BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19310.1
Length=3322
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488814 jgi|Araly1|488814|fgenesh2_kg.6__1948__AT5G19310.1 4900 0.0
Ahg903463 jgi|Araly1|903463|Al_scaffold_0003_591 2326 0.0
> Ahg488814 jgi|Araly1|488814|fgenesh2_kg.6__1948__AT5G19310.1
Length=3235
Score = 4900 bits (2653), Expect = 0.0
Identities = 3057/3251 (94%), Gaps = 32/3251 (1%)
Strand=Plus/Plus
Query 88 ggcaacagaaaattaaataatctaatt--------agaaa-cTCCCGCCATGGTGAAGCA 138
||||||| ||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 1 GGCAACATAAAATTAAATAATCTAATTCGAAACACAGAAAGTTCCCGCCATGGAGAAGCA 60
Query 139 GCTACAAGAGCAGGAGGAGAACGATCCCGTCGAGAAGACAAAGTCTCTGATCTCTGCTCT 198
||||||| |||| | ||| ||||||| || |||||||| ||||||||||||||||||||
Sbjct 61 GCTACAACAGCA--A-GAGGACGATCCTGTAGAGAAGACCAAGTCTCTGATCTCTGCTCT 117
Query 199 TAACTACCTTTCTCGCGACCTTCTCTTGCCTTCTCACCTTTACGCTTCCGTTTCTTCTAT 258
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 118 TAACTACGTTTCTCGCGACCTTCTCTTGCCTTCTCACCTTTACGCTTCCGTTTCTTCCAT 177
Query 259 TTACCATGCCTCCGTCTCCGATCTCTCTCCTTCTCCGCCTCTTCGTGGAAATAGTTATAC 318
||||||| |||||||||||||||||||||| ||||||||||||||| |||| ||| |||
Sbjct 178 CTACCATGGCTCCGTCTCCGATCTCTCTCCTCCTCCGCCTCTTCGTGAAAATTGTTTTAC 237
Query 319 TCCCAATAGAGGTGATTTGATGAGCGAGTTCGAAGATGCACTTTTGCAA-CAGCGACTAA 377
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 238 TCCCAATAGAGGTGATTTGATGAGCGAGTTCGAAGATGCACTTTTG-AAGCAGCGACTAA 296
Query 378 ACTATGAATCAGGCTCTCGACTAGCCGAGTTAAAGGAAACTCGGTATAAGAATCGTATCC 437
||| |||||||||||||||||| ||| | || ||||||||||| ||||||| |||| |||
Sbjct 297 ACTGTGAATCAGGCTCTCGACTTGCCCAATTTAAGGAAACTCGCTATAAGAGTCGTTTCC 356
Query 438 ACAACCGATTATCTCAACTTGAAGGATTACCTTCCAATAGAGGTGAAGATTTGCAGGAAA 497
| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 AGAATCGATTATCTGAACTTGAAGGATTACCTTCCAATAGAGGTGAAGATTTGCAGGAAA 416
Query 498 AATGCTTACTTGAGCTTTATGGTCTTAAGTTACAAGAACTACAATGCAGGGTTCGGGGTG 557
|||||||||||||||||||||| |||||| || ||||||||||||||| |||||||| ||
Sbjct 417 AATGCTTACTTGAGCTTTATGGGCTTAAGCTAAAAGAACTACAATGCAAGGTTCGGGCTG 476
Query 558 AGGTGAGTGCGGAATACTGGCTGCGTTTGAATTGTGCAGATCCGGAGAGACAACTATATG 617
||||||| |||||||||||||||||||||||||||||| |||| || || ||||||||||
Sbjct 477 AGGTGAGCGCGGAATACTGGCTGCGTTTGAATTGTGCACATCCTGAAAGCCAACTATATG 536
Query 618 ATTGGGGCATGATGCGGTTGCCTCGCCGAATGTATGGGGTTGGAGATTCTTTTGTTATGG 677
| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 537 ACTGGGGCATGATGCGGTTGCCTCGCCGAATGTATGGGGTTGGAGATCCTTTTCATATGG 596
