BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19200.1
Length=1204
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326319 jgi|Araly1|326319|fgenesh1_pm.C_scaffold_6001539 1554 0.0
Ahg477907 jgi|Araly1|477907|fgenesh2_kg.3__608__AT3G06060.1 654 0.0
> Ahg326319 jgi|Araly1|326319|fgenesh1_pm.C_scaffold_6001539
Length=993
Score = 1554 bits (841), Expect = 0.0
Identities = 946/997 (95%), Gaps = 5/997 (1%)
Strand=Plus/Plus
Query 43 ATGGCGGCAAttttttctctcttccttttcttcattctcttcatcgtctctcttctcatc 102
||||||||||||| ||||||||||||||||||||| |||||| |||| ||||| ||||||
Sbjct 1 ATGGCGGCAATTTCTTCTCTCTTCCTTTTCTTCATCCTCTTCCTCGTTTCTCTCCTCATC 60
Query 103 atcttatctttcatcGTACGGCCAAGATCCGTCACGATCCCCATCAAGTTTCGCCACGTC 162
|||||| ||||||||||||||||||||||||||| || |||||||||| || ||||||
Sbjct 61 ATCTTAGCTTTCATCGTACGGCCAAGATCCGTCAAAATTCCCATCAAGTCCCGTCACGTC 120
Query 163 TTCATCACCGGTGGATCAAGCGGAATCGGTCTCGCTCTCGCTCACCGTGCCGTCTCCGAA 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCATCACCGGTGGATCAAGCGGAATCGGTCTCGCTCTCGCTCACCGTGCCGTCTCCGAA 180
Query 223 GGCGCTAAAGTCTCCATCCTCGCTCGTTCAACTGAAAAGCTCGCCGAAGCCAAACGATCC 282
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 181 GGCGCTAAAGTCTCCATTCTCGCCCGATCAACTGAAAAGCTCGCCGAAGCCAAACGATCC 240
Query 283 ATCCAGCTAGCTACCGGTGTCGAGGTCGCCACGTTCTCTGCGGACGTTCGCGATTACGAC 342
||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||||||
Sbjct 241 ATCCAGCTAGCTACCGGCGTCGAGGTCGCTACGTTCTCTGCCGATGTTCGCGATTACGAC 300
Query 343 GCCGTTTCGAAAGC-GATTGATGAATCGGGACCGATCGATGTGTTGATTGTTAATCAAGG 401
||||||||||| || | |||| |||||||| |||||||||||||||||||||||||||||
Sbjct 301 GCCGTTTCGAAGGCTG-TTGACGAATCGGGGCCGATCGATGTGTTGATTGTTAATCAAGG 359
Query 402 CGTGTTTATTGGGAAAGAGCTTGAGAAACAGAGTCCTGAGGAGGTTAAGTTTATGATTGA 461
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 360 CGTGTTTATTGGGAAAGAGCTTGAGAAACAGAGTCCCGAGGAGGTTAAGTTCATGATTGA 419
Query 462 TGTGAATCTGACTGGGAGCTTCAATGTGATTAAGGCGGCTTTACCTGCTATGAAAGCTAG 521
|||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 420 TGTGAATCTGGTTGGGAGCTTCAATGTGATTAAAGCGGCTTTGCCTGCTATGAAAGCTAG 479
Query 522 GGAAGGTCGTGGTCCTGCTTCCATTTCTCTTGTGTCCTCTCAAGCTGGTCAGGCAGGTAT 581
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 480 GGAAGGTCGTGGTCCTGCTTCCATTTCTCTAGTGTCCTCTCAAGCTGGTCAGGCAGGTAT 539
Query 582 ATATGGTTACACTGCATATTCAGCGAGCAAGTTTGGGCTTCAGGGTTTAGCGCAAGCATT 641
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CTATGGTTACACTGCATATTCAGCGAGCAAGTTTGGGCTTCAGGGTTTAGCGCAAGCATT 599
