BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19130.1
Length=2350
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488797 jgi|Araly1|488797|fgenesh2_kg.6__1931__AT5G19130.1 3579 0.0
> Ahg488797 jgi|Araly1|488797|fgenesh2_kg.6__1931__AT5G19130.1
Length=2343
Score = 3579 bits (1938), Expect = 0.0
Identities = 2223/2358 (94%), Gaps = 29/2358 (1%)
Strand=Plus/Plus
Query 4 GGTTCGAATCTGCCGAAATTGATCGAAGATCTGTGAATCATGGCAGCGGTGAACCGGGAT 63
||||||||||| ||||||||||||| ||||||||| |||||||| |||||||| |||||
Sbjct 1 GGTTCGAATCTCCCGAAATTGATCGGAGATCTGTGGATCATGGCGGCGGTGAAACGGGAA 60
Query 64 AATGAAGAGGAAGTGAAGACCGATGATGGATCTCCTAAAATCAAACCGAGACCAATCGTT 123
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AATGAAGAGGAGGTGAAGACCGATGATGGATCTCCTAAAATCAAACCGAGACCAATCGTT 120
Query 124 CGGCTCGGAATCTTCCTCATCGCTCACAGTCCTGTTTTCAGTGTGGTTTTCTCTGCTGCT 183
||||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 121 CGGCTAGGAATCTTTCTCATCGCTCACAGTCCCATCTTCAGTGTGGTTTTCTCTGCTGCT 180
Query 184 GGGGTTTTGGCGCTGCTGCTTTTGCCTCTACTGGCAAAGAACACTTACATCTCCGAGAAT 243
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GGGGTTTTGGCGCTGCTGCTTTTGCCGCTACTGGCAAAGAACACTTACATCTCCGAGAAT 240
Query 244 GCTCTAATGCCAGGCTCTGCACGGTCTATGCTCTCTAATCGA-GATGTTTCTGATGGAAG 302
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 241 GCTCTAATGCCAGGCTCTGCACGGTCTATGCTCTCTAATC-AGGATGTTTCTGATGGAAG 299
Query 303 CAAACTGGTGAAGGACATAAAGAACTTTAGGTTGAATCATGAAGGCCAGGGTGTTGAAGT 362
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 300 CAAACTGGTGAAAGACATAAAGAATTTTAGGTTGAATCATGAAGGCCAGGGTGTCGAAGT 359
Query 363 CCAAAAGCTCATTGGAAAATACATGTCAGATATGGGTGCAGAAGTTTCTTATCAAAAGTT 422
||| ||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 CCAGAAGCTTATTGGAACATACATGTCAGAAATGGGTGCAGAAGTTTCTTATCAAAAGTT 419
Query 423 CCATCCTGAAGGGAATCAATTTCACCCCCTGCACTTTTTCTCCGGTCCAGATTCATATAC 482
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 420 CCATCCTGAAGGGAATCAATTTCACCCTCTGCACTTTTTCTCCGGTCCTGATTCATATAC 479
Query 483 ATTGCTGGAGAATGTCAGTTGTGCTTCTTATGGGGTCAATGTTGCGGGGATTATAAGAGC 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATTGCTGGAGAATGTCAGTTGTGCTTCTTATGGGGTCAATGTTGCGGGGATTATAAGAGC 539
Query 543 CCCTCGTGGTGATGGAAAAGAGTCTATTGTGCTGGTTACTCCCTATGATTTTATAAATGG 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CCCTCGTGGTGATGGAAAAGAGTCTATTGTGCTGGTTACTCCCTATGATTTTATAAATGG 599
Query 603 TGGAGACTATGAG-GATTTGTCTTTAGGAATTGTCAGTTCTCTTTTTTCCTTGCTCTCTA 661
|||||| |||||| | ||||||||||||||||||||| || |||||||||||||||||||
Sbjct 600 TGGAGATTATGAGAG-TTTGTCTTTAGGAATTGTCAGCTCACTTTTTTCCTTGCTCTCTA 658
Query 662 GAGTTACCTGGCTTTCCAAAGACATAATATGGCTTGTCGCTGATTCTCGTTATGGAGACT 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GAGTTACCTGGCTTTCCAAAGACATAATATGGCTTGTCGCTGATTCTCGTTATGGAGACT 718
Query 722 ATAGGCCTGTTGCTGCGTGGTTAACTGAATACCACTCACCTTCATTTAAGGTCTCGGATC 781