Query 678 AAGCTGATGATCAGTTCAGGAACAAGCGTGATGCCGAGAGGTTATTACGGTTAGAAGAAG 737
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 597 AAGCTGATGATCAGTTCAGAAACAAGCGTGATGCCGAGAGGTTATTACGGTTAGAAGAGG 656
Query 738 AGGAGAAGAATCTGATTGAAACGACACAGAGGAAATTCTTTGCAGAAGTACTCAATGCTG 797
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 657 AGGAGAAGAATCTCATTGAAACGACACAGAGGAAATTCTTTGCAGAAATACTCAATGCTG 716
Query 798 TTCGTGAATTCCAGTTGCAAATTCAGGCGTCTCATAGACGGTGTAAGCAAAGAAATGATG 857
|||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||
Sbjct 717 TTCGTGAATTCCAGTTACAAATTCAGGCGACTCATAGACGCTGTAAGCAAAGAAATGATG 776
Query 858 GTGTCCAGGCCTGGCATGGAAAGCAAAGGCAACGTGCCACCCGAGCTGAAAAACTAAGGA 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GTGTCCAGGCCTGGCATGGAAAGCAAAGGCAACGTGCCACCCGAGCTGAAAAACTAAGGA 836
Query 918 TCATGGCCCTTAAATCTGATGATCAAGAGGAATACATGAAACTAGCAAAGGAAAGTAAGA 977
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 837 TCATGGCCCTTAAATCTGATGATCAAGAGGAATACATGAAACTAGCAAAGGAGAGTAAAA 896
Query 978 ACGAAAAACTAACCCTTTTTCTAGAGGAGACAAACAAAATCTTTGTTAGTTTGGGGGCTG 1037
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 897 ACGAAAAACTAACTCTTTTCCTAGAGGAGACAAACAAAATCTTTGTTAGTTTGGGAGCTG 956
Query 1038 CAGTCCAGCGTCAGAAAGATGCCAAACTTTCAGAAAACACCAAATTACTGAAAGGCTCAG 1097
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 957 CAGTCCAGCGTCAGAAAGATGCCAAACTTTCAGAAAACATCAAACTACTGAAAGGCTCAG 1016
Query 1098 AATCTGACTTATCTGATGTTGATGCTCCTGA-GGATGTGCTTCCTGCCCAAGATATTGAG 1156
|||||||||||||||||||||||||||| | |||||||||||||| ||||||||||| |
Sbjct 1017 AATCTGACTTATCTGATGTTGATGCTCCC-ACGGATGTGCTTCCTGACCAAGATATTGGG 1075
Query 1157 ATCATTGACTCTGACAATAATGATGATTCTAATGACTTACTAGAAGGCGAGAGGCAGTTT 1216
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1076 ATCATTGACTCTGACAATAATGATGATTCTAATGACTTACTAGAAGGCGAGAGGCAGTAT 1135
Query 1217 AACTTGGCTATCCATTCCATACAAGAGAAGGTGACAAAGCAGCCATCCCTTCTACAAGGT 1276
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 AACTTGGCTATTCATTCAATACAAGAGAAGGTGACAAAGCAGCCATCCCTTCTACAAGGT 1195
Query 1277 GGGGAACTAAGATCCTATCAATTAGAAGGACTTCAATGGATGGTCTCTCTATACAACAAT 1336
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1196 GGGGAACTAAGATCCTACCAATTAGAAGGGCTTCAATGGATGGTCTCTCTATACAACAAC 1255
Query 1337 GACTATAATGGCATTTTAGCTGATGAAATGGGTTTAGGAAAGACTATCCAAACGATTGCA 1396
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1256 GACTATAATGGCATTTTAGCTGATGAAATGGGTTTGGGAAAGACTATCCAAACAATTGCA 1315
Query 1397 CTGATTGCGTATCTTCTTGAGAGTAAAGATCTTCATGGGCCTCATCTAATATTGGCTCCA 1456
|||||||||||||||||||| |||||| || | |||||||||||||||||| ||||||||