Query 642 GCAGCAAGAAGTTATTTCTGATGGCATTCATGTGACTCTCTTGTTTCCTCCTGACACTGA 701
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 600 GCAGCAAGAAGTTATTTCTGATGACATTCATGTGACTCTCTTGTTTCCTCCTGACACTGA 659
Query 702 TACACCCGGGTTTGAACAAGAACTGAAGAAGAGGCCAGAGCTAACTTCAATCATAGCCGC 761
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TACACCCGGGTTTGAAGATGAACTGAAGAAGAGGCCAGAGCTAACTTCAATCATAGCCGC 719
Query 762 ATCATCTGGCTCAATGAAAACCAATGAAGTAGCCAAAATATGTTTTGATGGTATCAAAGC 821
||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 720 ATCGTCTGGCTCAATGAAAACCAATGAAGTAGCCAAGATATGTTTTGATGGAATCAAAGC 779
Query 822 AGGAAAATTCACAGTGACATGCCATTTTATTGGCTTCTTACTATCTATTGCTAGCACCGG 881
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 780 TGGAAAATTCACAGTGACATGCCATTTTATTGGCTTCTTACTATCAATTGCTAGCACCGG 839
Query 882 CATGTCCCCTCAGGGATCTTTTTGGCTTGCACTCACTGAAGTTATGTTTGGTGGTCTAAT 941
|||||||||||||||||| ||||||||||| |||| |||||||||||| |||||||||||
Sbjct 840 CATGTCCCCTCAGGGATCGTTTTGGCTTGCTCTCATTGAAGTTATGTTCGGTGGTCTAAT 899
Query 942 AAGACTCGCCAGCTTGGTTTTCCAATGGCAATGGTACAAAACCATAGAAAAGTGGAGCCA 1001
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 900 AAGACTCGTCAGCTTGGTTTTCCAATGGCAATGGTACAAAACCATAGAAAAGTGGAGT-A 958
Query 1002 AAGAAATAAAAAAGAAGTAAATAGTAAGTTAGCTTAG 1038
|| ||| |||||| |||||||||||||||||| ||||
Sbjct 959 AA-AAA-AAAAAACAAGTAAATAGTAAGTTAGATTAG 993
> Ahg477907 jgi|Araly1|477907|fgenesh2_kg.3__608__AT3G06060.1
Length=1207
Score = 654 bits (354), Expect = 0.0
Identities = 719/893 (81%), Gaps = 34/893 (4%)
Strand=Plus/Plus
Query 40 TCAATGGCGGCAAttttttctctcttcc-t-t-ttcttcattctc-ttcat-cgtctctc 94
||||||||||| |||| | || |||||| | | ||| |||||| | || | | ||||||
Sbjct 37 TCAATGGCGGCCATTTCTACTTTCTTCCTTCTCTTCCTCATTCCCATT-GTCCCTCTCTC 95
Query 95 --ttctcatc-atcttatctttcatcGTACGGCCAAGATCCGTCACGATCCCCATCAAGT 151
||||| | |||||| | | |||||||| || | || | | |||||| |||||||
Sbjct 96 GATTCTC-GCTATCTTAGCCCTAATCGTACGTCCTCGCCCCATTAAGATCCCTATCAAGT 154
Query 152 TTCGCCACGTCTTCATCACCGGTGGATCAAGCGGAATCGGTCTCGCTCTCGCTCACCGTG 211
|| ||||||||||||||||||||||| ||||| |||||||| |||||||| ||||| |
Sbjct 155 CCCGTCACGTCTTCATCACCGGTGGATCTAGCGGCATCGGTCTTGCTCTCGCCCACCGCG 214
Query 212 CCGTCT-CCGAAGGCGCTAAAGTCTCCATCCTCGCTCGTTCAACTGAAAAGCTCGCCGAA 270
||| || |||| || ||| ||||| |||||||| || || | | |||||| | |||
Sbjct 215 CCG-CTGCCGAGGGTGCTCGTGTCTCAATCCTCGCCCGATCCGCCGGAAAGCTAGAGGAA 273