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 719 ATAGGCCTGTTGCTGCGTGGTTAACTGAATACCACTCACCTTCATTCAAGGTCTCGGATC 778
Query 782 TTCTGAAGTGTGACGAGCAAAATACAGCTGATAACTTCAGACGAGCTGGAACAATGGCTG 841
||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 779 TTCTGAAGTGTAACGAGCTAAATACAGCTGATAACTTCAGACGAGCTGGAACAGTGGCTG 838
Query 842 CTGCTTTGGTTTTGAAGGTTGATGGTAGAAGTGAAAAGTTTGAGGACACACTAAGTATCT 901
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 839 CTGCTTTGGTTTTGAAGGTTGATGGTAGAAGTGACAGGTTTGAGGACACACTAAGTATCT 898
Query 902 ATGCAGAGGCATCTAATGGGCAGATGCCAAATCTCGACCTCATCAATGTTGTAAATTACT 961
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 899 ATGCAGAGGCATCTAATGGGCAGATGCCAAATCTCGATCTCATCAATGTTGTAAATTACT 958
Query 962 TAGCGGTGCACAGGCAGGGGTTTTATGTCAAGGTTGAGAAGGTTGTATCTTTACTTTCCT 1021
||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 959 TAGCGGTCCACAGGCAGGGTTTTTATGTCAAGGTGGAGAAGGTTGTATCTTTACTTTCCT 1018
Query 1022 CTAGTTGGCTAAAGATTTTTGGGGAAATATTTGAAGCTGTTGGGAAATTGGCGCATATGT 1081
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1019 CTAGTTGGCTAAAGTTTTTTGGGGAAATATTTGAAGCTGTTGGGAAATTGGGGCATACGT 1078
Query 1082 TAAATCCGGACTGGAATTTTGGTATCCCAGCTGCAGACTATCTTGAAGGCAGTGCTACCC 1141
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1079 TAAATCCGGACTGGAATTTTGGTATCCCAGCCGCAGACTATCTTGAAGGCAGTGCTACCC 1138
Query 1142 TTGCAAGTTCACTGTACTCCCAGGCCCTTGGTATCCCAACTGGTCCCCATGGAGCTTTCC 1201
|||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1139 TTGCAAGTTCCCTGTACTCCCAGGCCCTTGGTATACCAACTGGTCCTCATGGAGCTTTCC 1198
Query 1202 GCGATTATCAAGTTGATGCTATAACTTTGAAAGTTTCACCTAGATTTCCTCCTGACAGTA 1261
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1199 GCGATTATCAAGTTGATGCAATTACTTTGAAAGTTTCACCTAGATTTCCTCCTGACAGTA 1258
Query 1262 AGACAAGACAACACGATTTCTTTCTACGAGGTGCCCGGTTACTGGAAGGAACTATAAGAT 1321
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AGACAAGACAACACGAATTCTTTCTACGAGGTGCCCGGTTACTGGAAGGAACTATAAGAT 1318
Query 1322 CAGTGAACAACCTCCTTGAGAAGTTCCATCAATCGTTTTTCCTTTACATGTTAACTTCGC 1381
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1319 CAGTGAACAACCTCCTCGAGAAGTTCCATCAATCGTTTTTCCTTTACCTGTTAACTTCGC 1378
Query 1382 CAAGCAAATTTATCTCTGTAGGAGTCTACATGATTGCCTTTGCTCTTCTTGTTGCCCCTC 1441
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1379 CAAGCAAATTTATCTCTGTAGGAGTCTACATGATTGCCTTTGCTCTTCTTGTAGCCCCTC 1438
Query 1442 TTCCAATGGTCGCAGCCTCTTTATACATCGATGGCTGTAAATCTCTTACCAATTCCACTC 1501
|||||||||||||||||||||||||||| || || |||||| ||||||||||||||||||
Sbjct 1439 TTCCAATGGTCGCAGCCTCTTTATACATTGACGGATGTAAAGCTCTTACCAATTCCACTC 1498
Query 1502 ATAACCCAACCGAAAACTTCAAGTCTTGGAAATGGCTAGATGCAGCGAAACAGGTCTTTA 1561
||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1499 ATAACCCTGCCGAAAACTTCAAGTCCTGGAAATGGCTAGATGCAGCCAAACAGGTCTTTG 1558
Query 1562 CTTTGCACTTGTTGGGTTTCATTGTCACGCTGCTACCTTATTTCATCTGTCAAGTACCGG 1621
