BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19280.2
Length=2164
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488811 jgi|Araly1|488811|fgenesh2_kg.6__1945__AT5G19280.1 2276 0.0
> Ahg488811 jgi|Araly1|488811|fgenesh2_kg.6__1945__AT5G19280.1
Length=2056
Score = 2276 bits (1232), Expect = 0.0
Identities = 1376/1443 (95%), Gaps = 20/1443 (1%)
Strand=Plus/Plus
Query 1 GTGAAAATACGATAAGAGA-AAGaaaaaaaaaaaaCAGAGAAGGTAAGAAAAATTCAAAG 59
|||||| | |||||||||| | |||||||||||| | ||||||||||||||||||||||
Sbjct 1 GTGAAATTTCGATAAGAGAGACCAAAAAAAAAAAA-AAAGAAGGTAAGAAAAATTCAAAG 59
Query 60 CGAGGTTCTCGGGAACCAATCTGGAAGGAGGAGGGGTGCagagagagagagagagagaga 119
|||||||||||||||||||||||||| ||||||||||||||||||| || || ||| ||
Sbjct 60 CGAGGTTCTCGGGAACCAATCTGGAAAGAGGAGGGGTGCAGAGAGA-AGCGA-AGA-CGA 116
Query 120 gaAGCGAAGACGATGGCGATGATAGGGATGAACATTATTGGGCTATTCATGGTTCTTATG 179
||| | | | | || ||| |||||||||||||||| |||||||||| ||||||
Sbjct 117 -TGGCG-ATA-G-T--AGA-GAT---GATGAACATTATTGGGATATTCATGGTGCTTATG 166
Query 180 TTGCTTCTCATCTCCCTCATCATCCTTTTCGCCTGCAAGCCATGGCGATATTTTTCTCGT 239
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 167 TTGCTTCTCATCTCCCTCATCATCCTTTTCGCCTGCAAGCCATGGCGATACTTTTCTCGT 226
Query 240 TTCCGATCCTCCTCTCGTTTTTCTTCTACCTTCAAGGTGGGGGATTTGCAGAGACCACTT 299
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 TTCCGA---TCCTCTCGTTTTTCTTCTACCTTCAAGGTGGGGGATTTGCAGAGACCACTT 283
Query 300 ATTTCTGATGATGGAAATTTGATCCAAGGACAAACCAGTGAGGTAACAAGGGAATATGAT 359
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 284 ATATCTGATGATGGAAATTTGATCCAAGGCCAAACCAGTGAGGTAACAAGGGAATATGAT 343
Query 360 TTAGAGGGAGCTTGCTACCAAAATGATGGACTTTTGCATTCATCTCTGACTGAGGGACGG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 TTAGAGGGAGCTTGCTACCAAAATGATGGACTTTTGCATTCATCTCTGACTGAGGGACGG 403
Query 420 TTTTACAAACAAAGGCTTCCTTCGTCATCTCCCCATTTCTCCCAAGGTGAAAGCTTTGTT 479
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||
Sbjct 404 TTTTACAAACAAAGGCTTCCTTCATCATCTCCCCATTTCACCCAAGGTGAAAGCTTCGTT 463
Query 480 CTAGAAGTAATTTCTGAACCTTCTGACAATGCTTTGGTGGGCCAAACGCTTAAACTTCCA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 CTAGAAGTAATTTCTGAACCTTCTGACAATGCTTTGGTGGGCCAAACGCTTAAACTTCCA 523
Query 540 GCTGAAAAAGGTTCCTTGGCAGAAGTGCAAACATATGACTGGCAGAATAACAGAAATGAA 599
||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 524 GCTGAGAAAGGTTCCTTGACAGAAGTGCAATCATATGACTGGCAGAATAACAGAAATGAA 583
Query 600 AACTTGCAATATAATCTGGAAAAGGATCGACTTATTAATCTTTCTCCGAGG-CTCGTGGA 658
|||||||||||| |||||||||||||| || ||||||||||||||||| || ||||||||
