BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19160.1
Length=1906
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351018 jgi|Araly1|351018|fgenesh1_pg.C_scaffold_6001611 2272 0.0
Ahg482040 jgi|Araly1|482040|fgenesh2_kg.4__1100__AT2G31110.2 65.8 1e-09
> Ahg351018 jgi|Araly1|351018|fgenesh1_pg.C_scaffold_6001611
Length=1395
Score = 2272 bits (1230), Expect = 0.0
Identities = 1342/1397 (96%), Gaps = 4/1397 (0%)
Strand=Plus/Plus
Query 240 ATGTCGAAGAACCCATCTCAGGAAGAAGATGAAGCCATGCCAATCTCTGAAGTAGTAATA 299
|||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||
Sbjct 1 ATGTCGAAGAACCCATCTCAAGAAGACGACGAAGCCATGCCAATCTCCGAAGTAGTAATA 60
Query 300 AAGAGATTCAAGCGTTTAAGGCTCGTGTTCGAGCCATCACTAGGAGTCTTGGGTTTTTTC 359
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 61 AAGAGATTCAAGCGTTTAAGGCTCGTATTCGAGCCGTCACTAGGAGTCTTGGGTTTTTTC 120
Query 360 TTGGTGGGTTTGTGTTTAGTCTTCAGCTTCTTCTACCTCGATTACAGAACCGTGGCTAAA 419
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 121 TTGGTGGGTTTGTGTTTAGTCTTCAGCTTCTTCTATCTCGATTACAGAACCGTCGCTAAA 180
Query 420 ACTAAAAGTCATGACTTTTCGGATCAATCGGAGAGATTCCTTTGGCTCAAGGAGCTCGAT 479
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 181 ACTAAAAGTCATGACTTTTCGGATCAATCGGAGAGATTTCTTTGGCTTAAGGAGCTTGAT 240
Query 480 GGGTTTGAAGTTAACAACACCAAAGTTGGGTTTCTTGAAGAGAGTGGGAATGGTTGTGAT 539
||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 GGGTTTGTAGATAACAACACCAAAGTTGGGTTTCTTGAAGAGAGTGGGAATAGTTGTGAT 300
Query 540 TTGTTCAATGGGAAATGGGTTTGGGACGAATCGTATCCCTTGTATCAGTCTAAAGATTGT 599
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 301 TTGTTCGATGGGAAATGGGTTTGGGACGAATCGTATCCGTTGTATCAGTCTAAAGATTGC 360
Query 600 ACCTTTATTGATGAAGGATTCAGATGCACTGAGTTTGGGAGACCTGATTTGTTCTATACT 659
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 ACCTTTCTTGATGAAGGATTCAGATGCACTGAGTTTGGGAGACTTGATTTGTTCTATACT 420
Query 660 AAGTGGAGATGGCAACCTAACCATTGTGATTTGCCCAGATTTGATGCTAAGTTGATGTTG 719
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 421 AAGTGGAGATGGCAACCTAACCATTGTGATTTGCCCAGATTTGATGCCAAGTTGATGCTG 480
Query 720 GAGAAGCTAAGGAACAAGCGGCTAGTGTTTGTAGGAGACTCAATTGGAAGAAACCAATGG 779
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 481 GAGAAGCTAAGGAACAAGCGGCTGGTATTTGTAGGAGACTCAATTGGAAGAAACCAATGG 540
Query 780 GAGTCTCTTCTTTGTATGCTAGCTTCTGCAATCAGTAACAAGAATTTGGTTTATGAAGTG 839
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 GAGTCTCTTCTTTGTATGCTAGCTTCTGCAATCAGGAACAAGAATTTGGTTTATGAAGTG 600
Query 840 AACAATAGACCCATCACAAAGCACATGGGCTTCTTTGTGTTCAGGTTTCATGACTACAAT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AACAATAGACCCATCACAAAGCACATGGGCTTCTTTGTGTTCAGGTTTCATGACTACAAT 660
Query 900 TGCACTGTTGAATACTATAGAGCACCGTTTTTGGTTCTTCAAAGCCGGCCACCTGA-AGG 958
|||||||||||||||||||||||||||||||||||||| |||||||| |||||| | ||
Sbjct 661 TGCACTGTTGAATACTATAGAGCACCGTTTTTGGTTCTCCAAAGCCGTCCACCT-AGTGG 719
