BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19170.1
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326316 jgi|Araly1|326316|fgenesh1_pm.C_scaffold_6001536 1260 0.0
> Ahg326316 jgi|Araly1|326316|fgenesh1_pm.C_scaffold_6001536
Length=1173
Score = 1260 bits (682), Expect = 0.0
Identities = 1004/1154 (87%), Gaps = 43/1154 (4%)
Strand=Plus/Plus
Query 11 TGACGATGCTCCTTATCATGGGACA---CTTCATACAACTGGGAGTTTCAGTTATTCCAG 67
||| |||||| ||||||||||| || |||||| ||||| |||||||||||||| ||||
Sbjct 20 TGATGATGCTTCTTATCATGGGTCAGTTCTTCATTCAACTTGGAGTTTCAGTTATCCCAG 79
Query 68 TTTCTACCATTTATAGTCCTGACGGCGATTTGATTGATTGTATCTACCGGA-CGGATCAA 126
||||||| ||||| |||||||| || ||| ||||| |||||||| ||| || ||||||||
Sbjct 80 TTTCTACTATTTACAGTCCTGATGGAGATGTGATTAATTGTATCAACC-GAGCGGATCAA 138
Query 127 CGAGCCTTCGACCACCCAC-TCTTACGAAACCATATTATTCAGGAATATCCTACCAACAT 185
| ||| ||| | ||||||| || ||| ||||||||| |||||||||||||| ||| |||
Sbjct 139 CCAGCATTCAATCACCCACTTC-TACAAAACCATATAATTCAGGAATATCCCACCGGCAT 197
Query 186 GCCACAAATAGAAAAAAG-CGTACAAGAA-AATTGGCAAATTTGGCACGACACCGGAGAA 243
||||||||||| | | || ||||||| || ||||||||||| |||||||| || ||||||
Sbjct 198 GCCACAAATAG-AGAGAGACGTACAA-AAGAATTGGCAAATCTGGCACGAGACGGGAGAA 255
Query 244 AAGTGTCCGGCAGAG-ACGATTCCTATGCGTCGGGAATTGAATCC---AGTTTCTCACCA 299
|| ||||| || | | |||||||| || |||||||| ||| |||| |||| |||| |
Sbjct 256 AATTGTCCAGC-GGGAACGATTCCCATACGTCGGGATTTGGATCCAAAAGTTCCTCA-C- 312
Query 300 AAAGCAGCATGTACATGTTCCAAAAGAG-T-ATGAGGTCGCCAACAGAGCAACTTCAGGG 357
||| | | | || | || |||| | | |||||||| |||||| ||| ||| | |||
Sbjct 313 AAA--A--A-G--CA-G--CC-AAAG-GTTCATGAGGTCACCAACAAAGCCACTAC-GGG 359
Query 358 -CACAAGTATGCAATTGCATACATG-ATTAACCGGAC-AAATGTGTACGGAACAAGGGCA 414
||||||||||| |||||||| ||| | |||||| | ||| |||||||| ||||||| |
Sbjct 360 ACACAAGTATGCTATTGCATATATGCA-AAACCGG-CAAAAAGTGTACGGTACAAGGGTA 417
Query 415 ACGTTTAATGTCTGGACACCAAAGGTAGAATCGGCTTACGATTTTAGCCTCGCTCAGATT 474
||||| |||||||||||||||| ||||||||| ||| ||||||||||||||| || |||
Sbjct 418 ACGTTAAATGTCTGGACACCAATTGTAGAATCGTCTTTCGATTTTAGCCTCGCACAAATT 477
Query 475 TGGCTGGCATCTGGGTCATACGAGACTGCGGATCTCAATACTGTTGAAGCCGGTTGGCAG 534
||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 478 TGGTTGGCATCTGGGTCATACGAGACTGCGGATCTCAATACCGTAGAAGCTGGTTGGCAG 537
Query 535 GTTTCTCGGTCGAGGTATAATGACAGCCAGGCC-AGATTGTTTACATATTGGACGGCGGA 593
|||| | |||| |||||||||||||| || ||| |||||||||||||||||||||||||
Sbjct 538 GTTTTTAGGTCAAGGTATAATGACAGTCA-GCCGCGATTGTTTACATATTGGACGGCGGA 596
Query 594 TGGATATAACAAGACCGGGTGTTATGGCCTCGACCTTCCTGGATTTGTGCAGACTAGCAG 653
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 597 TGGATATAACAACACCGGGTGTTATGGCCTCGACCGTCCTGGATTTGTGCAGACTAGCAG 656
Query 654 TACCATCGCCATCGGAGCTGCCATTGGTCGCACCTCGACATATGGAGGCACCCAGTTTGA 713
||||||||||||||||||||| |||||| ||||||| |||| ||||||||||| ||||||
Sbjct 657 TACCATCGCCATCGGAGCTGCGATTGGTTGCACCTCAACATTTGGAGGCACCCCGTTTGA 716
Query 714 CATGACACTTCAGATCTGGAAGGATCTGTTTTCAGGACATTGGTGGCTGGCTCTGGGCCC 773
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 717 CATGACGCTTCAGATCTGGAAGGATCCGTTTTCAGGACATTGGTGGCTGGCTCTAGGCCC 776
Query 774 AAATTTAGTGCCCATTGGATACTGGCCGGCCGTAATTTTCACGACCTTATCCGATTATGC 833
||| ||||||| || || |||||||||||| |||||||||||||||||||||| ||||
Sbjct 777 CAATATAGTGCCGATAGGGTACTGGCCGGCCACAATTTTCACGACCTTATCCGATCATGC 836
Query 834 GACGGCAGTTGAATGGGGAGGCGAAGTATTATACCGAAACCTGTCGAGCGTGAATACGGT 893
|| | | |||||||||||||| |||||||||||||| ||||| ||| ||||||| |||||
Sbjct 837 GAAGACGGTTGAATGGGGAGGGGAAGTATTATACCGGAACCTCTCGGGCGTGAACACGGT 896
Query 894 GGCTCAAATGGGTTCAGGAGAATATGCCGACAAAGGCTATGGGAAA-GCGGCATATTTCT 952
||| |||||||||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 897 GGCCCAAATGGGTTCAGGGGAATATGCCGACAAAGGCTA-CGGAAATGCGGCATATTTCT 955
Query 953 GCAATCTGAAGGTGGCAGAGAACAACCACACCCTTCTCCCGGTTCAAGATTTCGGCGTTC 1012
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 956 GCAATCTGAAGGTGGCAGAGAACAACCACACCCTTCTCCCGGTCCAAGATTTCGGCGTTC 1015
Query 1013 AAGCCGATTATCCAGAATATTATACCGTTAAGAAGTCATCTAACCGGAACTGCGGAAACC 1072
||||||||| ||| ||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 1016 GAGCCGATTACCCACAATATTATACCGTTAAGAAGTCATCCAACCGCAACTGCGGTAACC 1075
Query 1073 ATTTTTATTTCGGCGGACCAGGACCTCAACGTTCAGAAGCAGTTCGGGGAACAACGGttt 1132
| |||||||||||||||||||| ||||||||||| | ||| |||||||||||| ||||
Sbjct 1076 ACTTTTATTTCGGCGGACCAGGGCCTCAACGTTCGGGAGCGGTTCGGGGAACAGTAGTTT 1135
Query 1133 ttggtttttgcttt 1146
|| |||||| |||
Sbjct 1136 CTGCTTTTTG-TTT 1148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48225490005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5