Sbjct 584 AACTTGCAATATGATCTGGAAAAGGATAGAGTTATTAATCTTTCTCCG-GGACTCGTGGA 642
Query 659 AGATCAAAGAAGTTGGCTGTTCCTGGAAGTCATCGCGGGTCCTGCCATTGGGCTTCAACA 718
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 643 AGATCAAAGAAGTTGGCTGTCCCTGGAAGTCATTGCGGGTCCTGCCATTGGGCTTCAACA 702
Query 719 TGCTGTGAACTCCACAAGTTCCTCCAAGCTGCCAGTGAAACTTGGAAGGGTTTCTCCTTC 778
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 TGTTGTGAACTCTACAAGTTCCTCCAAGCTGCCAGTGAAACTTGGAAGGGTTTCTCCTTC 762
Query 779 TGATTTGGCATTGAAGGACTCAGAAGTCTCTGGGAAACATGCACAGATAACATGGAACTC 838
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 763 TGATTTGGCATTGAAGGACTCAGAAGTCTCAGGAAAACATGCACAGATAACATGGAACTC 822
Query 839 TACTAAATTTAAATGGGAGCTGGTAGATATGGGTAGCCTAAATGGAACTCTCGTAAACTC 898
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 TACTAAATTGAAATGGGAGCTGGTAGATATGGGTAGCCTAAATGGAACTCTCGTAAACTC 882
Query 899 TCATTCAATAAGTCATCCTGATTTAGGCAGCCGGAAGTGGGGTAACCCTGTCGAGCTTGC 958
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 TCAGTCAGTAAGTCATCCTGATTTAGGCAGCCGGAAGTGGGGTAACCCTGTCGAGCTTGC 942
Query 959 AAGTGATGATATAATAACTTTGGGAACAACAACAAAGGTCTATGTCCGTATCTCCTCTCA 1018
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 943 AAGTGATGATATAATAACTTTGGGAACAACTACAAAGGTCTATGTCCGTATCTCATCTCA 1002
Query 1019 GAATGAGTTTCAGATACCCTTCAAAATTGGTGTGGCCTCAGATCCCATGGCTATGCGTCG 1078
|||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||
Sbjct 1003 GAATGAGTTTCAGATACCCTTCAAAATTGGCGTGGCCTCAGATCCCATGGCTGTACGTCG 1062
Query 1079 AGGAGGCAGGAAACTTCCGATGGAAGATGTTTGTCATTACAAGTGGCCGCTTCCTGGGGC 1138
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1063 AGGAGGCAAGAAACTTCCGATGGAAGATATTTGTCATTACAAGTGGCCGCTTCCTGGGGC 1122
Query 1139 TAATAAGTTTGGACTGTTTTGTGTTTGTGATGGACATGGGGGATCAGGGGCTGCTCAATC 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1123 TAATAAGTTTGGACTGTTTTGTGTTTGTGATGGACATGGGGGATCAGGGGCTGCTGAATC 1182
Query 1199 CGCAATCAAAATTATTCCGGAGGTTCTAGCGAATATTTTATCAGACTCGCTGAGGAAGGA 1258
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1183 CGCAATCAAAATTATTCCGGAGGTTCTAGGGAATATTTTATCAGACTCGCTGAGGAAGGA 1242
Query 1259 GAAAGTGTTATCAAAAAGGGATGCTTCGGACGTCCTTAGGGACATGTTTGCTAAAACAGA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1243 GAAAGTGTTATCAAAAAGGGATGCTTCGGACGTCCTTAGGGACATGTTTGCCAAAACAGA 1302
Query 1319 AGCTCGCCTCGAAGAACACCAATATGAGGGTTGTACAGCTACTGTTCTCTTGGTTTGGAA 1378
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1303 AGCTCGCCTCGATGAACACCTATATGAGGGTTGTACAGCTACTGTTCTCTTGGTTTGGAA 1362
Query 1379 AGACAATGAAGAAAACTTCTTCGCACAATGTGCCAATCTTGGGGATTCAGCATGTGTTAT 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 AGACAATGAAGAAAACTTCTTCGCACAATGTGCCAATCTTGGGGATTCAGCATGTGTTAT 1422