Query 959 ATCACCAGAGAAGGTAAAGACCACTCTTAAGCTAGAGACGATGGAATGGACTGCTGATAA 1018
||||||||| ||||||||||| || ||||| ||||||||||||||||||||||| || ||
Sbjct 720 ATCACCAGAAAAGGTAAAGACGACACTTAAACTAGAGACGATGGAATGGACTGCCGACAA 779
Query 1019 GTGGAGAGATGCGGATATATTAGTGTTTAACACGGGTCATTGGTGGAACTATGAGAAAAC 1078
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 780 GTGGAGAGATGCGGATATATTAGTGTTTAACACAGGACATTGGTGGAACTACGAGAAAAC 839
Query 1079 TATTCGCGGAGGTTGTTACTTTCAAGAAGGAGAAAAAGT-AAGAATGAGAATGAAGATAG 1137
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 840 TATTCGCGGAGGTTGTTACTTTCAAGAAGGAGAAAAAGTGCA-AATGAGAATGAAGATAG 898
Query 1138 AGCATGCGTATAGACGAGCTATGAAGACTGTAATGAAATGGATACAAGAAGAGGTTGATG 1197
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 899 AGCATGCGTATAGACGAGCTATGAAGACCGTTATGAAATGGATACAAGAAGAGGTTGATG 958
Query 1198 CAAACAAGACACAGGTTTTCTTTCGGACATTTGCCCCTGTGCATTTCAGGGGAGGAGATT 1257
|||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||
Sbjct 959 CAAACAAGACACAGGTCTTCTTCCGCACATTTGCCCCTGTGCATTTCAGGGGAGGAGATT 1018
Query 1258 GGAGAACTGGAGGAACATGTCATATGGAGACACTGCCTGATTTTGGAGCTTCTCTGGTTC 1317
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1019 GGAGAACCGGAGGAACATGTCATATGGAGACACTGCCTGATTTTGGAGCCTCTCTGGTTC 1078
Query 1318 CAGCAGAGACATGGGATCATATAAAGCTCCTTCAAGATGTCTTGTCTTCGTCTCTTTACT 1377
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1079 CAGCAGAGACATGGGATCATATAAAGCTCCTTCAAGATGTCTTGTCATCGTCTCTTTACT 1138
Query 1378 ACTCGAACATATCAGAGACGGTTAAACTGAAAGTGTTGAACATAACAGCCATGGCTGCTC 1437
||| ||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1139 ACTTGAAAACATCAGAGACGGTTGAACTGAAAGTGTTGAACATAACAGCCATGGCTGCTC 1198
Query 1438 AAAGAAACGATGGTCACCCATCACTGTACTACCTGGGCTTGGCTGGTCCTGCGCCATTCC 1497
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1199 AAAGAAACGATGGTCACCCATCACTGTACTACTTGGGCTTGGCTGGTCCTGCGCCATTCC 1258
Query 1498 ACAGGCAAGACTGCAGCCATTGGTGTCTCCCTGGAGTTCCTGATTCGTGGAATGAGCTTC 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ACAGGCAAGACTGCAGCCATTGGTGTCTCCCTGGAGTTCCTGATTCGTGGAATGAGCTTC 1318
Query 1558 TTTATGCATTGTTTCTAAAGCATGAAGGCTATTCAAGTCCAAGATCAAACAATAGCGATA 1617
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1319 TTTATGCATTGTTTCTAAAGCATGAAGGCTATTCAAGTCCAATATCAAACAATAGCGATA 1378
Query 1618 CAGACAACTTTACATAA 1634
|||||||||||||||||
Sbjct 1379 CAGACAACTTTACATAA 1395
> Ahg482040 jgi|Araly1|482040|fgenesh2_kg.4__1100__AT2G31110.2
Length=1288
Score = 65.8 bits (35), Expect = 1e-09
Identities = 54/63 (86%), Gaps = 2/63 (3%)
Strand=Plus/Plus
Query 1505 AGACTGCAGCCATTGGTGTCTCCCTGGAGTTCCTGATTCGTGGAA-TGAGCTTCTTTATG 1563
|||||||||||||||||||||||||||| | |||||| | ||||| | | ||||| || |
Sbjct 1045 AGACTGCAGCCATTGGTGTCTCCCTGGACTCCCTGATACTTGGAACTCA-CTTCTCTACG 1103
Query 1564 CAT 1566
|||
Sbjct 1104 CAT 1106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71609660600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5