BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19210.2
Length=1619
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488806 jgi|Araly1|488806|fgenesh2_kg.6__1940__AT5G19210.2 2318 0.0
> Ahg488806 jgi|Araly1|488806|fgenesh2_kg.6__1940__AT5G19210.2
Length=1558
Score = 2318 bits (1255), Expect = 0.0
Identities = 1398/1466 (95%), Gaps = 13/1466 (1%)
Strand=Plus/Plus
Query 1 CGGAGGTGCTCAAACTCAAAAATGGCGTCGCAGCTTCTTAATGTTCCTCATCTCGCTTTC 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 CGGAGGTGCTCAAACTCAAAAATGGCGTCCCAGCTTCTTAATGTTCCTCATCTCGCTTTC 60
Query 61 TTCCCTAAAATCTCA-----T-ATGCTTCCGTCTTCTCAACACTAAAGCCCAGTTTCTTC 114
||||||||||||||| | || || || |||||||||||||||||||||||||||||
Sbjct 61 TTCCCTAAAATCTCACCCTTTAATCCTCCCCTCTTCTCAACACTAAAGCCCAGTTTCTTC 120
Query 115 CACTCTACTTCCACTAGAAGAGCTCTCAAATCATCCCCCAGTTCCCGGATTATCAACCTC 174
||||||||||||||||| |||||||||||| | ||| ||| || |||||||||||||||
Sbjct 121 CACTCTACTTCCACTAGCAGAGCTCTCAAAACCTCCTCCAACTCTCGGATTATCAACCTC 180
Query 175 CAAGCCGTCGCCGAAACTAGCTCTGAAATCGAAAGCAATAGTGTCACTGAAACAACTG-T 233
||||||||||||||||||||||||||||||||||||||||||| |||| ||| || | |
Sbjct 181 CAAGCCGTCGCCGAAACTAGCTCTGAAATCGAAAGCAATAGTGCCACT--AAC-ACAGCT 237
Query 234 GCCATTGACTCTACGTCAAATCTGCCAAGGTTTTGTGCCCGAGCATATCTTGCACAGAAT 293
| | |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 238 G-CTTTGACTCTACGTAAAATCTGCCAAGGTTTTGTCCCCGAGCATATCTTGCACAGAAT 296
Query 294 GGAGGAGATTGGATTTGTCTTC-CCCACGGATATTCAAAGAGAAGCTCTTCCTACTTTGT 352
|||||||||||| ||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 297 GGAGGAGATTGGGTTTATC-TCTCCCACGGATATTCAAAGAGAAGCTCTTCCTACTTTGT 355
Query 353 TTACAGGCCGTGATTGCATCCTCCATGCTCAAACAGGTTCAGGAAAGACATTGACTTACC 412
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 356 TCACAGGCCGTGATTGCATCCTCCATGCTCAAACAGGTTCAGGAAAGACGTTGACTTACC 415
Query 413 TCTTACTCATATTCTCTCTTATAAACCCTCAACGATCTTCTGTGCAAGCTGTTATTGTTG 472
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 416 TGTTACTCATATTCTCTCTTATAAATCCTCAACGATCTTCTGTGCAAGCTGTTATTGTTG 475
Query 473 TTCCCACTCGAGAGCTCGGTATGCAAGTTACAAAAGTTGCTCGAATGTTGGCTGCAAAAT 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TTCCCACTCGAGAGCTCGGTATGCAAGTTACAAAAGTTGCTCGAATGTTGGCTGCAAAAT 535
Query 533 CGGAGATTGATGTGAAAGGATGTACTGTGATGGCTCTCTTAGATGGAGGGACGCTAAGAA 592
||||||||||||||||||| ||||| || |||||||| |||||||||||||| |||||||
Sbjct 536 CGGAGATTGATGTGAAAGGGTGTACGGTAATGGCTCTTTTAGATGGAGGGACACTAAGAA 595
Query 593 GGCACAAAAGCTGGCTAAAGGCTGAGCCACCAGCAATTTTGGTTGCTACGGTAGCAAGTT 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GGCACAAAAGCTGGCTAAAGGCTGAGCCACCAGCAATTTTGGTTGCTACGGTAGCAAGTT 655
Query 653 TGTGTCACATGCTAGAAAAGCACATATTTAGAATTGACTCGGTGAGAGTTCTTGTTGTAG 712
||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||| |
