BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19120.1
Length=1420
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488795 jgi|Araly1|488795|fgenesh2_kg.6__1929__AT5G19120.1 1552 0.0
> Ahg488795 jgi|Araly1|488795|fgenesh2_kg.6__1929__AT5G19120.1
Length=1299
Score = 1552 bits (840), Expect = 0.0
Identities = 1119/1250 (90%), Gaps = 34/1250 (3%)
Strand=Plus/Plus
Query 1 CCAGCGTCGGCCCACCGCATCCCAAACCATAACGCTTAATCCTTAAAAACCGTCCAGATC 60
||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct 1 CCAGCGTCGGCCCACCGCATCCCAAACCATAACCCAAAAT-CTTAAAAACCGTCCAGATC 59
Query 61 CATTTCCTTCCTCTAA-A---AC-TCATCACACACA-ct-tctaatggcttcttcttctt 113
||| ||||||| | || | | |||||||||||| || | |||||| ||||||
Sbjct 60 CATCTCCTTCC-CCAACACTCTCATCATCACACACACCTGT-TAATGG------CTTCTT 111
Query 114 gtttgaatctcttcttcttctcttttctctccgctctaat-catttctaaatctcagatc 172
|| |||||||||||||||| || || ||||||||||| || |||||| ||||||||||||
Sbjct 112 GTCTGAATCTCTTCTTCTTGTCCTTCCTCTCCGCTCT-ATCCATTTCCAAATCTCAGATC 170
Query 173 tctGATTCCGTTAACGGGGTCGTTTTCCCTGTTGTTAAAGACCTTCCAACCGGTCAATAC 232
||||||||| | ||||| ||||||||| |||||||||||||||| |||||||||||||||
Sbjct 171 TCTGATTCCCTCAACGGAGTCGTTTTCTCTGTTGTTAAAGACCTACCAACCGGTCAATAC 230
Query 233 CTCGCACAGATTCGA-CTCGGTGACTCACCGGATCCAGTCAAGCTCGTAGTCGATCTGGC 291
|||| ||||||| | ||||||||||||||||| ||||| |||||||| |||||||| ||
Sbjct 231 ATCGCTCAGATTC-ATCTCGGTGACTCACCGGAGCCAGTTAAGCTCGTCGTCGATCTCGC 289
Query 292 CGGCTCAATTCTCTGGTTTGATTGTTCCTCAAGACATGTTTCCTCGTCAAGGAACCTAAT 351
|||||||||||| |||||||||||||||||||||||| | ||||| || ||||||||||
Sbjct 290 CGGCTCAATTCTATGGTTTGATTGTTCCTCAAGACATATATCCTCCTCTCGGAACCTAAT 349
Query 352 ATCCGGTAGCTCTAGCGGCTGCTTAAAGGCAAAAGTTGGAAATGAACGAGTatcatcatc 411
||| ||||||||||||||||| ||||||| |||||||| ||||| ||||||||||||||
Sbjct 350 CTCCTGTAGCTCTAGCGGCTGCCTAAAGGCTAAAGTTGGGAATGACCGAGTATCATCATC 409
Query 412 atcatcatcGCGTA-AAGACCAAAACGCCGATTGCGAATTACTTGTTAAAAACGACGCCT 470
||| | | | | | | |||||||||| ||||||||||| ||||| | ||||| ||||
Sbjct 410 ATC-GCGT-G-G-AGACCACCAAAACGCTGATTGCGAATTGCTTGTGAGAAACGGCGCCG 465
Query 471 TTGGGATTACGGCGAGAGGAGAGCTTTTCAGTGACGTCATGTCGGTTGGCTCTGTTACTT 530
||||||||| ||||||||| |||||| ||||||||||||||| | | | || | |
Sbjct 466 TTGGGATTATGGCGAGAGGGGAGCTTAACAGTGACGTCATGTC-G-T---T-TG-GA--T 516
Query 531 CTCCGGGAACCGTTGATCTACTTTTCGCTTGTACTCCACCGTGGCTGTTACGTGGGCTCG 590
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 517 CTCCGGGAACCGTTGATCTGCTTTTCGCTTGTACTCCACCGTGGCTGTTACGTGGGCTCG 576
