BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G19100.1 Length=1176 Score E Sequences producing significant alignments: (Bits) Value Ahg488794 jgi|Araly1|488794|fgenesh2_kg.6__1928__AT5G19100.1 728 0.0 > Ahg488794 jgi|Araly1|488794|fgenesh2_kg.6__1928__AT5G19100.1 Length=1098 Score = 728 bits (394), Expect = 0.0 Identities = 482/525 (92%), Gaps = 4/525 (1%) Strand=Plus/Plus Query 654 GATCTTTGCCTCCACGCCTCTGATCGGTAATGGCAAGTCCGGCGAGTACTTAATCGATGT 713 |||||||||||||||||||||||||| || || ||||||||| ||||||||||||||||| Sbjct 576 GATCTTTGCCTCCACGCCTCTGATCGCTAGTGACAAGTCCGGTGAGTACTTAATCGATGT 635 Query 714 GAAGTCCATCCAAATCGGTGCAAAGACCGTTCCTATAC-CCTATGGAGCCACAAAGATCA 772 |||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||| Sbjct 636 GAAGTCCATCCAAATCGGTGGAAAGACCGTTCCTATACTCC-ATGGAACCACAAAGATCA 694 Query 773 GCACTTTGGCTCCTTACACCGTATTCCAAACTTCCCTTTACAAGGCTCTGCTCACAGCTT 832 | ||||||||||||||||| || || ||||||||| | ||||||||||| |||||||| | Sbjct 695 GTACTTTGGCTCCTTACACTGTGTTGCAAACTTCCATATACAAGGCTCTTCTCACAGCCT 754 Query 833 TCACCGAAAACATCAAGATAGCTAAAGCTCCCGCGGTGAAGCCTTTCGGTGCGTGCTTCT 892 || ||| || | |||||||||||||||||| || |||||||||||||||||||||||| Sbjct 755 TCGCCGGAAGCGCCAAGATAGCTAAAGCTCCGGCCGTGAAGCCTTTCGGTGCGTGCTTCC 814 Query 893 ACTCCAATGGAGGACGTGGAGTTCCCGTGATCGACCTGGTGCTGAGCGGAGGGGCTAAGT 952 |||||||||||||||||| ||||| |||||||||||| || |||| ||||||||||||| Sbjct 815 GCTCCAATGGAGGACGTGGCGTTCCTGTGATCGACCTGTTGGTGAGGGGAGGGGCTAAGT 874 Query 953 GGAGGATCTACGGGTCTAATTCCTTGGTGAAGGTGAATAAAAATGTGGTTTGTTTAGGGT 1012 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 875 GGAGGATCTACGGGTCTAATTCGTTGGTGAAGGTGAATAAAAATGTGGTTTGTTTAGGGT 934 Query 1013 TTGTGGACGGAGGTGTGAAGCCGAAGTACCCTATAGTGATCGGAGGATTTCAGATGGAGG 1072 ||||||||||||||||||| |||||| |||| ||||||||||||||| |||||||||| | Sbjct 935 TTGTGGACGGAGGTGTGAATCCGAAGAACCCGATAGTGATCGGAGGACTTCAGATGGAAG 994 Query 1073 ATAATTTGGTGGAGTTCGATCTTGAAGCTTCCAAATTTTCTTTCTCCTCTTCTCTTTTGC 1132 |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 995 ATAATTTGGTGGAGTTCGATCTCAAAGCTTCCAAATTTTCTTTCTCTTCTTCTCTTTTGC 1054 Query 1133 TTCACAACACTTCTTGCTCAGTG-CAAAGGTTGTCTCCTTTCTAA 1176 ||||||||||||||||||||||| ||| |||| |||||||| ||| Sbjct 1055 TTCACAACACTTCTTGCTCAGTGGCAA-GGTTATCTCCTTTTTAA 1098 Score = 704 bits (381), Expect = 0.0 Identities = 465/505 (92%), Gaps = 7/505 (1%) Strand=Plus/Plus Query 1 ATGGCTCCTCGTGTGATCTTCTTACTTCTCTCGCTTGTTTTTCTCTACCTCGCAAACACA 60 ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||| Sbjct 1 ATGGCTCCTCGTGTGATCTTCTTACTTTTCTCACTTGTTTTCCTCTACCTCGCAAACACA 60 Query 61 TCACACTCTTT-GAGAAAGTTTCAATCATTTCTACACCCTATTTATAAAGACACGGCCAA 119 ||||||||||| || |||||||||||| ||||||||||||||||||||||||| ||| Sbjct 61 TCACACTCTTTGGA-AAAGTTTCAATCCTTTCTACACCCTATTTATAAAGACAAATCCAC 119 Query 120 AAATATATACACCATCCCTTTGTCCATCGGCT-CA--ACTTCCAGCGAAAAATTCGTCCT 176 |||||| ||| | ||||||||||||||||||| || |||||||||||| |||||||||| Sbjct 120 AAATATCTACTCGATCCCTTTGTCCATCGGCTCCACTACTTCCAGCGAAGAATTCGTCCT 179 Query 177 TGACCTCAACGGAGCCGCACCGTTATTGCAAAACTGT-CCAACCGCCGCCAAATCCACCA 235 |||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||| Sbjct 180 TGACCTCAACGGAGCCGCACCGTTATTGCAAAACTGCGCCA-CAGCCGCCAAATCCACCA 238 Query 236 CCTACCACCCAATCAGATGTGGCTCCACAAGATGCAAATACGCAAACCCCAACTTCCCCT 295 |||||||||| |||| ||| ||||||||||||||||| ||||||||||| |||||||| | Sbjct 239 CCTACCACCCCATCAAATGCGGCTCCACAAGATGCAACTACGCAAACCCAAACTTCCCTT 298 Query 296 GTCCCAACAATGTCATTGCCAAGAAGAGGACCGTGTGTCTCTCCTCCGACAATTCCCGCC 355 |||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| Sbjct 299 GTCCCAACAATGTCATCACCAAGAAGAGGACCGTGTGTCGCTCCTCCGACAATGCCCGCC 358 Query 356 TATTCCGAGACACCGTCCCCTTGTTATACACATTTAATGGAGTTTACACTAGGGACAGTG 415 | ||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||| | Sbjct 359 TCTTCAGAGACACCGTCCCCTTGTTATACACATTTAATGGAGTATACACTATGGACAGCG 418 Query 416 AAATGAGTTCTTCATTGACTTTGACTTGCACTGACGGTGCTCCTGCCTTAAAACAAAGAA 475 ||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 419 AAAAGAGTTCTTCATTGACTTTGACTTGCTCTGACGGTGCTCCTACCTTAAAACAAAGAA 478 Query 476 CCATCGGTCTCGCTAACACCCACTT 500 || |||||||||||||||||||||| Sbjct 479 CCGTCGGTCTCGCTAACACCCACTT 503 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 43879477467 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5