BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19060.1
Length=2105
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488789 jgi|Araly1|488789|fgenesh2_kg.6__1923__AT5G19060.1 2429 0.0
> Ahg488789 jgi|Araly1|488789|fgenesh2_kg.6__1923__AT5G19060.1
Length=1830
Score = 2429 bits (1315), Expect = 0.0
Identities = 1590/1721 (92%), Gaps = 26/1721 (2%)
Strand=Plus/Plus
Query 165 AATTTGATTTCTTGCCGATTTGTCATCATCTTCTTCAGATTTCTTCAAATGCCGAAGAAA 224
||||||||||||| |||| |||||||| | ||| |||| ||||||| |||||| |||||
Sbjct 41 AATTTGATTTCTTTCCGA-TTGTCATC-T-TTC-TCAGGCTTCTTCAGATGCCGGAGAAA 96
Query 225 GTAGTGATTCCGTCTCTGGCGATGAGTCCTCTACATCAATGGAGATTAAGTGCGCTAACA 284
|||||||||||| || |||| |||||||||| ||||||||||||||||| || |||||
Sbjct 97 GTAGTGATTCCG--TC-GGCGGTGAGTCCTCTGCATCAATGGAGATTAAGCGCTTTAACA 153
Query 285 TCTCTCGTCTTCTTCCTCATAGTTGTTGTCTGGAGCATTGACAGTTGTTCAATCAGAAGC 344
|| ||||||||||||||||| ||||||||||||||||||||| ||||| |||||| ||||
Sbjct 154 TCCCTCGTCTTCTTCCTCATGGTTGTTGTCTGGAGCATTGACGGTTGTACAATCAAAAGC 213
Query 345 TTCATCAAATCATGGAGATTCAACTCTTACTCTATACGACTCACTTCTC--------CT- 395
|||||| ||||||||||||||||| ||||||| |||||||||||||||| ||
Sbjct 214 TTCATCGAATCATGGAGATTCAACGCTTACTCCATACGACTCACTTCTCATGGAGATCTA 273
Query 396 CCTTCTCTGGATCTGGATCCGACCCGAGTAAAGCTTGCCTGGATCTCCGTCGAGCAAGAG 455
|||| ||||||||| ||||||||||||| ||| || | |||||||||||||||||||||
Sbjct 274 ACTTCACTGGATCTGAATCCGACCCGAGTGAAGTTTTCTTGGATCTCCGTCGAGCAAGAG 333
Query 456 CAGAACTTCACAGCGAATGTACTCAAAAACTGGTTAGCTCCGGGTGGAGAGAAGTGCAGA 515
||||||||||| ||||||||||| ||||||||| |||||||||| |||||||||||||||
Sbjct 334 CAGAACTTCACGGCGAATGTACTGAAAAACTGGCTAGCTCCGGGAGGAGAGAAGTGCAGA 393
Query 516 GAAGCAAACACCGTTGAGATTTCTGTTCCGGGAATCGAAGGGAAGGGTTTAGTAGAGTTA 575
|||| ||| ||||| ||||||| ||||||||||||||| ||||||| |||||||||||||
Sbjct 394 GAAGGAAAGACCGTCGAGATTTTTGTTCCGGGAATCGACGGGAAGGATTTAGTAGAGTTA 453
Query 576 ACGGCTGGTGAGATTCACGAATTCAGATTTCATTCTCTAGATGATTCTGGGGAACGAGTT 635
|||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||
Sbjct 454 ACGGCTGGTGAGATTCACGAATTCAGATTTCAATCTTTAGATGATTCTGGAAAACGAGTT 513
Query 636 TGTATCGGTGGAGATTACTTCGAGACTGATCTTTCCGGTGAAAACTGGAAATCAAGACCA 695
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 514 TGTATCGGTGGAGATTACTTCGAAACTGATCTTTCCGGTGAAAACTGGAAATCAAGACCA 573
Query 696 CCGGTGAAAGATTTAGGAAACGGAACTTACTCTTTATCTCTTCAGATTCATCCTGATTTC 755
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 CCGGTGGAAGATTTAGGAAACGGAACTTACTCTTTATCTCTTCAGATTCATCCTGATTTC 633
Query 756 GCCGGAGATTATGATCTCACCGTTGTTTTACTCTTCCGTCGCTTCCAAGGTCTTAAACTT 815
|||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||| ||
Sbjct 634 GCCGGAGATTATAATCTCACTGTTGTTTTACTCTTCCGTCACTTCCAAGGTCTTAAATTT 693
Query 816 AG-CCCTGCACGCTTCGCATTCAACAGAACGCTACGAAATTTCAAACTACGGTTTATCAA 874
|| ||| || |||||||| ||||||| || |||||| |||||||||||||||||||| ||
Sbjct 694 AGTCCC-GCGCGCTTCGCTTTCAACAAAAAGCTACGGAATTTCAAACTACGGTTTATTAA 752
Query 875 GAAACCTC-ACGTTGTTTTACCGGAGCTCCGGAGATGTGAATTG-TCCGATTTCGACAGA 932
||| || | ||||||||||||||||||| ||||||||||| | | |||||||||||||||
Sbjct 753 GAACCC-CGACGTTGTTTTACCGGAGCTTCGGAGATGTGA-TCGGTCCGATTTCGACAGA 810
Query 933 GATGTTTGGTCTGGCCGGTGGATTAGGCTTGGTAAGAACGACGAGTGTGAAATCAGCAAT 992
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 GATGTTTGGTCCGGACGGTGGATTAGGCTTGGTAAGAACGACGAGTGTGAAATCAGCAAC 870
