BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19110.1
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351013 jgi|Araly1|351013|fgenesh1_pg.C_scaffold_6001606 1679 0.0
> Ahg351013 jgi|Araly1|351013|fgenesh1_pg.C_scaffold_6001606
Length=1212
Score = 1679 bits (909), Expect = 0.0
Identities = 1122/1222 (92%), Gaps = 25/1222 (2%)
Strand=Plus/Plus
Query 8 GTAGCCTCACGCGCCTAC-TAGTCTTCCTTTCCATTTTCGCAGCCATAGCTCTG-AAATC 65
||||||||| |||||| | ||||||||||||||||||||||||||||| ||| | |||||
Sbjct 5 GTAGCCTCATGCGCCT-CATAGTCTTCCTTTCCATTTTCGCAGCCATAACTC-GAAAATC 62
Query 66 AAACTCTCAATACCTTCTTCCGATCACCAAGCACGAACCCACCAATCTA-TTCTACACCA 124
|||||||| |||||| |||| |||||||| |||||||||||||||| | ||||||||||
Sbjct 63 GAACTCTCAGTACCTTTTTCCAATCACCAAACACGAACCCACCAATC-AGTTCTACACCA 121
Query 125 CTTTCAACGTCGGATCCGCCG-CAAAATCTCCTGTAAACCTCCTCCTCGACCTCGGAACA 183
|||||||| | |||||| ||| |||||||||| |||||||| |||||||||||||||||
Sbjct 122 CTTTCAACATTGGATCC-CCGACAAAATCTCCCGTAAACCTACTCCTCGACCTCGGAACC 180
Query 184 AACCTCACGTGGCTCGACTGCCGCAAACTTAAATCTTTATCATCTCTCCGCCTAGTCACT 243
||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 181 AACCTCACGTGGCTCAACTGCCGCAAACTCAAATCTTTAACATCTCTCCGCCTAGTCACT 240
Query 244 TGCCAGAGCTCCACATGCAAGTCTATCCCCGGTAATGGATGCG-CTGGCAAATCTTGTCT 302
|||||||||||||| |||||||| |||||||||||||| |||| | || ||||| |||||
Sbjct 241 TGCCAGAGCTCCACCTGCAAGTCCATCCCCGGTAATGGCTGCGAC-GGAAAATCCTGTCT 299
Query 303 TTACAAGCAACCAAACCCACTCGGACAAAACCCCGTTGTAACCGGCCGTGTCGTCCAAGA 362
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 300 TTACAAGCAACCAAACCCTCTCGGTCAAAACCCCGTTGTAACAGGCCGTGTCGTCCAAGA 359
Query 363 CAGAGCTTCCCTCTACACCACAGACGGCGGCAAGTTCCTCTCTCAAGTCTCCGTCCGCCA 422
|||||||||| ||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 360 CAGAGCTTCCATCTCCACCACAGACGGCGGCAAGTTCCTCTCTCAAGTCTCAGTCCCCCG 419
Query 423 CTTCACATTCTCATGCGCCGGTGAGAAAGCCCTCCAAGGCCTTCCTCCTCCAGTCGACGG 482
|||||||||||| |||||||| |||||| ||||| |||||||||||| ||| |||| |||
Sbjct 420 CTTCACATTCTCCTGCGCCGGCGAGAAAACCCTCGAAGGCCTTCCTCGTCCTGTCGCCGG 479
Query 483 AGTTCTGGCTCTTTCTCCCGGATCTTCGTCGTTCACGAAACAAGTGACGTCAGCGTTTAA 542
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 AGTTCTGGCTCTTTCTCCTGGATCTTCGTCGTTCACGAAACAGGTGACGTCAGCGTTTAA 539
Query 543 CGTCATCCCTAAATTCTCTCTCTGCTTGCCTTCTTCCGGTACCGGTCATTTCTATATCGC 602
||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||||
Sbjct 540 CGTCATCCCTAAATTCTCTCTATGCTTGCCTTCTTCCGGTACCGGGCGTTTTTATATCGC 599
Query 603 CGGCATTCACTACTTTATCCCACCATTCAATAG-TAGCGA-TAATCCGATTCCAAGGACT 660
||||||||| ||||||||||| || |||||| | |||| | | | ||||||| | ||||
Sbjct 600 CGGCATTCATTACTTTATCCCGCCGTTCAAT-GATAGC-AGTTCTTCGATTCCGATGACT 657
Query 661 TTAACTCCCATTAAAGGCACTGACTCAGGAGATTATCTAATCACT-GT--AAAATCTATC 717
||||||||||||| |||||||||||||||||||||||||||| || || ||| ||||
Sbjct 658 TTAACTCCCATTAGAGGCACTGACTCAGGAGATTATCTAATC-CTAGTCCTAAA--TATC 714
Query 718 TACGTTGGTGGAACTGCTTTGAAGTTGAACCCTGATTTGCTAACCGGCGGAGCCAAACTC 777
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 715 TACGTTGGTGGAACTCCTTTGAAGTTGAACCCTGATTTGCTAAACGGCGGAGCCAAACTC 774
Query 778 AGTACGGTGGTTCACTACACCGTACTTCAAACCGATATCTACAATGCTCTTGCTCAGTCT 837
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 775 AGCACGGTGGTTCACTACACCGTACTTCAAACCGATATTTACAATGCTCTTGCTCAGTCT 834
Query 838 TTTACACTCAAGGCTAAGGCTATGGGAATAGCTAAGGTTCCATCGGTGGCGCCGTTTAAA 897
||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||| |||
Sbjct 835 TTTACACTCGAGGCAAAGACTATGGGAATATTTAAGGTTCCATCGGTGGCGCCGTTCAAA 894
Query 898 CATTGTTTTGATTCACGCACCGCTGGAAAGAATTTGACGGCGGGGCCTAACGTGCCCGTG 957
|||||||| ||| | ||||| ||||||||||| |||| ||||||| |||||||| |||
Sbjct 895 CATTGTTTCGATGCGCGCACGGCTGGAAAGAACTTGA---CGGGGCCGAACGTGCCGGTG 951
Query 958 ATAGAGATTGGTCTGCCGGGGAGGATAGGGGAGGTAAAGTGGGGGTTCTACGGTGCGAAT 1017
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 952 ATAGAGATTGGTCTGCCGGGGAGGATAGGGGAGTTGAAGTGGGGGTTCTACGGTGCGAAT 1011
Query 1018 ACGGTGGTGAAAGTGAAGGAAACGGTGATGTGTTTGGCGTTTATCGACGGTGGAAAGACA 1077
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1012 ACGGTGGTGAAAGTGAAGGAAACGGTGATGTGTTTGGCGTTTATCGACGGTGGAAAGA-A 1070
Query 1078 -CCGAAGGATTTGATGGTGATTGGGACACATCAGCTTCAAGATCATATGCTCGAGTTCGA 1136
||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1071 GCCGGAGAATTTGATGGTGATTGGGACGCATCAGCTTCAAGATCATATGCTCGAGTTCGA 1130
Query 1137 TTTCAGCGGGACGGTTCTCGCTTTTAGTGAGTCACTCTTGCTCCATAACACAAGCTGCTC 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TTTCAGCGGGACGGTTCTCGCTTTTAGTGAGTCACTCTTGCTCCATAACACAAGCTGCTC 1190
Query 1197 CACTTGGCCTTCCCAAAAATAG 1218
||||||| ||||| ||||||||
Sbjct 1191 CACTTGGACTTCCAAAAAATAG 1212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51542183784
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5