Sbjct 1316 CTGATTGCGTATCTTCTTGAAAGTAAAAATGTGCATGGGCCTCATCTAATAGTGGCTCCA 1375
Query 1457 AAAGCTGTGCTACCAAATTGGGAAAATGAGTTTGCATTATGGGCACCCAGCATTTCCGCT 1516
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1376 AAAGCTGTGCTACCAAATTGGGAAAATGAGTTTGCAACATGGGCACCCAGCATTTCCGCT 1435
Query 1517 TTTCTTTACGATGGATCAAAGGAGAAAAGAACTGAAATAAGAGCAAGAATAGCAGGAGGA 1576
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1436 TTTCTTTACGATGGATCAAAGGAGAAAAGAACTGAAATAAGAGCCAGAATAGCAGGAGGA 1495
Query 1577 AAATTTAATGTGTTGATAACCCACTACGATCTTATCATGAGAGATAAAGCATTTTTGAAG 1636
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 AAATTTAGCGTATTGATAACCCACTACGATCTTATCATGAGAGATAAAGCATTTTTGAAG 1555
Query 1637 AAAATTGACTGGAACTACATGATTGTTGATGAAGGACATCGTCTGAAGAACCATGAATGT 1696
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1556 AAAATTGACTGGAATTACATGATTGTTGATGAAGGACATCGGCTGAAGAACCATGAATCT 1615
Query 1697 GCTCTCGCAAAGACTCTAGGAACTGGCTACCGGATTAAGCGCAGACTTCTATTAACTGGA 1756
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1616 GCTCTAGCAAAGACTCTAGGAACTGGCTACCGTATTAAGCGCAGACTTCTATTAACTGGG 1675
Query 1757 ACTCCCATACAGAACAGTCTGCAAGAACTATGGTCGCTGCTTAATTTTCTTCTTCCTCAC 1816
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1676 ACTCCCATACAGAACAGTCTGCAAGAACTATGGTCGCTGCTTAATTTTCTCCTTCCTCAC 1735
Query 1817 ATCTTTAACTCAATTCATAATTTCGAAGAATGGTTTAATACTCCATTCGCAGAATGTGGT 1876
||||||||||| ||||| |||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1736 ATCTTTAACTCGATTCAGAATTTCGAAGAATGGTTTAATACTCCTTTCGCAGAACGTGGC 1795
Query 1877 AGTGCCAGTCTTACAGATGAAGAGGAGCTGTTGATTATTAACCGTCTGCATCATGTCATA 1936
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1796 AGTGCCAGTCTTACAGATGAAGAGGAGCTGTTGATTATTAATCGTCTGCATCATGTCATC 1855
Query 1937 AGGCCGTTTCTACTGAGAAGGaaaaaaaGTGAGGTTGAGAAATTCCTTCCTGGAAAGACA 1996
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1856 AGGCCGTTTCTACTGAGAAGGAAAAAAAGTGAAGTTGAGAAATTCCTTCCTGGAAAGACA 1915
Query 1997 CAAGTCATACTGAAGTGTGATATGTCGGCTTGGCAAAAATTGTATTACAAACAAGTTACA 2056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 CAAGTCATACTGAAGTGTGATATGTCGGCTTGGCAAAAATTGTATTACAAACAAGTTACA 1975
Query 2057 GACGTAGGCAGGGTCGGTCTTCATTCTGGCAATGGGAAATCAAAGAGTCTGCAGAATCTG 2116
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1976 GATGTAGGCAGGGTTGGTCTTCATTCTGGCAATGGGAAATCAAAGAGTCTGCAGAATCTG 2035
Query 2117 ACAATGCAATTAAGAAAGTGTTGTAACCATCCGTACCTATTCGTTGGAGCAGATTATAAC 2176
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 2036 ACAATGCAATTAAGAAAGTGTTGTAACCATCCGTACCTATTTGTTGGAGGAGATTATAAC 2095
