BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19300.1
Length=1441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941477 jgi|Araly1|941477|scaffold_602021.1 1578 0.0
> Ahg941477 jgi|Araly1|941477|scaffold_602021.1
Length=1186
Score = 1578 bits (854), Expect = 0.0
Identities = 917/948 (97%), Gaps = 1/948 (0%)
Strand=Plus/Plus
Query 276 GAGGAGGAAAAGGGAAATGTAGAAGAGGGTAGAGCCACTGTTAGCATAGCCATAGCTGGT 335
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 228 GAGGAGGAAAAGCGAAATGTAGAAGACGGTAGAGCCACTGTTAGCATAGCCATAGCTGGT 287
Query 336 TCAATCATCCACAACACTCAATCACTTGAGCTCGCCACACGCCTCGCCGGCCAAATTGCT 395
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 288 TCAATCATCCACAACACTCAATCACTCGAGCTCGCTACACGCCTCGCCGGCCAAATTGCT 347
Query 396 CGTGCAGCTACAATTTTCCGAATCGACGAGATCGTAGTGTTCGACAATAAGAGCAGCTCA 455
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 348 CGTGCAGCTACAATTTTCCGAATCGACGAGATTGTAGTGTTCGACAATAAGAGCAGCTCA 407
Query 456 GAAATCGAATCAGCTGCTACGAATGCTTCTGATAGCAATGAAAGTGGTGCCTCCTTTCTC 515
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 408 GAAATCGAATCAGCTGCTATGAATCCTTCTGATAGCAATGAAAGTGGTGCCTCCTTTCTC 467
Query 516 GTTCGTATCTTGAAGTATCTAGAGACACCACAATATTTGAGGAAATCTCTCTTCCCCAAG 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 GTTCGTATCTTGAAGTATCTAGAGACACCACAATATTTGAGGAAATCTCTCTTCCCCAAG 527
Query 576 CAAAATGATCTTAGATATGTGGGTATGTTGCCACCTCTTGATGCTCCTCACCATCTGCGT 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 CAAAATGATCTTAGATATGTGGGTATGTTGCCACCTCTTGATGCTCCTCACCATCTGCGT 587
Query 636 AAGCACGAGTGGGAACAATACCGTGAAGGTGTGACACTGAGTGAAAAGGCTCCAAATTCT 695
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 588 AAGCACGAGTGGGAACAATACCGTGAAGGTGTCACACTGAGTGAAAAGGCTCCAAACTCT 647
Query 696 GAGGGTACATTGGTTGATGTGGGTTTAAGCAAGAGTGTTGTTGTTGATCAAGTGCTGGGT 755
|| | |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 648 GACGCTACAATGGTTGATGTGGGTTTAAGCAAGAGTGTTGTTGTTGATCAAGTGCTGAGT 707
Query 756 CCAGGAATTAGAGTCACGGTAGCCATGGGAACTGACCACGATTTAGATTTGGTACGCCAG 815
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 CCAGGAGTTAGAGTCACGGTAGCCATGGGAACTGACCACGATTTAGATTTGGTACGCCAG 767
Query 816 ATTGTTCCACCCTCTAAGCCAAGGGAAGAAGCAGGAATGTATTGGGGATACAAAGTACGA 875
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 ATTGTTCCGCCCTCTAAGCCAAGGGAAGAAGCAGGAATGTATTGGGGATACAAAGTACGA 827
Query 876 TATGCATCACAATTAAGTTCAGTATTCAAGGAATGCCCTTTCGAGGGTGGTTACGATTAT 935
||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||
Sbjct 828 TATGCATCACAATTAAGTTCAGTATTCAAGGAATGTCCTTTCCAGGGTGGATACGATTAC 887
Query 936 TTGATTGGTACCTCGGAGCACGGCCTGGTAATTAGTTCATCTGAGCTGAAAATACCAACA 995
||||| ||||||||||| ||||| |||| ||||||||||| ||||||||||||||||||
Sbjct 888 TTGATCGGTACCTCGGAACACGGATTGGTTATTAGTTCATCAGAGCTGAAAATACCAACA 947
Query 996 TTTAGGCACCTATTGATTGCATTTGGTGGACTTGCTGGGCTTGAAGAAAGTATTGAAGAT 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 TTTAGGCACCTATTGATTGCATTTGGTGGACTTGCTGGGCTTGAAGAAAGTATTGAAGAT 1007
Query 1056 GATAATCAGTATAAGGGGAAAAACGTTCGAGATGTGTTTAATGTATACTTGAATACTTGT 1115
||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1008 GATAACCAGTATAAGGGGAAAAACGTGCGAGATGTGTTTAATATATACTTGAATACTTGT 1067
Query 1116 CCACATCAAGGTAGCCGAACCATTCGAGCAGAGGAAGCGATGTTTATATCACTTCAGTAC 1175
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 CCACATCAAGGAAGCCGAACCATTCGAGCAGAGGAAGCGATGTTTATATCACTTCAGTAC 1127
Query 1176 TTCCAGGAACCCATCAGCAGGGCAGTGAGAAGACTTTAAGCTTCGATA 1223
||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1128 TTCCAAGAACCCATCAGCAGGGCAGTGAGAAGACTTTAAGCTT-GATA 1174
Score = 326 bits (176), Expect = 4e-88
Identities = 222/242 (92%), Gaps = 12/242 (5%)
Strand=Plus/Plus
Query 1 ACTCGCCGGCGGCAGAGATGGGGAAGAAGAACAAGAGAAGTCAAGACGAGTCTGAGCTCG 60
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 4 ACTCGCCGGCGGCAGAAATGGGGAAGAAGAACAAGAGAAGTCAAGACGAGCCTGAGCTCG 63
Query 61 AATTGGAGCCAGAGCTAACGAAAATAATCGATGGAGACTCTaaaaagaagaaaaataaga 120
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 64 AATTGGAGCCAGAGCTAACGAAAATAATCGACGGAGACTCTAAAAAGAAG------AAGA 117
Query 121 ataagaagaagagaagccatgaagatacggagatagaaCCGGAGCAAAAGATGAGTCTCG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 ATAAGAAGAAGAGAAGCCATGAAGATACGGAGATAGAACCGGAGCAAAAGATGAGTCTCG 177
Query 181 ACggagactcgaaggaggagaagataaagaagaagaggaagaacaagaaccaagaggagg 240
||||||| ||||| ||||||||| | |||||||| |||||| ||| | |||||||||
Sbjct 178 ACGGAGAGGCGAAGAAGGAGAAGA-A--GAAGAAGAAGAAGAAAAAG--C-AAGAGGAGG 231
Query 241 ag 242
||
Sbjct 232 AG 233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53897696675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5