BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19290.1
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941476 jgi|Araly1|941476|scaffold_602020.1 1555 0.0
> Ahg941476 jgi|Araly1|941476|scaffold_602020.1
Length=1024
Score = 1555 bits (842), Expect = 0.0
Identities = 945/996 (95%), Gaps = 1/996 (0%)
Strand=Plus/Plus
Query 37 TTTTGGTGG-AAAAAACCAGAAAATGGGGTTGCATCCAATTTCCGACGCCAATGAACACA 95
|||||| || |||||| || |||||||| ||||||||||||||||||||||| |||||||
Sbjct 1 TTTTGGGGGAAAAAAAACAAAAAATGGGTTTGCATCCAATTTCCGACGCCAACGAACACA 60
Query 96 ATCCCTTCGGCTCTCTCACCGCCGACGAATTCTACGCCAAACATTCCGTTAGCCACTCCT 155
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCCCTTCGGATCTCTCACCGCCGACGAATTCTACGCCAAACATTCCGTTAGCCACTCCT 120
Query 156 CCGCTTTCATCACCAACCCTCGCGGTCTCAAACTCTTCACTCAATGGTGGTCACCACTCC 215
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 121 CCGCTTTCATCACCAACCCTCGTGGTCTCAAGCTCTTCACTCAATGGTGGTCACCACTCC 180
Query 216 CTCCAACTAAACCAATCGGTATCATCGCTGTCGTTCATGGCTTCACCGGCGAATCCAGTT 275
|||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| |
Sbjct 181 CTCCAACTAAACCAATCGGTATCATCGCCGTCGTTCACGGCTTCACCGGCGAAACCAGCT 240
Query 276 GGTTCCTTCAGCTCACATCAATCCTCTTCGCTAAATCCGGTTTCATAACCTGCGCAATTG 335
||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 241 GGTTCCTCCAGCTCACATCAATCCTTTTCGCTAAATCCGGTTTCATCACTTGCGCAATTG 300
Query 336 ATCACCAAGGCCATGGATTCTCCGATGGACTCATCGCTCATATCCCTGACATCAATCCCG 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATCACCAAGGCCATGGATTCTCCGATGGACTCATCGCTCATATCCCTGACATCAATCCCG 360
Query 396 TCGTCGATGACTGTATCTCTTTCTTCGATGACTTCCGTAGCCGTCAAACACCGTCAGATC 455
|||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||
Sbjct 361 TCGTCGATGACTGTATCTCTTTCTTCGATGACTTTCGTAGCCGTCAATCGCCGTCAGATC 420
Query 456 TGCCGTGTTTTCTCTACTCTGAATCCCTAGGCGGCGCGATTGCTCTCTACATCTCGCTTC 515
||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 421 TGCCGTGTTTTCTTTACTCTGAATCTCTAGGCGGCGCGATTGCTCTCTATATCTCGCTCC 480
Query 516 GTCAGAGAGGTGTTTGGGATGGACTTATCCTCAACGGAGCTATGTGTGGAATCAGCGATA 575
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 481 GTCAGAGAGGTGTTTGGGATGGGCTTATCCTCAACGGAGCTATGTGTGGAATCAGCGATA 540
Query 576 AATTCAAACCGCCGTGGCCGTTGGAGCATTTGCTATTCGTCGTCGCGAATCTTATCCCTA 635
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 541 AATTCAAACCGCCGTGGCCGTTGGAGCATTTGCTCTTCGTCGTCGCGAATCTTATCCCTA 600
Query 636 CTTGGCGCGTTATCCCCACTCGCGGATCTATTCCCGATGTTTCGTTCAAGGAGCCGTGGA 695
| |||||||||||||| || ||||||||||||||||||||||| ||||||||| | ||||
Sbjct 601 CCTGGCGCGTTATCCCTACGCGCGGATCTATTCCCGATGTTTCTTTCAAGGAGGCTTGGA 660
Query 696 AGAGGAAGCTTGCCATGGCTAGCCCAAGGAGGACGGTGGCGAAACCACGGGCCGCTACTG 755
||||||||||||| ||||||||||| || ||||||||||||| |||||| ||||| || |
Sbjct 661 AGAGGAAGCTTGCGATGGCTAGCCCTAGAAGGACGGTGGCGAGACCACGCGCCGCCACGG 720
Query 756 CTTATGAGCTGATTCGTGTTTGTAAGGATCTGCAGGGGAGGTTTGAGGAAGTGGAGGTTC 815
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 721 CTTATGAGCTGATTCGTGTCTGTAAGGATCTGCAGGAGAGGTTTGAGGAAGTGGAGGTTC 780
Query 816 CGCTTCTGATTGTGCACGGCGGAGGTGATGTTGTATGCGACGTAGCGTGTGTTGAGGAGC 875
||||||||||||||||||||||||| ||||| | |||||||| |||||||| |||||||
Sbjct 781 CGCTTCTGATTGTGCACGGCGGAGGCGATGTAATCTGCGACGTGGCGTGTGTAGAGGAGC 840
Query 876 TTCATCGGAGAGCGATTAGTGAGGATAAGACGATCAAGATCTACCCTGAGTTGTGGCATC 935
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 841 TTCATCGGAGAGCGATTAGTGAGGATAAGACGATCAAGATCTACCCTGAGCTGTGGCATC 900
Query 936 AGATGATTGGGGAATCGGAGGAGAAAGTCGATCTGGTTTACGGTGATATGCTGAGCTGGC 995
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 901 AGATGATTGGGGAATCGGAGGAGAAAGTCGATCTAGTTTACGGTGACATGCTGAGCTGGC 960
Query 996 TCAAGAGTCGAGCTGAAAGGAAGGCACGCGCCGCCG 1031
||||||||||||| ||||||||||||||||||||||
Sbjct 961 TCAAGAGTCGAGCGGAAAGGAAGGCACGCGCCGCCG 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45938114985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5