BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G19210.2 Length=1619 Score E Sequences producing significant alignments: (Bits) Value Ahg488806 jgi|Araly1|488806|fgenesh2_kg.6__1940__AT5G19210.2 2318 0.0 > Ahg488806 jgi|Araly1|488806|fgenesh2_kg.6__1940__AT5G19210.2 Length=1558 Score = 2318 bits (1255), Expect = 0.0 Identities = 1398/1466 (95%), Gaps = 13/1466 (1%) Strand=Plus/Plus Query 1 CGGAGGTGCTCAAACTCAAAAATGGCGTCGCAGCTTCTTAATGTTCCTCATCTCGCTTTC 60 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1 CGGAGGTGCTCAAACTCAAAAATGGCGTCCCAGCTTCTTAATGTTCCTCATCTCGCTTTC 60 Query 61 TTCCCTAAAATCTCA-----T-ATGCTTCCGTCTTCTCAACACTAAAGCCCAGTTTCTTC 114 ||||||||||||||| | || || || ||||||||||||||||||||||||||||| Sbjct 61 TTCCCTAAAATCTCACCCTTTAATCCTCCCCTCTTCTCAACACTAAAGCCCAGTTTCTTC 120 Query 115 CACTCTACTTCCACTAGAAGAGCTCTCAAATCATCCCCCAGTTCCCGGATTATCAACCTC 174 ||||||||||||||||| |||||||||||| | ||| ||| || ||||||||||||||| Sbjct 121 CACTCTACTTCCACTAGCAGAGCTCTCAAAACCTCCTCCAACTCTCGGATTATCAACCTC 180 Query 175 CAAGCCGTCGCCGAAACTAGCTCTGAAATCGAAAGCAATAGTGTCACTGAAACAACTG-T 233 ||||||||||||||||||||||||||||||||||||||||||| |||| ||| || | | Sbjct 181 CAAGCCGTCGCCGAAACTAGCTCTGAAATCGAAAGCAATAGTGCCACT--AAC-ACAGCT 237 Query 234 GCCATTGACTCTACGTCAAATCTGCCAAGGTTTTGTGCCCGAGCATATCTTGCACAGAAT 293 | | |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| Sbjct 238 G-CTTTGACTCTACGTAAAATCTGCCAAGGTTTTGTCCCCGAGCATATCTTGCACAGAAT 296 Query 294 GGAGGAGATTGGATTTGTCTTC-CCCACGGATATTCAAAGAGAAGCTCTTCCTACTTTGT 352 |||||||||||| ||| || || ||||||||||||||||||||||||||||||||||||| Sbjct 297 GGAGGAGATTGGGTTTATC-TCTCCCACGGATATTCAAAGAGAAGCTCTTCCTACTTTGT 355 Query 353 TTACAGGCCGTGATTGCATCCTCCATGCTCAAACAGGTTCAGGAAAGACATTGACTTACC 412 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 356 TCACAGGCCGTGATTGCATCCTCCATGCTCAAACAGGTTCAGGAAAGACGTTGACTTACC 415 Query 413 TCTTACTCATATTCTCTCTTATAAACCCTCAACGATCTTCTGTGCAAGCTGTTATTGTTG 472 | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 416 TGTTACTCATATTCTCTCTTATAAATCCTCAACGATCTTCTGTGCAAGCTGTTATTGTTG 475 Query 473 TTCCCACTCGAGAGCTCGGTATGCAAGTTACAAAAGTTGCTCGAATGTTGGCTGCAAAAT 532 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 476 TTCCCACTCGAGAGCTCGGTATGCAAGTTACAAAAGTTGCTCGAATGTTGGCTGCAAAAT 535 Query 533 CGGAGATTGATGTGAAAGGATGTACTGTGATGGCTCTCTTAGATGGAGGGACGCTAAGAA 592 ||||||||||||||||||| ||||| || |||||||| |||||||||||||| ||||||| Sbjct 536 CGGAGATTGATGTGAAAGGGTGTACGGTAATGGCTCTTTTAGATGGAGGGACACTAAGAA 595 Query 593 GGCACAAAAGCTGGCTAAAGGCTGAGCCACCAGCAATTTTGGTTGCTACGGTAGCAAGTT 652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 596 GGCACAAAAGCTGGCTAAAGGCTGAGCCACCAGCAATTTTGGTTGCTACGGTAGCAAGTT 655 Query 653 TGTGTCACATGCTAGAAAAGCACATATTTAGAATTGACTCGGTGAGAGTTCTTGTTGTAG 712 ||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||| | Sbjct 