |||||||||||
Sbjct 601 CATTGTGTACTATATGGGAACAAATGCTGCATGCTCCCGAGCTGTCAGAGCTGCAATTTT 660
Query 655 ACAGGCACCAGTCAGCGATAGAGAGTACAAAGCAACGCTTCCTGAAACACCTGCTATGAT 714
|||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 661 GCAGGCACCGGTCAGCGACAGAGAGTACAAAGCAACGCTTCCTGAAACACCAGCTATGAT 720
Query 715 AGACTTGGCTGCAAACATGATAAAAGAAGGTCGAGGAGAGGAGCTAATGCCTAGAGAAGC 774
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 721 AGACTTGGCTGCAAACATGATAAAAGAAGGTCGAGAAGAGGAGCTAATGCCTAGAGAAGC 780
Query 775 TGATCCTTGTGCTCCAATCTCTGCTTATAGATATCACTCCCTCTGCGCTTACATGGGAGA 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGATCCTTGTGCTCCAATCTCTGCTTATAGATATCACTCCCTCTGCGCTTACATGGGAGA 840
Query 835 TGACGATATGTTTAGTTCTGACCTTAGTGATGATCAGTTGAAAACTAGACTTGGCCATAT 894
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 841 CGACGATATGTTTAGTTCTGACCTTAGTGATGATCAGTTGAAAACTAGACTTGGGCATAT 900
Query 895 GGCTAACACACCTTGTCAGGTGATTTTCTCCATGGGTGATGAGTATGTACCAGATTATGT 954
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GGCTCACACACCTTGTCAGGTGATTTTCTCCATGGGTGATGAGTATGTACCAGATTATGT 960
Query 955 CGACAAAAAAGCATTGGTCAATAGATTAAGTAAAGCAATGGGAGGAGCAGAGAAAGTGGA 1014
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CGACAAAAAAGCACTGGTTAATAGATTAAGTAAAGCAATGGGAGGAGCAGAGAAAGTGGA 1020
Query 1015 GATAGAGCATGGGAATCATTCTCTCTCCAATAGAGTTCATGAAGCTGTTCAAGCCATCAT 1074
|||| |||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1021 GATACAGCATGGGAACCACTCTCTCTCCAATAGAGTTCATGAAGCTGTTCAAGCCATTAT 1080
Query 1075 TGGTTTTGTCAAAAGAGAAGGACCCAGTGGTTGGGATGATCCTTGGAGCTAAATCTGCTT 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1081 TGGTTTTGTCAAAAGAGAAGGACCCAGTGGTTGGGATGATCCTTGGAGCTAAATCTGTTT 1140
Query 1135 TTTCCATTTATGTGGATGAAAAACTTATCCAAATCTGAATCTCATGAATTAATTCACTTC 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1141 TTTCCATTTATGTGGATGAAAAACTTATCCAAATCTGAATCTCATGAATTAATTCACATC 1200
Query 1195 TTGGCTGATTCGTAACCATTTATCCTTaaaaagtaaaaaagtaaaTTGTTGTCCTTTTGT 1254
||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1201 TTGGCTGATTCAAAACCATCTATCCTTAAAAAGTAAAAAAGTAAATTATTGTCCTTTTGT 1260
Query 1255 TCTGATATAT-ACTTGGATCATTAAGAAAAGTGTCTTCCTTATTATAT 1301
|||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1261 TCTGATATATTACTTGGATCATTAAGAAAAATGTCTTCCTTATTATAT 1308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48759210843
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5