Query 993 GATGGACGTTACCGTTGCTTACCAGATGGTTACCGTTGCCGGGAACCATGGTGCGACGGA 1052
|| || ||||||||||||||||| ||||||| |||||||||| |||||||||||||||||
Sbjct 871 GACGGTCGTTACCGTTGCTTACCGGATGGTTTCCGTTGCCGGAAACCATGGTGCGACGGA 930
Query 1053 GCTTTATCGGCGTTAGAAAGCAATGGTTGGGTTTACTCGAGTCATTGCTCGTTTAAGCTA 1112
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 931 GCTTTATCGGAGTTAGAAAGCAACGGTTGGGTTTACTCGAGTCATTGCTCGTTTAAGCTC 990
Query 1113 TTCTCTAGTGAATCAGCTTGGGATTGTTTGAAGAACAAATGGATTTTCTTCTGGGGTGAC 1172
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 991 TTCTCTGGTGAATCAGCTTGGGATTGTTTGAAGAACAAATGGATTTTCTTCTGGGGAGAC 1050
Query 1173 TCTAATCATGTTGATTCGATCAGAAACTTGTTGAACTTTGTCTTGGGTCATCCGGAGATT 1232
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1051 TCTAATCATGTTGATTCGATCAGAAACTTGTTGAATTTTGTCTTGGGTCATCCAGAGATC 1110
Query 1233 GGTGCTGTTCCTAGGAGGTTTGATTTGAAGTTCTCGAATCCGAAGAACTCATCGGAAACA 1292
|| || || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GGGGCCGTGCCAAGGAGGTTTGATTTGAAGTTCTCGAATCCGAAGAACTCATCGGAAACA 1170
Query 1293 GTTAGGATCACGAGTATCTTCAATGGACATTGGAACGAGACTCAAAACTATCTAGGTCTT 1352
||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1171 GTTAGGATCACGAGTATTTTCAATGGACATTGGAACGAGACACAAAACTATCAAGGTCTT 1230
Query 1353 GATTCACTTGAAGATGATAGCTTTAGAGAATTGCTTAAAAGCTATTTCGTCGAAGAGACC 1412
||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1231 GATTCACTTAAAGATGATGGCTTTAGAGAATTGCTTAAAAGCTATTTCGCCGAAGAGACC 1290
Query 1413 GGTGTACCGGACGTGATGATCGTTAACTCGGGTCTACACGACGGTATTCACTGGTCTAAC 1472
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1291 GGTGTACCGGACGTGATGATCGTTAACTCGGGTCTACACGACGGTGTTCACTGGTCTAAC 1350
Query 1473 CTTAGAGCATTTACGAAAGGAGCAGAAACCGCGGCTGCG-TTCTGGAGGAACGTTTTCGA 1531
|||||||| ||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 1351 CTTAGAGCCTTTACGAAAGGAGCAGAAACCGCGGCT-CGGTTCTGGAGAAACGTTTTCGA 1409
Query 1532 CTCGGTGAAAGCCCGGGGATTGCGACCTCCGAAAGTGATTTTCAGGAACACGATAGCGAC 1591
||||||||||||||| ||||||| ||||||| ||||| |||| ||||||||||| |||||
Sbjct 1410 CTCGGTGAAAGCCCGCGGATTGCAACCTCCGGAAGTGGTTTTTAGGAACACGATCGCGAC 1469
Query 1592 GGGCGGTTACGCGAGGAAGCTTGCGTTTAACCCGAGCAAGATGGAAGTGTACAATGGGGT 1651
||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1470 GGGTGGTTACGCGAGGACGCTTGCGTTTAACCCAAGCAAGATGGAAGTGTACAATGGGGT 1529
Query 1652 GTTTTTAGAGAAAATGAAGGGGTTAGGATTGGTCTCAAGTGTGATTGATAACTTTGACAT 1711
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 1530 GTTTTTGGAGAAAATGAAGGGGTTAGGATTGGTCTCGAGTGTGATTGATAACTTCGATAT 1589
Query 1712 GACGTATCCGTGGCATTTTGATAACCGGTGTAACGATGGCGTTCACTATGGAAGACCTCC 1771
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||| ||||
Sbjct 1590 GACGTATCCGTGGCATTTTGATAACCGGTGTAACGACGGGGTTCACTATGGGAGAGCTCC 1649
Query 1772 GGCGAA-AGTGCGGTGGATAGACGGCGAGATTGGGCATCAGTACTTTGTTGATCTCATGC 1830
|||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1650 GGCGAAGA-TGCGGTGGAGAGACGGCGAGATTGGGCATCAGTACTTTGTTGATCTCATGC 1708
Query 1831 TTGTTCATGTCTTGTTAAATGCAGTTTGTCTACGTTAGAGT 1871
||||||||||||||||||||||| ||||| || | ||||||
Sbjct 1709 TTGTTCATGTCTTGTTAAATGCAATTTGTGTAAGATAGAGT 1749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79189619355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5