BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19100.1
Length=1176
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488794 jgi|Araly1|488794|fgenesh2_kg.6__1928__AT5G19100.1 728 0.0
> Ahg488794 jgi|Araly1|488794|fgenesh2_kg.6__1928__AT5G19100.1
Length=1098
Score = 728 bits (394), Expect = 0.0
Identities = 482/525 (92%), Gaps = 4/525 (1%)
Strand=Plus/Plus
Query 654 GATCTTTGCCTCCACGCCTCTGATCGGTAATGGCAAGTCCGGCGAGTACTTAATCGATGT 713
|||||||||||||||||||||||||| || || ||||||||| |||||||||||||||||
Sbjct 576 GATCTTTGCCTCCACGCCTCTGATCGCTAGTGACAAGTCCGGTGAGTACTTAATCGATGT 635
Query 714 GAAGTCCATCCAAATCGGTGCAAAGACCGTTCCTATAC-CCTATGGAGCCACAAAGATCA 772
|||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||
Sbjct 636 GAAGTCCATCCAAATCGGTGGAAAGACCGTTCCTATACTCC-ATGGAACCACAAAGATCA 694
Query 773 GCACTTTGGCTCCTTACACCGTATTCCAAACTTCCCTTTACAAGGCTCTGCTCACAGCTT 832
| ||||||||||||||||| || || ||||||||| | ||||||||||| |||||||| |
Sbjct 695 GTACTTTGGCTCCTTACACTGTGTTGCAAACTTCCATATACAAGGCTCTTCTCACAGCCT 754
Query 833 TCACCGAAAACATCAAGATAGCTAAAGCTCCCGCGGTGAAGCCTTTCGGTGCGTGCTTCT 892
|| ||| || | |||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 755 TCGCCGGAAGCGCCAAGATAGCTAAAGCTCCGGCCGTGAAGCCTTTCGGTGCGTGCTTCC 814
Query 893 ACTCCAATGGAGGACGTGGAGTTCCCGTGATCGACCTGGTGCTGAGCGGAGGGGCTAAGT 952
|||||||||||||||||| ||||| |||||||||||| || |||| |||||||||||||
Sbjct 815 GCTCCAATGGAGGACGTGGCGTTCCTGTGATCGACCTGTTGGTGAGGGGAGGGGCTAAGT 874
Query 953 GGAGGATCTACGGGTCTAATTCCTTGGTGAAGGTGAATAAAAATGTGGTTTGTTTAGGGT 1012
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 875 GGAGGATCTACGGGTCTAATTCGTTGGTGAAGGTGAATAAAAATGTGGTTTGTTTAGGGT 934
Query 1013 TTGTGGACGGAGGTGTGAAGCCGAAGTACCCTATAGTGATCGGAGGATTTCAGATGGAGG 1072
||||||||||||||||||| |||||| |||| ||||||||||||||| |||||||||| |
Sbjct 935 TTGTGGACGGAGGTGTGAATCCGAAGAACCCGATAGTGATCGGAGGACTTCAGATGGAAG 994
Query 1073 ATAATTTGGTGGAGTTCGATCTTGAAGCTTCCAAATTTTCTTTCTCCTCTTCTCTTTTGC 1132
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 995 ATAATTTGGTGGAGTTCGATCTCAAAGCTTCCAAATTTTCTTTCTCTTCTTCTCTTTTGC 1054
Query 1133 TTCACAACACTTCTTGCTCAGTG-CAAAGGTTGTCTCCTTTCTAA 1176
||||||||||||||||||||||| ||| |||| |||||||| |||
Sbjct 1055 TTCACAACACTTCTTGCTCAGTGGCAA-GGTTATCTCCTTTTTAA 1098
Score = 704 bits (381), Expect = 0.0
Identities = 465/505 (92%), Gaps = 7/505 (1%)
Strand=Plus/Plus
Query 1 ATGGCTCCTCGTGTGATCTTCTTACTTCTCTCGCTTGTTTTTCTCTACCTCGCAAACACA 60
||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||
Sbjct 1 ATGGCTCCTCGTGTGATCTTCTTACTTTTCTCACTTGTTTTCCTCTACCTCGCAAACACA 60
Query 61 TCACACTCTTT-GAGAAAGTTTCAATCATTTCTACACCCTATTTATAAAGACACGGCCAA 119
||||||||||| || |||||||||||| ||||||||||||||||||||||||| |||
Sbjct 61 TCACACTCTTTGGA-AAAGTTTCAATCCTTTCTACACCCTATTTATAAAGACAAATCCAC 119
Query 120 AAATATATACACCATCCCTTTGTCCATCGGCT-CA--ACTTCCAGCGAAAAATTCGTCCT 176
|||||| ||| | ||||||||||||||||||| || |||||||||||| ||||||||||
Sbjct 120 AAATATCTACTCGATCCCTTTGTCCATCGGCTCCACTACTTCCAGCGAAGAATTCGTCCT 179
Query 177 TGACCTCAACGGAGCCGCACCGTTATTGCAAAACTGT-CCAACCGCCGCCAAATCCACCA 235
|||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct 180 TGACCTCAACGGAGCCGCACCGTTATTGCAAAACTGCGCCA-CAGCCGCCAAATCCACCA 238
Query 236 CCTACCACCCAATCAGATGTGGCTCCACAAGATGCAAATACGCAAACCCCAACTTCCCCT 295
|||||||||| |||| ||| ||||||||||||||||| ||||||||||| |||||||| |
Sbjct 239 CCTACCACCCCATCAAATGCGGCTCCACAAGATGCAACTACGCAAACCCAAACTTCCCTT 298
Query 296 GTCCCAACAATGTCATTGCCAAGAAGAGGACCGTGTGTCTCTCCTCCGACAATTCCCGCC 355
|||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 299 GTCCCAACAATGTCATCACCAAGAAGAGGACCGTGTGTCGCTCCTCCGACAATGCCCGCC 358
Query 356 TATTCCGAGACACCGTCCCCTTGTTATACACATTTAATGGAGTTTACACTAGGGACAGTG 415
| ||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
Sbjct 359 TCTTCAGAGACACCGTCCCCTTGTTATACACATTTAATGGAGTATACACTATGGACAGCG 418
Query 416 AAATGAGTTCTTCATTGACTTTGACTTGCACTGACGGTGCTCCTGCCTTAAAACAAAGAA 475
||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 419 AAAAGAGTTCTTCATTGACTTTGACTTGCTCTGACGGTGCTCCTACCTTAAAACAAAGAA 478
Query 476 CCATCGGTCTCGCTAACACCCACTT 500
|| ||||||||||||||||||||||
Sbjct 479 CCGTCGGTCTCGCTAACACCCACTT 503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43879477467
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5