Query 591 CTAGTGGAGCCCAAGGAGTAATGGGCTTAGGAAGGGCCCAAATCTCACTCCCTTCACAAC 650
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 577 CTAGTGGAGCCCAAGGAGTAATGGGCTTAGGAAGGGCCCAAATCTCTCTTCCTTCACAAC 636
Query 651 TCGCCGCGGAAACTAACGAACGTCGTCGGTTAACTGTTTACCTGTCGCCGTTGAACGGTG 710
|||||||||||||||| ||||| ||||| |||||||||| |||||||||||| ||||| |
Sbjct 637 TCGCCGCGGAAACTAATGAACGCCGTCGTTTAACTGTTTTCCTGTCGCCGTTAAACGGCG 696
Query 711 TCGTATCAACGAGTTCGGTGGAGGAGGTTTTTGGAGTGGCTGCGTCTAGATCGCTGGTTT 770
|||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 697 TCGTGTCGACGAGTTCGGTTGAGGAGGTTTTTGGAGTGGCTGCGTCTAGATCGCTGGTTT 756
Query 771 ACACGCCTTTGTTAACCGGTTCGAGTGGCAACTACGTAATTAACGTGAAATCGATTAGAG 830
|||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 757 ACACGCCTCTGTTAACCGATTCGAGTGGCAATTACGTAATTAACGTGAAATCGATTAGAG 816
Query 831 TCAACGGGGAAAAGCTCTCCGTGGAAGGTCCGTTGGCGGTGGAGCTGAGCACGGTGGTTC 890
|||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 817 TCAACGGGAAAAAACTCTCCGTGGAAGGTCCGTTGGCGGCGGAGCTGAGCACGGTGGTTC 876
Query 891 CTTACACGATTTTAGAGAGCTCGATCTACAAGGTGTTCGCGGAAGCTTACGCCAAAGCTG 950
|||| ||||| ||||||||||||||||| ||| || |||||||||||||| |||||||
Sbjct 877 CTTATACGATGCTAGAGAGCTCGATCTACGCGGTATTTGCGGAAGCTTACGCTAAAGCTG 936
Query 951 CGGGTGAAGCTACATCGGTGCCTCCTGTCGCACCGTTTGGGCTCTGCTTCACTAGTGACG 1010
|| ||||||||||||||||| |||| || |||||||| |||||||| ||||| |||||||
Sbjct 937 CGAGTGAAGCTACATCGGTGGCTCCCGTAGCACCGTTCGGGCTCTGTTTCACGAGTGACG 996
Query 1011 TAGATTTTCCGGCGGTAGATCTAGCGTTGCAGAGTGAGATGGTGCGGTGGAGGATTCATG 1070
|||| ||||||||||| ||||| ||||||||||||||||||||| |||||||||| || |
Sbjct 997 TAGAGTTTCCGGCGGTGGATCTGGCGTTGCAGAGTGAGATGGTGAGGTGGAGGATCCAGG 1056
Query 1071 GGAAGAATCTGATGGTGGATGTTGGTGGTGGAGTCCGATGCTCGGGGATTGTTGACGGCG 1130
|||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1057 GGAAGAATCTAATGGTGGATGTTGGTGGTGGAGTCCGATGCTTGGGAATTGTTGACGGCG 1116
Query 1131 GGTCAAGTCGAGTCAACCCGATTGTAATGGGTGGGCTACAATTAGAAGGCTTTATATTGG 1190
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1117 GGTCGAGTCGGGTCAACCCGATTGTAATGGGTGGGCTACAATTAGAAGGCTTGATATTGG 1176
Query 1191 ACTTTGATTTGGGTAACTCAATGATGGGCTTTGGACAAAGAACACGCTCT 1240
| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1177 ATTTTGATTTGGGTAACTCAATGATGGGCTTTGGGCAAAGAACACGTTCT 1226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53097801530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5