|||||||||||||||||||||| ||||| ||||| |||||||| ||||||||| ||||||
Sbjct 1559 CTTTGCACTTGTTGGGTTTCATCGTCACACTGCTTCCTTATTTTATCTGTCAACTACCGG 1618
Query 1622 GCCAACATTCTCCAACAAACCGCTCCATCATGTGGGGCACTACCTCTTCGTCGCTTCTCC 1681
||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1619 GCCAACATTCTCCAAGAAACCGCTCCATTATGTGGGGTACTACCTCTTCGTCGCTTCTCC 1678
Query 1682 TTATAACCTTTGTCACAATGCCTGGTTGCTCTCCGTTCTCCTCTCGACTCCATGGAACCA 1741
||||||||||||||||||| || |||||||||||||||||||||||||||||| ||| ||
Sbjct 1679 TTATAACCTTTGTCACAATCCCGGGTTGCTCTCCGTTCTCCTCTCGACTCCATCGAAACA 1738
Query 1742 ACTGGGCCATCTTGAAATCAGTGACCATCTCAGCTGCCTTCATCGGCCTATGCCTCATGT 1801
||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1739 ACTGGGCTGTCTTGAAATCAGTGACCATCGCAGCTGCCTTCATCGGTCTATGCCTCATGT 1798
Query 1802 CCATAATCAATTTTGCCACCGCAGAGATTGGAGCGTTGCTACTAGTGCCAACGTGTCTTA 1861
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1799 CCATAATCAATTTCGCCACCGCAGAGATTGGAGCATTGCTACTAGTGCCAACGTGTCTAA 1858
Query 1862 TGGCTCAGCCTATAAAACCCGCTTTGAGATCCAGACGCCTTAAGAGCCTGTTGGGTGCGT 1921
||||||||||||||||||| ||| ||||||||||| || ||||||||||||||||||||
Sbjct 1859 TGGCTCAGCCTATAAAACCAGCTCTGAGATCCAGAAGCATTAAGAGCCTGTTGGGTGCGC 1918
Query 1922 TTTGCAGTATTG-TATTGCTGACAATCGGGTTCCCGGTCATGTTTTTTGCAATCTCTAAA 1980
||||||| ||| | ||| |||| ||||||||||||||||||||||| |||||||| |||
Sbjct 1919 TTTGCAGC-TTGGTGTTGGTGACCATCGGGTTCCCGGTCATGTTTTTCGCAATCTCAAAA 1977
Query 1981 GGGTTGCTTGGAGAAGGCCTCGTAGGGTTGAGTCTTGGAGGAGAGTTTTGGACATGGTTA 2040
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1978 GGGTTGCTTGGAGAAGGGCTCGTAGGTTTGAGTCTTGGAGGAGAGTTTTGGACATGGTTA 2037
Query 2041 GAGTCGCTTTGGGCGTGGAAGAGTGCAACATATCTATACATAGGTATGGTTCATCTTCCT 2100
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 2038 GAGTCGCTTTGGGCGTGGAAGAGTGCGACATATCTATACATAGGTATGATTCATCTTCCT 2097
Query 2101 TGCTGGCTCCTTTGCCTCTGCATCTTGTTTCATCCTTCTTAATTCTTATTTTACGTCCCA 2160
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 2098 TGCTGGCTCCTTTGCCTCTGTATCTTGTTTCATCCTTCTTAATTCTTATTTTACGCCCCA 2157
Query 2161 ATCTCCATACAAGGAAGGTCACAGTT-ATTTCCTTTACTTCGGTGACAGTTGTCCACACT 2219
||| |||||||| | | | || || |||||||||||||||| || ||||||||||| |
Sbjct 2158 ATCCCCATACAA--A-GTT-ACTTTTTATTTCCTTTACTTCGGCGAAAGTTGTCCACAGT 2213
Query 2220 -------TGTTGGAATTTGTCATATGTTCTAGTTGTCGCATGGTAATTAGCAGTTAGAGG 2272
| ||| |||||||||| | |||||||||||||||||||||||||| |||||||
Sbjct 2214 CCAACACTCTTGAAATTTGTCATGTTTTCTAGTTGTCGCATGGTAATTAGCAATTAGAGG 2273
Query 2273 TCTGATGTATCGTTAGAAAACTA-AAAA-TGCG-ATGAATGAGTGAAGTTTCTGTTTTTT 2329
|||||||||||||||||||||| |||| | || ||||||||||||||||| | |
Sbjct 2274 TCTGATGTATCGTTAGAAAACTTTAAAAGT-CGTATGAATGAGTGAAGTTT-T-T----- 2325
Query 2330 GTATTGATTTTTAGTTTT 2347
||||||||||||||||||
Sbjct 2326 GTATTGATTTTTAGTTTT 2343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88521729380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5