656 TGTGTCACATGCTAGAAAAACACATATTTAGACTTGACTCGGTGAAAGTTCTTGTTGTCG 715 Query 713 ATGAGGTTGATTTCTTATTCTACTCATCAAAGCAAGTTGGTTCTGTGCGGAAGCTTTTGA 772 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 716 ATGAGGTTGATTTCTTATTCTACTCATCAAAACAAGTTGGTTCTGTGCGGAAGCTTTTGA 775 Query 773 CATCATTTTCTTCATGCGATAAACGTCAGACAGTTTTTGCAAGTGCTTCTATTCCCCAGC 832 |||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||| Sbjct 776 CATCATTTTCTTCATGCGATAAACGTCAGACAGTTTTTGCTAGTGCTTCCATACCCCAGC 835 Query 833 ATAAACATTTTGTGCATGACTGTATACAACAAAAGTGGACAAAGAGGGATGTTGTCCATG 892 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 836 ATAAACATTTTGTGCATGACTGTATACAGCAAAAGTGGACAAAGAGGGATGTTGTCCATG 895 Query 893 TTCATGTTAGCGCAATCATGCCCATGCCGTTGTGCCTTCTTCACAGATTTGTTATGTGTG 952 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 896 TTCATGTTAGTGCAATCATGCCCATGCCGTTGTGCCTTCTTCACAGATTTGTTATGTGTG 955 Query 953 AGAAGACAAACAAGCATCAAGTACTACTTGCCTTGTTAGAGTCTGATGCACCTGAATCAG 1012 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 956 AGAAGACAAACAAGCATCAAGTACTGCTTGCCTTGTTAGAGTCTGATGCACCTGAATCAG 1015 Query 1013 CTATCATTTTTGTCGGCGAGCAGTCTGAGAAGTCAAAAAAGGCTGGAAATGATCCATCTA 1072 ||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016 CTATCATATTTGTAGGGGAGCAGTCTGAGAAGTCAAAAAAGGCTGGAAATGATCCATCTA 1075 Query 1073 CAACTCTACTAATGGAATTCCTAAAAACTTCATATAAAGGCTCGCTGGAGATCCTCCTAC 1132 |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 1076 CAACTCTACTAATGGAATTCCTTAAAACTTCATATAAAGGCTCGTTGGAGATCCTCCTAC 1135 Query 1133 TAGAGGGGGATATGAATTTCAATTCACGAGCAGCTTCACTAACAGAAATCAGGCAAGGAG 1192 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1136 TAGAGGGGGACATGAATTTCAATTCACGAGCAGCTTCACTAACAGAAATCAGGCAAGGAG 1195 Query 1193 GAGGGTTTCTTCTTGTTTCTACTGATATTGCAGCAAGAGGGATTGATCTACCAGAAACAA 1252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1196 GAGGGTTTCTTCTTGTTTCTACTGATATTGCAGCAAGAGGGATTGATCTACCAGAAACAA 1255 Query 1253 CTCATATTTTTAACTTTGATCTCCCACAAACGGTTACAGATTATCTGCACCGAGCTGGAA 1312 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1256 CTCATATCTTCAACTTTGATCTCCCACAAACGGTTACAGATTATCTGCACCGAGCTGGAA 1315 Query 1313 GAGCTGGTCGAAAACCCTTTTCTGACAGGAAGTGCATTGTCGCTAATCTGATCACCTCGG 1372 |||||||||| ||||||||||||||||||||||||||||| |||||||||||||| | | Sbjct 1316 GAGCTGGTCGGAAACCCTTTTCTGACAGGAAGTGCATTGTTGCTAATCTGATCACGGCAG 1375 Query 1373 AGGAAAGATTTGTCTTGCAAAGATACGAAAATGAACTTATGTTCAGCTGCGAGGAAATGA 1432 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1376 AGGAGAGATTTGTCTTGCAAAGATACGAAAATGAACTTATGTTCAGCTGCGAGGAACGGA 1435 Query 1433 TGTTGTAGGTACAGTCTTAACTATCT 1458 |||||||||||||||||||| ||||| Sbjct 1436 TGTTGTAGGTACAGTCTTAAATATCT 1461 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60677760285 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5