Query 1439 CCA 1441
|||
Sbjct 1423 CCA 1425
Score = 961 bits (520), Expect = 0.0
Identities = 598/635 (94%), Gaps = 7/635 (1%)
Strand=Plus/Plus
Query 1471 ATCTTGGTGGCAGATATATACAAATGACTGAAGATCATCGAGTGGTTAGCTTGAGCGAGA 1530
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1425 ATCTTGATGGCAGATATATACAAATGACTGAAGATCATCGAGTGGTGAGCTTGAGCGAGA 1484
Query 1531 GAAAACGATTCCAAGAAGCAGGACTAGCCTTGAGAGATGGAGAGACTCGGCTTTTTGGTA 1590
||||||||||||||||||| ||| || ||||||||||||||||||||||| | || ||||
Sbjct 1485 GAAAACGATTCCAAGAAGCCGGAGTACCCTTGAGAGATGGAGAGACTCGGATCTTCGGTA 1544
Query 1591 TAAACCTTGCGAGGATGCTTGGAGACAAGTTTCCAAAGCAACAAGACAGCCGTTTCAGTG 1650
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1545 TAAACCTTGCGAGGATGCTTGGAGACAAATTTCCAAAGCAGCAAGACAGCCGTTTCAGTG 1604
Query 1651 CAGAGCCATATATAAGTGAGCCTTTGCGTATCGATCAATCTAGTAAAGACGTATTTGCTG 1710
|||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||
Sbjct 1605 CAGAGCCATATATAAGTGAGCCTTTGCGTATCAATCAATCTAGTAAAGATGTCTTTGCTG 1664
Query 1711 TATTGGCTAGTGACGGGTTATGGGACGTGGTAAGTCCGAAGAAAGCTGTGCAGCTTGTAC 1770
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1665 TATTGGCCAGTGACGGGTTATGGGACGTGGTAAGTCCGAAGAAAGCTGTGCAGCTGGTAC 1724
Query 1771 TTCAGATgagagataaagagagagggagagagagTAGTGCGGAGAAGATAGCAAACGGTC 1830
||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1725 TTCAGATGAGAGACAAAGAGAGAGGGACAGAGAATAGTGCGGAGAAGATAGCAAACGGTC 1784
Query 1831 TGCTGAATGAAGCTAGAGCGATGCGTACAAAGGACAACACCTCCATTATTTACTTAGATT 1890
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||
Sbjct 1785 TGCTGAATGAAGCTAGAGCGATGCGTACGAAGGACAACACCTCCATTGTTTACTTAGGTT 1844
Query 1891 TCGATACTTCCCTGTAATGTTAGGAAACATCTTTT-AAGATATTTGGGAAGTGTCTTTCT 1949
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1845 TCGATACTTCCCTGTAATGTTAGGAAACATCTTTTTAAGATATTTGGGAAGTGTCTTTCT 1904
Query 1950 TTTGTGTACCATCTTTTTATGTATTAGTATTTTTGTTAGGGTATAAGAGAGACaaaaaaa 2009
||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1905 TTTGTGTACTATCTTTTCATGTATTAGTATTATTGTTAGGGTATAAGAGAGACAAAAAAA 1964
Query 2010 ---CCTCAGATGCAGAGATTTAGGATGGATCGTCTTGGTGAGCGACATTGGTTTCATTAT 2066
|||||| ||||||| | |||||||| |||||| ||||||||||||||||||||| |
Sbjct 1965 AAACCTCAGGTGCAGAGCTGTAGGATGGTTCGTCT-GGTGAGCGACATTGGTTTCATC-T 2022
Query 2067 CTTTACTTATATAATTAATAATATTATCAGTTAAA 2101
||| ||||||||||||||||||||||||||||||
Sbjct 2023 CTTG-CTTATATAATTAATAATATTATCAGTTAAA 2056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81436943810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5