Query 271 GCCAAACGATCCATCCAGCTAGCTACCGGTGTCG-AGGTCGCCACGTTCTCTGCGGACGT 329
|| ||| | |||||||| || || ||||||| | |||||||| ||||| || |||||
Sbjct 274 GCTAAAAAAGAGATCCAGCTGGCCACTGGTGTCGTA-GTCGCCACATTCTCCGCCGACGT 332
Query 330 TCGCGATTACGACGCCGTTTCGAAAGCGATTGATGAATCGGGACCGATCGATGTGTTGAT 389
|||||||||||| || || ||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 333 TCGCGATTACGATGCAGTGTCGAAGGCGATTGACGAATCTGGACCGATCGATGTGTTGAT 392
Query 390 TGTTAATCAAGGCGTGTTTATTGG-GAAAGAGCTTGAGAAACAGAGTCCTGAGGAGGTTA 448
|||||||||||| ||||||| || ||| ||||| | |||||| ||||||||||| || |
Sbjct 393 TGTTAATCAAGGTGTGTTTAC-GGCGAAGGAGCTGGTGAAACATAGTCCTGAGGATGTCA 451
Query 449 AGTTTATGATTGATGTGAATCT-GACTGGGAGCTTCAATGTGATTAAGGCGGCTTTACCT 507
| || | |||||| |||||||| | ||||||||||||||||||||| || ||||| ||
Sbjct 452 AATTCACGATTGACGTGAATCTTGT-TGGGAGCTTCAATGTGATTAAAGCCGCTTTGCCC 510
Query 508 GCTATGAAAGCTAGGGAAGGTCGTGGTCCTGCTTCCATTTCTCTTGTGTCCTCTCAAGCT 567
|| |||||||| ||| ||| |||||| ||||||||||| ||| || ||||||||||||
Sbjct 511 GCCATGAAAGCAAGGAAAGATCGTGGACCTGCTTCCATCAGTCTCGTCTCCTCTCAAGCT 570
Query 568 GGTCAGGCAGGTATATATGGTTACACTGCATATTCAGCGAGCAAGTTTGGGCTTCAGGGT 627
||||||| ||| | |||||||| ||||||||||||| ||||||||||| |||||||||
Sbjct 571 GGTCAGGTGGGTGTCTATGGTTATGCTGCATATTCAGCAAGCAAGTTTGGTCTTCAGGGT 630
Query 628 TTAGCGCAAGCATTGCAGCAAGAAGTTATTTCTGATGGCATTCATGTGACTCTC-TTGTT 686
||||| |||||| |||| |||||||||||| |||||| ||||||||| ||||| || ||
Sbjct 631 TTAGCACAAGCACTGCAACAAGAAGTTATTGCTGATGACATTCATGTCACTCTTATT-TT 689
Query 687 TCCTCCTGACACTGATACACCCGGGTTTGAACAAGAACTGAAGAAG-AGGCCAGA-GCTA 744
|||||||||||| |||||||||| |||||| |||||| ||||| | || || || | |
Sbjct 690 TCCTCCTGACACCAATACACCCGGCTTTGAAGAAGAACAGAAGA-GTAGACCTGAAG-TC 747
Query 745 ACTTCAATCATAGCCGCATCATCTGGCTCAATGAAAACC-AATGAAGTAGCCA-AAATAT 802
||| | || ||||| ||||| ||||| |||||| |||| || |||||||||| ||| |
Sbjct 748 ACTGCCATAATAGCTGCATCCTCTGGTTCAATGGAAACAGAA-GAAGTAGCCAGAAA-A- 804
Query 803 GTTTTG-ATGGTATCAAAGCAGGAAAATTCACAGTGACATGCCATTTT-ATTGGCTTCTT 860
| | || |||| || ||||||||||| ||||| || ||||| | ||| | || |||||
Sbjct 805 GCTATGGATGGCATAAAAGCAGGAAAGTTCACTGTCTCATGCAACTTTGAG-GGATTCTT 863
Query 861 ACTATCTATTGCTAGCA-CCGGCATGTCCCCTCAGGGATCTTTTTGGCTTGCA 912
||| ||| | || | || |||||||||||||||| |||| ||||||||||||
Sbjct 864 ACTGTCTCTCGCGA-CAACCGGCATGTCCCCTCAAAGATCATTTTGGCTTGCA 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44946919143
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5