BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19260.1
Length=1047
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488810 jgi|Araly1|488810|fgenesh2_kg.6__1944__AT5G19260.1 1478 0.0
> Ahg488810 jgi|Araly1|488810|fgenesh2_kg.6__1944__AT5G19260.1
Length=1001
Score = 1478 bits (800), Expect = 0.0
Identities = 945/1012 (93%), Gaps = 21/1012 (2%)
Strand=Plus/Plus
Query 1 AAAAACATCTCTCTGCTTCTTTAGTTTCACATCTCACACAAGTCTTTG----CTCTCTCT 56
||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||
Sbjct 1 AAAAACATCTCTCTGCTTCTTTAGTTTCATATCT--CACAAGTCTTTGCTCTCTCTCTCT 58
Query 57 TAACAG-TTTTTCTTCTATCATCTTTAAACTATGGGAACTGTTGTGTATCAACAAGGGTT 115
|||||| ||||| || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 59 TAACAGATTTTT-TTTTATCCTCTTTAAACTATGGGAACTGTTGTGTATCAACAAGGGTT 117
Query 116 TCAGTCTCAGCTTAATGAGCCTAGGGCTTTAAGGCTTAGGCTATCTTCACCAAATCCTCA 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 TCAGTCTCAGCTTAATGAGCCTAGGGCTTTAAGGCTTAGGCTATCTTCACCAAATCCTCA 177
Query 176 CTTTTCTCAACCATTTGGTTTAGCTCTCAAATCTCATTTACTTGACTCCTCTCATGCAGA 235
||| |||||||| |||||| |||||||||| ||||||||||||||||||||| |||||||
Sbjct 178 CTTCTCTCAACCCTTTGGTCTAGCTCTCAAGTCTCATTTACTTGACTCCTCTAATGCAGA 237
Query 236 GGACACCCGAAACCGTAACGATGACAAAGCTGCTGCTTCCCCGGTCTCTGACTCGAGTGG 295
||||||||| | ||||| |||||||||| ||||||||||| ||| | |||||||||||||
Sbjct 238 GGACACCCGTATCCGTAGCGATGACAAATCTGCTGCTTCCTCGGGCCCTGACTCGAGTGG 297
Query 296 CTGGAGCTCTCTCCAGTCCCTATCCTCTGGCTCCTCCTCCTC--C-ACAAAGACGACGAC 352
|||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 298 CTGGAGCTTTCTCCAGTCCCTATCCTCTGGCTCCTCCTCCTCATCCACAAAGACGAC-A- 355
Query 353 AAGCTCTGAGAAAGAGAGTAGTTACT-ATGTTCAACGTCCGTCTTCTTGTAGAGCTCTAA 411
| ||||||||||||||| || ||| |||||||||||||||| ||||||||||||||||
Sbjct 356 A-GCTCTGAGAAAGAGA--AG--ACTTATGTTCAACGTCCGTCCTCTTGTAGAGCTCTAA 410
Query 412 GCGACCAGAGCTTAGCATTGTGCACTGAGAATCTCGGAAGCGAATCTGGTTCTGATGTTA 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 GCGACCAGAGCTTAGCATTGTGCACTGAGAATCTCGGAAGCGAATCTGGTTCTGATGTTA 470
Query 472 CAGATATTGATGAGTTGTTCTCGCTTGACGTGCAAACCAAGAATCTCGGGGAAACAACAA 531
|||| || ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 471 CAGACATCGATGATTTGTTCTCGCTTGACGTGCAGACCAAGAATCTCGGGGAAACAACAA 530
Query 532 CGGAGACAAGAACGTTAAAAAGTAGGAAAAGGAGTGTGAGCCCTAGTGATCTCCCACCTC 591
||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 531 CGGAGACAAGAACGTTAAAAAGTAGGAAAAGAAATTTGAGCCCTAGTGATCTCCCACCTC 590
Query 592 CTTTGACCACTATGAGAGGATTTCAATGCATTCAAATGAGACCACACCGTGAAAACGGAA 651
||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||
Sbjct 591 CTTTGACCACTATGAGAGGGTTTCAATGCATTCAAATGAGACCACGCCGTGAAGACGGAA 650
Query 652 GATTGGTCATGACCGCCACAAACGCGCCTCCTCGTAACGGATGCTTTCAAGCTGACCGTA 711
|||||||||||||||||||||| || || ||||||||||| |||||||||||||||||||
Sbjct 651 GATTGGTCATGACCGCCACAAAAGCACCGCCTCGTAACGGGTGCTTTCAAGCTGACCGTA 710
Query 712 GCAATGGTCGTCTCCGTCTCTCTATCTTGAAAGACTCCA-ATGAGTTTGTAGAGAACGAA 770
||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||
Sbjct 711 GCAATGGTCGTCTCCGTCTTTCTATCTTGAAAGACTC-AGATGAGTTTGTAGAGAACGAA 769
Query 771 GAAGAGACTATTGAGCCtgaagaaaccgaagaatacgaggaggaggaggaagaggaagaa 830
|||||||| ||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 770 GAAGAGACGATTGAGCCTGAAGAAACCGAAGAATACGAGGAGGAGGAGGAGGAAGAGGAA 829
Query 831 gatgaagatgaagatgaagTGATGGGCATTGAGAATGTTCAAGTATCAAGAAGATGTGTT 890
|| || ||||| |||||||| ||||||||||||||||||||| | |||||||||||||||
Sbjct 830 GAAGAGGATGATGATGAAGTTATGGGCATTGAGAATGTTCAAATGTCAAGAAGATGTGTT 889
Query 891 CAAGGCGATCGGGAAAACAGGGGATTGCTAAATTGGGAATCTTTCTGCGTTGCTACTTCC 950
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 890 CAAGGCGACCGGGAAAACAGAGGATTGCTAAATTGGGAATCTTTCTGCGTTGCTACTTCC 949
Query 951 TAAAAGAGAGAAACTTCTTATTTTGCTCTGTATTTACAATTTCACAATTTTT 1002
|||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 950 TAAAAGAGAGAAACTTCTTAATCTGCTCTGTATTTACAATTTCACAATTTTT 1001
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38961621174
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5