BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19090.1
Length=2163
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488793 jgi|Araly1|488793|fgenesh2_kg.6__1927__AT5G19090.2 955 0.0
Ahg477915 jgi|Araly1|477915|fgenesh2_kg.3__616__AT3G06130.1 82.4 1e-14
> Ahg488793 jgi|Araly1|488793|fgenesh2_kg.6__1927__AT5G19090.2
Length=1689
Score = 955 bits (517), Expect = 0.0
Identities = 654/713 (92%), Gaps = 37/713 (5%)
Strand=Plus/Plus
Query 1461 GGCGGTGGTGGTGGAGGGGGAGGACCTCAGAGCATGAGTATGCCAATGGGCGGTGCAATG 1520
||||||||||||||||||| |||||||| | ||||||| | || || |||||
Sbjct 1004 GGCGGTGGTGGTGGAGGGGAAGGACCTCCGGGCATGAG--T----AT--GC----CAATG 1051
Query 1521 GGTGGTCCAATGGGAAGTCTACCACAAATGGGTGGTGGTCCCGGTCCAATGAGTAATAAT 1580
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 GGTGGTCCAATGGGTAGTCTACCACAAATGGGTGGTGGTCCCGGTCCAATGAGTAATAAT 1111
Query 1581 ATGCAGGCGGTTCAAGGATTACCCGCAATGGGTCCAGGAGGTGGTGGTGGCGGTGGCCCA 1640
|||||||| ||||| |||||||||||||||||| | ||| ||||||||||||||||||
Sbjct 1112 ATGCAGGCAGTTCAGGGATTACCCGCAATGGGT--A-CAGGCGGTGGTGGCGGTGGCCCA 1168
Query 1641 TCCGCAGAAGCACCACCAGGATATTTCCAAGGCCAAGTCTCCGGAAACGGCGGAGGCGGA 1700
||||||| ||||||||||||||||||||||||||||||| |||| || || |||||||||
Sbjct 1169 TCCGCAGGAGCACCACCAGGATATTTCCAAGGCCAAGTCCCCGGCAATGGGGGAGGCGGA 1228
Query 1701 CAAGACTCAATGCCGGGAAACCCCTACTTacaacagcagcaacag------caacaacaa 1754
|||||||||||||||| ||| |||||||||||||||||||||||| |||||||||
Sbjct 1229 CAAGACTCAATGCCGGCAAATCCCTACTTACAACAGCAGCAACAGCAACAACAACAACAA 1288
Query 1755 caacaaTACTTAGCGGCGGTTATGAACCAGCAACGATCCATGGGAAACGAACGGTTCCAG 1814
|||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct 1289 CAACAATACTTAGCGGCGGTTATGAACCAGCAACGAGCCATGGGCACCGAACGGTTCCAG 1348
Query 1815 CCGATGATGTACGCTAGACCACCGCCAGCTGTCAACTATATGCCACCACAACCGCAACCG 1874
||||||||||||||||||||||| ||||||||||||||||||||| | | | ||||||
Sbjct 1349 CCGATGATGTACGCTAGACCACCACCAGCTGTCAACTATATGCCA-C-C-A---CAACCG 1402
Query 1875 CACCAACAACATCCATACCCGTATCCATATCCGTATCCACCCCAGTATCCGCCTCACAAT 1934
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1403 CACCAACAACATCCATACCCGTATCCATATCCGTATCCACACCAGTATCCGCCTCACAAT 1462
Query 1935 GGTGACCAGTATTCTGATTACTTCAATGACGAGAACACATCAAGCTGCAATATTATGTGA 1994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1463 GGTGACCAGTATTCTGATTACTTCAATGACGAGAACACATCAAGCTGCAATATTATGTGA 1522
Query 1995 ACAACAACAACAAAACTTTCCATAGTTTGTGTCCGGTCTGTGATTATACATGGAAATG-t 2053
|||| || | |||||||||||||||||||| ||| ||||||||||||||||||||||| |
Sbjct 1523 ACAA-AA-A-CAAAACTTTCCATAGTTTGT-TCCTGTCTGTGATTATACATGGAAATGGT 1578
Query 2054 tttttttttCATAATTATTGGGGGTTCTTAGAATCCtt-ttttttC-C-TCCAACGGATC 2110
|||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||
Sbjct 1579 TTTTTTTTTCATAATTATTGGGGGTTCTTAGAATCCTTCTTTTTTCTCCTCCAACGGATC 1638
Query 2111 AAATCCTAAATTATATTAGGAtttttttttATAATTTGTGATAGTTCTTAAGT 2163
||||||||||||||||||||||||| ||||| | |||||||||||||||||||
Sbjct 1639 AAATCCTAAATTATATTAGGATTTTCTTTTA-A-TTTGTGATAGTTCTTAAGT 1689
Score = 795 bits (430), Expect = 0.0
Identities = 492/519 (95%), Gaps = 15/519 (3%)
Strand=Plus/Plus
Query 1 AGTAGCAACTTTGCATCATCATCGTCA--------tctctctctctctctctccctctcA 52
||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1 AGTAGCAACTTTGCATCATCATCATCATCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCA 60
Query 53 TTCTGAAATAGATGAAGTAGAGAAGTTAATGTTCACCAAACTTACTGTAAAGCCTGAAAC 112
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 TTCTGAAATAGATGAAGTAGAGAAGTTAATGTTCACCAAACTTACTGTAAAGTCTGAAAC 120
