BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19070.1
Length=1357
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488790 jgi|Araly1|488790|fgenesh2_kg.6__1924__AT5G19070.1 1688 0.0
> Ahg488790 jgi|Araly1|488790|fgenesh2_kg.6__1924__AT5G19070.1
Length=1305
Score = 1688 bits (914), Expect = 0.0
Identities = 1038/1094 (95%), Gaps = 24/1094 (2%)
Strand=Plus/Plus
Query 266 CCGGCAACGCCGTTGAAATAGTCACCGGAGACCATTTTGCATCGTAGAGTTCGCCTTTTA 325
|||||||||||||||||||||||||||||| | |||| ||||||||||| ||||| || |
Sbjct 234 CCGGCAACGCCGTTGAAATAGTCACCGGAGGCGATTTAGCATCGTAGAG-TCGCCGTTCA 292
Query 326 TGGCGTTCACGTGGGGATCTGCTCTCCGGATTTCTGTTCTCCTTATCCTTGTAGCTGCAA 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 TGGCGTTCACGTGGGGATCTGCTCTCCGGATTTCTGTTCTCCTTATCCTTGTAGCTGCAA 352
Query 386 TTGTCTTAGCTTGTTATTTTCTCCCTGTTGAGAAGCTATTGAAGGATTTTTTGTTATGGG 445
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 353 TTGTCTTAGCTTGTTATTTTCTCCCCGTTGAGAAGCTATTGAAGGATTTTTTGTTATGGG 412
Query 446 TTGAACAAGATCTAGGGCCTTGGGGACCTTTTGCCCTAGCTGTTGCGTACATTCCTCTAA 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TTGAACAAGATCTAGGGCCTTGGGGACCTTTTGCCCTAGCTGTTGCGTACATTCCTCTAA 472
Query 506 CAGTTTTGGCTGTTCCTGCCTCGGTTCTCACGCTCGGTGGTGGCTACCTTTTTGGGCTGC 565
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 473 CAGTTTTGGCTGTTCCTGCCTCGGTTCTCACGATCGGTGGTGGCTACCTTTTTGGGCTGC 532
Query 566 CAATTGGTTTTGTGGCGGACTCAGTCGGTGCTACACTTGGCTCAGGAGCTGCATTTCTAC 625
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 533 CAATTGGTTTTGTGGCGGACTCAGTCGGTGCTACACTTGGCTCAGGAGCCGCATTTCTTC 592
Query 626 TAGGCCGTACGATTGGAAAACCTTTTGTAGTTGCAAAATTAAAGGATTATCCTCAGTTTC 685
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TAGGCCGTACAATTGGAAAACCTTTTGTAGTTGCAAAATTAAAGGATTATCCTCAGTTTC 652
Query 686 AATCAGTGGCACTCGCGATAGAGAAATCCGGCTTCAAGATATGCTTGTTGCTCCGGCTTG 745
| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 653 AGTCAGTGGCACTCGCGATTGAGAAATCCGGCTTCAAGATATGCTTGCTGCTCCGGCTTG 712
Query 746 CTCCTCTTCTTCCGTTCAGCATGTTGAACTACCTCTTATCTGTCACGCCAATTCGGCTAG 805
|||||||||| || ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 713 CTCCTCTTCTCCCCTTCAGCATGTTGAACTACCTCTTATCTGTAACACCAATTCGGCTAG 772
Query 806 GTCCATACTTGCTTTCTTCGTGGTTAGGGATGATGCCAATAACACTTGCGTTAGTGTATG 865
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 773 GTCCATACTTGCTTTCTTCTTGGTTAGGGATGATGCCAATAACACTTGCGTTAGTGTATG 832
Query 866 TTGGAACAACTCTAAAAGACCTTTCTGATGTAACTCACAAGTGGAGCGAGTTCTCGCCAG 925
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 833 TTGGAACAACTCTAAAAGACCTTTCTGATGTAACTCACAAGTGGAGCGAATTCTCGCTAG 892
Query 926 GTCGCTGGGCGTTCTTGATTTCGAGCCTTGTAATATCCGTGATATTAATGGTGTGTGTTA 985
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GCCGCTGGGCGTTCTTGATTTCGAGCCTTGTAATATCCGTGATATTAATGGTGTGTGTTA 952
Query 986 CAAAGGTGGCGAAGGACGCTCTAAGAAAAGCTTTAGCAGAGCACGGAGGAGACATGAACG 1045
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 CGAAGGTGGCGAAGGACGCTCTAAGAAAAGCTTTAGCAGAGCACGGAGGAGACATGAACG 1012
Query 1046 AAGCGGTTGCAGCCTTGCCGGAGCTGACCGTTACTGATGATGCTTCGACGGATTTAAATG 1105
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 AAGCGGTTGCAGCCTTGCCAGAGCTGACCGTTACTGATGATGCTTCGACGGATTTAAATG 1072
Query 1106 AGCCTCTCTTGATAAAGATAGATGCACAACAACCTCAAGACCAAGTAAACCATAGTCATT 1165
|||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1073 AGCCTCTCTTAATAAAGATAGATGCTCAACAACCTCAGGACCAAGTAAACCATAGTCATT 1132
Query 1166 AAAATTAAGATGATGAATACTTACTTTGTATAATCTTTAT-TTTAACATACAAAGCTTAG 1224
|||| | ||| | ||||||||||||| |||||| |||||||| |||
Sbjct 1133 AAAA--A------------CTT--T--GTATAATCTTTATCTTTAACTTACAAAGCATAG 1174
Query 1225 TTTTCTTGGTTTGTATAATAATAACATAGATTAAAAATTATTTTTAAAAAGTTATTTTT- 1283
|||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1175 TTTTATTGGTTTGTATAATAA---CATAGATTAAAAATTATTTTTAAAAAGTTGTTTTTT 1231
Query 1284 CTTAGTAACTTTGAGATGTAATTATTAGTTCACAGAGATTTAAAATATTGGATGAATAAA 1343
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1232 CTTAATAACTTTGAGATGTAATTATTAGTTCACAGGGATTTAAAATATTGGATGAATAAA 1291
Query 1344 AAGAAACTAAATGG 1357
||||||||||||||
Sbjct 1292 AAGAAACTAAATGG 1305
Score = 372 bits (201), Expect = 4e-102
Identities = 225/236 (95%), Gaps = 3/236 (1%)
Strand=Plus/Plus
Query 1 TACGCGCCACGCGGTTTAATGAAACCAGTCACAGTTCTAATGCTTACGCTAAACATGGAG 60
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1 TACGCGCCACGCGGTTTAATGTAACCAGTCACAGTTCTTATGCTTACGCTAAACATGGAG 60
Query 61 TCTCCAAACCAAATCAACGACAATTGAATCCACACCTTCACGAAACCCCCCAAAGTTTTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCCAAACCAAATCAACGACAATTGAATCCACACCTTCACGAAACCCCCCAAAGTTT-- 118
Query 121 GTCTTTTTCGGTTTCGGATTACATCATCTCCAAGACAAGCACCAGCATCAGATTTTCTGC 180
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||
Sbjct 119 GTCTTTTTCGGTTTCGGATTACATCATCTCCAAGGCAAGCACCAGCACCAGATTTTCCGC 178
Query 181 ATCCTTAAAGATCTCGTTGCGGTTTTTGTCGGAATTGTTTCGATTTGTTGTGGTTC 236
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 179 ATCCTTAAAGATCTCGTTGCGGTTTTTGTCGGAAAA-TTTCGGTTTGTTGTGGTTC 233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50779725444
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5