BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19150.1
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941455 jgi|Araly1|941455|scaffold_601999.1 1823 0.0
> Ahg941455 jgi|Araly1|941455|scaffold_601999.1
Length=1170
Score = 1823 bits (987), Expect = 0.0
Identities = 1111/1168 (95%), Gaps = 19/1168 (2%)
Strand=Plus/Plus
Query 49 CTCAACGAGAGAATCTGATGTTGGTGAAGCCCAG-TATCATCTCTGGCTTGGTACGATTG 107
|||||| |||||||||||||||||||||| || | ||||||||||| ||| |||||||
Sbjct 6 CTCAAC--GAGAATCTGATGTTGGTGAAGCATAGCT-TCATCTCTGGCCTGGGACGATTG 62
Query 108 ACTTCTCATTCACCTTCTTCTTCTTCAAGTGTGCTCAGAAGGCAAGAGTTCTTGGTACGA 167
|||||||| ||| |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 63 ACTTCTCACTCAACTTCTTCTTCTTCAAGTGTGATCAGAAGGCAACAGTTCTTGGTACGA 122
Query 168 ACGCTTTGTGGG--------TCA-----CCAA--TCATCAGAGCAATGAGTTCCACATCA 212
|||||||||||| ||| |||| ||||||||||||||||||| ||||||
Sbjct 123 ACGCTTTGTGGGTCACAAATTCATCGCCCCAAGCTCATCAGAGCAATGAGTTCAACATCA 182
Query 213 GAGGCCGACGCTGAGAGTGTTCTTAGAACCGTGACGCCATCGCTCGATCTCAAACGACAC 272
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 183 GAGGCCGACGCTGAGAGTGTCCTTAGAACCGTGACGCCATCGCTTGATCTCAAACGACAC 242
Query 273 AAAGGCCAAGCTGGGAAGATAGCTGTGATTGGAGGATGTCGTGAATACACAGGAGCTCCA 332
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 243 AAAGGCCAAGCTGGGAAGATAGCTGTGATTGGAGGATGTCGTGAATACACTGGAGCTCCA 302
Query 333 TACTTCGCTGCCATTTCAGCTTTGAAAATCGGTGCTGATTTGTCTCATGTATTCTGCACG 392
|||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 303 TACTTCGCCGCCATTTCAGCTTTGAAAATCGGTGCTGATTTATCTCATGTCTTCTGCACG 362
Query 393 AAAGATGCAGCTCCTGTTATAAAGAGCTATAGTCCTGAGCTTATAGTTCACCCTGTTCTT 452
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 AAAGACGCAGCTCCTGTTATAAAGAGCTATAGTCCTGAGCTTATAGTTCACCCTGTTCTT 422
Query 453 GAGGAATCATATAGCATCAGTCAACTCAGTGAAGAAGATAAAAGAGAAGTTCAAGATAAA 512
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 423 GAGGAATCATATAGCATCAGTCAACTCAGTGAAGAAGATCAAAGAAAAGTTCAAGATAAA 482
Query 513 GTGCTTGGAGAAGTCGGTAAATGGATGGAAAGATTTGATTGTCTTGTTATTGGTCCTGGT 572
||||| || ||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 483 GTGCTCGGGGAAGTCGATAAATGGATGGAAAGATTTGATTGCCTTGTTATTGGTCCTGGT 542
Query 573 TTGGGAAGAGATCCATTTCTCCTGGAATGTGTGAGTATTATCATGCTTCTTGCCAAAAAG 632
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 543 TTGGGAAGAGATCCATTTCTCCTGGAATGTGTGAGTAAAATCATGCTACTTGCCAAAAAG 602
Query 633 TCCAATGTTCCTTTTGTTATAGATGGGGACGGGCTGTTTCTTGTAACAAATTCCATTGAT 692
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 TTCAATGTTCCTTTTGTTATAGATGGGGACGGGCTGTTTCTTGTAACAAATTCCATTGAT 662
Query 693 CTTGTCCACAGCTATCCGCTTGCTGTCTTAACCCCAAATGTGAATGAGTATAAGCGCCTG 752
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 663 CTTGTCCACAGCTATCCGCTTGCTGTCTTAACCCCAAATGTGAACGAGTATAAGCGCCTG 722
Query 753 GTTCAAAAAGTACTGAATTGTGAAGTAGATGAACAAAATGCTGAAGATCAGTTACGTTCT 812
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 GTTCAGAAAGTGCTGAATTGTGAAGTAGATGAACAAAATGCTGAAGATCAGTTACGTTCT 782
Query 813 TTGGCCAAACAGATTGGTGGTGTCACGATTCTCAGGAAAGGGAAATCTGATCTTATAAGC 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TTGGCCAAACAGATTGGTGGTGTCACGATTCTCAGGAAAGGGAAATCTGATCTTATAAGC 842
Query 873 AATGGGGAGACAGTAAAATCAGTAAGCATATATGGTTCACCAAGGCGCTGTGGTGGACAA 932
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 843 AATGGGAAGACAGTAAAATCAGTAAGCATATATGGTTCACCAAGGCGCTGCGGTGGACAA 902
Query 933 GGCGATATTCTCTCTGGAGGTGTTGCAGTGTTTTTGTCATGGGCACAACAGCTTAAATCC 992
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 903 GGCGATATTCTCTCTGGGGGTGTTGCAGTGTTTTTGTCATGGGCACGACAGCTTAAATCG 962
Query 993 GATCCTGAAAGTCCCTCTGAGAATCCAGCTATCTTGGGATGCATAGCTGCATCTGGCCTT 1052
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GATCCTGAGAGTCCCTCTGAGAATCCAGCTATCTTGGGATGCATAGCTGCATCTGGCCTG 1022
Query 1053 CTCAGAAAGGCTGCATCTCTGGCCTTTACAAAACATAAGAGATCAACTCTCACAAGCGAC 1112
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 CTGAGAAAGGCTGCATCTCTGGCCTTTACAAAACATAAGAGATCAACTCTCACAAGCGAC 1082
Query 1113 ATTATCGAATGTTTAGGGGAGAGTTTGGAGGATATCTGCCCTGCATCTTAATCTCAGAAC 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 ATTATCGAATGTTTAGGGGAGAGTTTGGAGGATATCTGCCCTGCATCTTAATCTCAGAAC 1142
Query 1173 ACATGAAGTAGAGTTGTCTTGCCTTCTA 1200
|||||||||||||||||||||||| |||
Sbjct 1143 ACATGAAGTAGAGTTGTCTTGCCTACTA 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51351569199
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5