Query 113 TTTCTTCCTTCTTCTTCTTTGCTTCATTCAAATTAATCTTTCAAGAACCAGCGGAGTTGT 172
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 TTTCTTCCTTCTTCTTCTTTGCTTCATTCAAATTAATCTTTCAAGAACCAGAGGAGTTGT 180
Query 173 CTCAGATCTAGTGATAAAAGTGAG-ATAGATTTGAATTTCGTCACCAATTCAAGAAAAGA 231
|||||||||||||||| ||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 181 CTCAGATCTAGTGATATAAGTGAGGA-AGATTTGAATTTTGTCACCAATTCAAGAAAAGA 239
Query 232 TGAGTAAAGAAGAGTTTATGAAGATCCAGACTTGTGTTCTCAAAGTGAATATTCATTGTG 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TGAGTAAAGAAGAGTTTATGAAGATCCAGACTTGTGTTCTCAAAGTGAATATTCATTGTG 299
Query 292 ATGGTTGTAAGCAGAAAGTGAAGAAAATCTTGCAGAAAATTGAAGGTGTTTTCACGACAA 351
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATGGTTGTAAACAGAAAGTGAAGAAAATCTTGCAGAAAATTGAAGGTGTTTTCACGACAA 359
Query 352 AGATAGACGCAGAGCTAGGGAAAGTGACTGTATCTGGAAACGTCGACCCATCAGTTCTTA 411
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 360 AGATAGACGCAGAGCAAGGGAAAGTGACTGTATCTGGAAACGTAGACCCATCAGTTCTTA 419
Query 412 TCAAGAAGCTCTTGAAATCT-GGTAAACATGCCGAAATCTGGG-GAGCTCCCAAGGGAGG 469
||||||||||||||||| || ||||||||||||||||| |||| |||||| ||||||||
Sbjct 420 TCAAGAAGCTCTTGAAA-CTTGGTAAACATGCCGAAATTTGGGAGAGCTCA-AAGGGAGG 477
Query 470 ATCTAACAACAATCAGAACCAACCCAACTTGGCCAATCA 508
| ||||||||||||||||||||| ||||||||||||||
Sbjct 478 AAATAACAACAATCAGAACCAACC-AACTTGGCCAATCA 515
Score = 606 bits (328), Expect = 2e-172
Identities = 386/414 (93%), Gaps = 3/414 (1%)
Strand=Plus/Plus
Query 612 ggaggaggaggcggcggcggaggtggtggtggcggaCCACCGAAGATGGTTATTCCACAG 671
||||| || || || || || || ||||| || |||||||||||||||||| |||| |||
Sbjct 521 GGAGGCGGTGGTGGTGGTGGTGGAGGTGGCGGTGGACCACCGAAGATGGTTCTTCCGCAG 580
Query 672 TTAACACCACAACAGATGCAGCAGTTGAATCCTCAACAGCTTCAGCAGCTACAACAACTT 731
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 581 TTAACTCCACAACAGATGCAGCAATTGAATCCTCAGCAGCTTCAGCAGCTACAACAACTT 640
Query 732 CAGCAGATGAAAGGGTTTCAAGATCTGAAGCTTCCTCCTCAGTTAAAGGGTGGTCCAGGT 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 641 CAGCAGATGAAAGGGTTTCAAGATCTGAAGCTTCCTCCTCAGTTAAAGGGTGGTCCAGGT 700
Query 792 CCGGGACCTGGCTCTGTTCCTATGAACAAGAATCCTCAGATGCCTAATAATCCTAATCAG 851
|| |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||
Sbjct 701 CCTGGACCTGGCTCTGTTCCTATGAACAAGAATCCACAGCTACCTAATAATCCTAATCAG 760
Query 852 AAGGCTGTGAAGTTCAATGTTCC---tgatgatgatgatgaggaagattttagtgatgaa 908
||||||||||||||||||||||| |||||||||||| ||||| ||||| |||||||||
Sbjct 761 AAGGCTGTGAAGTTCAATGTTCCGGATGATGATGATGACGAGGACGATTTCAGTGATGAA 820
Query 909 ttcgatgatgagtttgatgaagatgacgacgagtttgatgatgatttggaagatgatgag 968
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 821 TTCGATGATGAGTTTGATGATGATGATGACGAGTTTGATGATGATTTGGAAGATGATGAG 880
Query 969 tttgacgacCACCCACCTCCGCCTAACAAAATGAAGCCTATGATGGGTGGTGGT 1022
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 881 TTTGACGACCACCCACCTCCGCCTAACAAGATGAAGCCTATGATGGGCGGTGGT 934
> Ahg477915 jgi|Araly1|477915|fgenesh2_kg.3__616__AT3G06130.1
Length=1738
Score = 82.4 bits (44), Expect = 1e-14
Identities = 48/50 (96%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 729 CTTCAGCAGATGAAAGGGTTTCAAGATCTGAAGCTTCCTCCTCAGTTAAA 778
|||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 714 CTTCAGAAGATGAAAGGGTTTCAAGATCTGAAGCTTCCTCCTCAGGTAAA 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81398853565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5