BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19175.1
Length=249
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326314 jgi|Araly1|326314|fgenesh1_pm.C_scaffold_6001534 213 5e-55
> Ahg326314 jgi|Araly1|326314|fgenesh1_pm.C_scaffold_6001534
Length=252
Score = 213 bits (115), Expect = 5e-55
Identities = 211/256 (82%), Gaps = 11/256 (4%)
Strand=Plus/Plus
Query 1 ATGGGTA-T-C-AAAACTTTGATTATCTTTTTTCATATTTTCATATTAGCAGTTTTATCG 57
||||||| | | |||| |||| | ||||||||||| ||| |||| ||||||||||| | |
Sbjct 1 ATGGGTATTGCAAAAAATTTGGTGATCTTTTTTCACATTGTCATCTTAGCAGTTTTGTTG 60
Query 58 TCCAAC-AATATCATTTTGACTTCAGGTGCAGAGATCAAAAAATTCTCATATGATCATTG 116
|||||| || ||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCCAACGAA-ATCATTTTGGCCTCAGGTGCAGAGATCAAAAAATTCTCATATGATCATTG 119
Query 117 CTTTCATTTATGTGTGG-CTGGCGAATACGGATCAAATGAATG-TTTCGTGGATTGTGCT 174
|| ||||| |||| || | || | || |||||| |||||| ||| || || ||| ||
Sbjct 120 CTACCATTTGTGTGAGGAC-GGAGGGTATGGATCACGTGAATGCTTT-GTAGACTGTACT 177
Query 175 CAAAAGGGATTTTGG-CATGGAGATTGTGCAAACCGAACTGAAAAAGATCCTATTCGATG 233
|||| ||||| | || ||||||||||||||||||||| |||||||||||| ||||
Sbjct 178 GAAAAAGGATTCCGTACA-GGAGATTGTGCAAACCGAACTCCCAAAGATCCTATTAGATG 236
Query 234 TTGTTGTTATAACTAA 249
|||||| ||||||||
Sbjct 237 TTGTTGCAATAACTAA 252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8630546986
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5