Sbjct 656 TGTGTCACATGCTAGAAAAACACATATTTAGACTTGACTCGGTGAAAGTTCTTGTTGTCG 715
Query 713 ATGAGGTTGATTTCTTATTCTACTCATCAAAGCAAGTTGGTTCTGTGCGGAAGCTTTTGA 772
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 716 ATGAGGTTGATTTCTTATTCTACTCATCAAAACAAGTTGGTTCTGTGCGGAAGCTTTTGA 775
Query 773 CATCATTTTCTTCATGCGATAAACGTCAGACAGTTTTTGCAAGTGCTTCTATTCCCCAGC 832
|||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 776 CATCATTTTCTTCATGCGATAAACGTCAGACAGTTTTTGCTAGTGCTTCCATACCCCAGC 835
Query 833 ATAAACATTTTGTGCATGACTGTATACAACAAAAGTGGACAAAGAGGGATGTTGTCCATG 892
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 836 ATAAACATTTTGTGCATGACTGTATACAGCAAAAGTGGACAAAGAGGGATGTTGTCCATG 895
Query 893 TTCATGTTAGCGCAATCATGCCCATGCCGTTGTGCCTTCTTCACAGATTTGTTATGTGTG 952
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TTCATGTTAGTGCAATCATGCCCATGCCGTTGTGCCTTCTTCACAGATTTGTTATGTGTG 955
Query 953 AGAAGACAAACAAGCATCAAGTACTACTTGCCTTGTTAGAGTCTGATGCACCTGAATCAG 1012
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 956 AGAAGACAAACAAGCATCAAGTACTGCTTGCCTTGTTAGAGTCTGATGCACCTGAATCAG 1015
Query 1013 CTATCATTTTTGTCGGCGAGCAGTCTGAGAAGTCAAAAAAGGCTGGAAATGATCCATCTA 1072
||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CTATCATATTTGTAGGGGAGCAGTCTGAGAAGTCAAAAAAGGCTGGAAATGATCCATCTA 1075
Query 1073 CAACTCTACTAATGGAATTCCTAAAAACTTCATATAAAGGCTCGCTGGAGATCCTCCTAC 1132
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1076 CAACTCTACTAATGGAATTCCTTAAAACTTCATATAAAGGCTCGTTGGAGATCCTCCTAC 1135
Query 1133 TAGAGGGGGATATGAATTTCAATTCACGAGCAGCTTCACTAACAGAAATCAGGCAAGGAG 1192
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 TAGAGGGGGACATGAATTTCAATTCACGAGCAGCTTCACTAACAGAAATCAGGCAAGGAG 1195
Query 1193 GAGGGTTTCTTCTTGTTTCTACTGATATTGCAGCAAGAGGGATTGATCTACCAGAAACAA 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 GAGGGTTTCTTCTTGTTTCTACTGATATTGCAGCAAGAGGGATTGATCTACCAGAAACAA 1255
Query 1253 CTCATATTTTTAACTTTGATCTCCCACAAACGGTTACAGATTATCTGCACCGAGCTGGAA 1312
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 CTCATATCTTCAACTTTGATCTCCCACAAACGGTTACAGATTATCTGCACCGAGCTGGAA 1315
Query 1313 GAGCTGGTCGAAAACCCTTTTCTGACAGGAAGTGCATTGTCGCTAATCTGATCACCTCGG 1372
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 1316 GAGCTGGTCGGAAACCCTTTTCTGACAGGAAGTGCATTGTTGCTAATCTGATCACGGCAG 1375
Query 1373 AGGAAAGATTTGTCTTGCAAAGATACGAAAATGAACTTATGTTCAGCTGCGAGGAAATGA 1432
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1376 AGGAGAGATTTGTCTTGCAAAGATACGAAAATGAACTTATGTTCAGCTGCGAGGAACGGA 1435
Query 1433 TGTTGTAGGTACAGTCTTAACTATCT 1458
|||||||||||||||||||| |||||
Sbjct 1436 TGTTGTAGGTACAGTCTTAAATATCT 1461
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60677760285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5