BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19080.1
Length=1516
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941442 jgi|Araly1|941442|scaffold_601986.1 1238 0.0
> Ahg941442 jgi|Araly1|941442|scaffold_601986.1
Length=853
Score = 1238 bits (670), Expect = 0.0
Identities = 797/858 (93%), Gaps = 10/858 (1%)
Strand=Plus/Plus
Query 366 ACAATGGGTTTAATCCGATGATGAGGCCGGTTTAT-TTCGGTCCGACTCCGGTTGCGGTT 424
||||||||||||||||||||||||| ||||||| | ||||||||| ||| ||| |||||
Sbjct 1 ACAATGGGTTTAATCCGATGATGAGACCGGTTT-TCTTCGGTCCGCCTCAAGTTCCGGTT 59
Query 425 ATGGAACCGCCTGCACCTTATGTGGAGCATCAGACCGCTAAGAAGGTTAAGAACGATGTC 484
||| |||||||||||||||| ||||||||||||| ||| |||||||| ||||||||||||
Sbjct 60 ATGCAACCGCCTGCACCTTACGTGGAGCATCAGAGCGCCAAGAAGGTGAAGAACGATGTC 119
Query 485 AATGTGAATAAAGCTACGGTGAGGCTCGTAGCTGACGATCTTAACCCTGGTCATTATCTT 544
|||||| |||||||||||||| |||||| ||| ||||||||||||||||||||| |||||
Sbjct 120 AATGTGCATAAAGCTACGGTGGGGCTCGAAGCAGACGATCTTAACCCTGGTCATCATCTT 179
Query 545 GTTTCCTTCGTCTTCGATGCCTTATTCGATGGCAGTTTCACTATCATATTTTTTGGAGAA 604
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| | ||
Sbjct 180 GTTTCTTTCGTCTTCGATGCCTTATTCGACGGCAGTTTCACTATCATATTTTTTGCA-AA 238
Query 605 -GAGGAATCAAAGTGCACAATCGTCCCTCATTTACCAGAAGCTTTCCCACCAATCAAAGT 663
||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 239 GGAGGAATCAAACTGCACAATCGTCCCGGATTTACCAGAAGCTTTCCCACCGATCAAAGT 298
Query 664 CCCTTTCCAA-AAAGGTGCCGGGCAGAAGTTTCTACAAGCTCCAGGGACAGGAATCGACC 722
|||||| ||| |||||| ||| |||||||||||||||||||||||||||||||| |||||
Sbjct 299 CCCTTT-CAAGAAAGGTACCGCGCAGAAGTTTCTACAAGCTCCAGGGACAGGAACCGACC 357
Query 723 TAGGCTTCTTTTCACTGGATGATCTATCGAAACCATCACCAGAAGAGGTGTACCCACTTG 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TAGGCTTCTTTTCACTGGATGATCTATCGAAACCATCACCAGAAGAGGTGTACCCACTTG 417
Query 783 TAATATCAGCCGAGACAGTAATATCACCAAGCTCGGTTTCAGAGGAACCATTAGTTCATA 842
|||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 418 TAATATCAGCCGAGACAGTAATCTCACCAAGCTCGGTGTCAGATGAACCATTAGTTCATA 477
Query 843 AGCAGATCACTCAAGCG-GTTTTGGAGAAGACTAATGATGGATCTTTCAAAGTGAAAGTC 901
|||| || ||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 478 AGCAAATTACTCAAGCGTGTTT-GGAGAAGACTAATGATGGATCTTTCAAAGTGAAAGTC 536
Query 902 ATGAAACAGATTCTATGGATTGAAGGAGAACGATATGAACTACAAGAGTTGTATGGAATC 961
||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 537 ATGAAACAGATCCTATGGATTGAAGGAGATCGATATGAACTACGTGAGTTGTATGGAATC 596
Query 962 GATAATTCAATCACACAAGGTACTGCTGCATCGGGGTTAGAGGATACTGGTGGCAAAGAA 1021
|||||||||| ||||||||||| |||||| | ||| ||||||||||| |||| |||||||
Sbjct 597 GATAATTCAACCACACAAGGTAATGCTGCGTTGGGCTTAGAGGATACCGGTGACAAAGAA 656
Query 1022 TGTGTCATTTGCTTGACTGAACCTAAGGACACAGCCGTCATGCCTTGTAGACATTTGTGT 1081
|||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 657 TGTGTCATATGCTTGACTGAACCTAAGAACACAGCTGTCATGCCTTGTAGACATTTGTGT 716
Query 1082 TTGTGCAGTGATTGCGCAGAAGAACTGAGGTTTCAGACAAACAAATGTCCCATTTGTAGA 1141
||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 717 TTGTGCAGTGACTGCGCAAAAGAACTGAGGTTTCAGTCAAACAAATGTCCCATTTGTAGA 776
Query 1142 CAACCTATC-CATGAGCTTGTAAAGATTAAAGTGGAAAGTAGTGATGAACAACACTGAAA 1200
||||||||| | ||||||| || || | ||||||||||||||||||||||||||||||||
Sbjct 777 CAACCTATCGC-TGAGCTTTTAGAGCTAAAAGTGGAAAGTAGTGATGAACAACACTGAAA 835
Query 1201 AAGAGGTTTCTTCCCTTC 1218
||||||||||||||||||
Sbjct 836 AAGAGGTTTCTTCCCTTC 853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56754465050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5