BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G19151.1

Length=392
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488800 jgi|Araly1|488800|fgenesh2_kg.6__1934__AT5G19151.1         455    1e-127


> Ahg488800 jgi|Araly1|488800|fgenesh2_kg.6__1934__AT5G19151.1
Length=333

 Score =  455 bits (246),  Expect = 1e-127
 Identities = 254/258 (98%), Gaps = 0/258 (0%)
 Strand=Plus/Plus

Query  30   AGAGAGGAAGAAGATGAAGCGGACGGTGATGGACAACGCGATTCGATCATCGGTGGTGGT  89
            ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct  1    AGAGAGGAAGAAGATGAAGAGGACGGTGATGGACAACGTGATTCGATCATCGGTGGTGGT  60

Query  90   GTTGGGATCATTGGCCTTTGGTTACTTGTCACTGGAGCTTGGTTACAAGCCTTTCCTTGA  149
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  61   GTTGGGATCATTGGCCTTTGGTTACTTGTCACTGGAACTTGGTTACAAGCCTTTCCTTGA  120

Query  150  AAAGGCTGAACAATACGAAAGATCTCTTCAGTCTTCTCAACAACATCAACAACAAGATGA  209
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  121  AAAGGCTGAACAATACGAAAGATCTCTTCAATCTTCTCAACAACATCAACAACAAGATGA  180

Query  210  ACAAGAAGAAGCGAGGTGGGACAATAGCAATGTCGAGGGGTGGGAGGAGAAAAGGTAGTC  269
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  ACAAGAAGAAGCGAGGTGGGACAATAGCAATGTCGAGGGGTGGGAGGAGAAAAGGTAGTC  240

Query  270  TTATAATCGGTTTCAATA  287
            ||||||||||||||||||
Sbjct  241  TTATAATCGGTTTCAATA  258


 Score =  119 bits (64),  Expect = 2e-26
 Identities = 72/76 (95%), Gaps = 0/76 (0%)
 Strand=Plus/Plus

Query  312  AGAAGAACCTTATCAAAATTTTCTTCTTAATCAACCGTAAGTTCAATCTGTTAACTATCA  371
            |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| 
Sbjct  258  AGAAGAACCTTATCAAAATTTTCTTCTTAATCAACCTTAAGATCAATCTGTTAACTATCC  317

Query  372  ACCATGGCCTGTTTTT  387
            ||||||||| ||||||
Sbjct  318  ACCATGGCCCGTTTTT  333



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14041256752


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5