Query 2177 ATGTGTAAGAAGCCTGAGATTGTGAGAGCTTCAGGAAAATTCGAGTTACTTGATCGCCTC 2236
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2096 ATGTGGAAGAAGCCTGAGATTGTGAGAGCTTCAGGAAAATTCGAGCTACTTGATCGCCTC 2155
Query 2237 CTTCCAAAACTGAAGAAAGCTGGACATAGAATTCTGCTCTTTTCTCAAATGACTCGTCTC 2296
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 2156 CTTCCGAAACTGAAGAAAGCTGGACATAGAATTCTTCTCTTCTCTCAAATGACTCGTCTC 2215
Query 2297 ATTGACCTTCTCGAAATTTACTTGTCACTCAATGACTACATGTACCTCAGACTTGACGGT 2356
|| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 2216 ATCGACCTTCTCGAAATTTACTTGACACTCAATGACTACATGTACCTCAGACTCGACGGT 2275
Query 2357 AGCACAAAGACAGACCAAAGAGGGATTTTACTGAAGCAATTCAACGAACCGGACTCTCCC 2416
| |||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||
Sbjct 2276 ACCACAAAGACAGACCAAAGAGGGGTTTTACTGAAGCAATTCAATGAACCGGAGTCTCCC 2335
Query 2417 TACTTTATGTTTCTTCTGAGCACACGTGCTGGTGGTCTTGGTTTGAACTTACAAACTGCA 2476
||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 2336 TACTTCATGTTTCTTTTGAGCACACGTGCCGGTGGTCTTGGTTTGAACTTACAAACAGCA 2395
Query 2477 GACACTATAATTATATTTGACAGTGATTGGAATCCACAAATGGACCAGCAAGCAGAGGAT 2536
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 2396 GACACTATTATTATATTTGACAGTGATTGGAATCCACAAATGGACCAGCAGGCGGAGGAT 2455
Query 2537 CGTGCTCATCGGATAGGGCAGAAAAAGGAAGTGAGAGTTTTTGTTTTGGTTAGCATTGGA 2596
||||| || ||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 2456 CGTGCCCACCGGATAGGGCAGAAAAAGGAAGTGAGAGTGTTTGTTTTGGTTAGTATTGGC 2515
Query 2597 TCCATTGAAGAAGTAATATTGGAGCGTGCAAAGCAAAAGATGGGCATCGATGCGAAAGTC 2656
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 2516 TCTATTGAAGAGGTAATATTGGAGCGTGCAAAGCAAAAGATGGGCATTGATGCCAAAGTC 2575
Query 2657 ATACAAGCAGGGCTCTTCAACACAACTTCTACTGCTCAAGACAGGAGAGAGATGCTGGAA 2716
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2576 ATACAAGCAGGACTCTTCAACACAACTTCTACTGCTCAAGACAGGAGAGAGATGCTGGAA 2635
Query 2717 GAGATCATGAGCAAAGGAACAAGCTCACTGGGAGAAGATGTGCCAAGTGAGAGAGAGATT 2776
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2636 GAGATCATGAGCAAAGGAACAAGCTCACTGGGGGAAGATGTGCCAAGTGAGAGAGAGATT 2695
Query 2777 AACCGGCTCGCAGCTCGAACTGAGGAAGAGTTTTGGATGTTTGAACAAATGGACGAGGAA 2836
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 2696 AACCGGCTCGCAGCTCGAACGGAGGATGAGTTTTGGATGTTTGAACAAATGGACGAGGAA 2755
Query 2837 AGACGTAAAAAGGAGAACTACAAGACACGTCTCATGGAAGAGAAGGAAGTTCCCGAGTGG 2896
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2756 AGACGGAAAAAGGAGAACTACAAGACACGTCTCATGGAAGAGAAGGAAGTTCCTGAGTGG 2815
Query 2897 GCTTACACTTCAGAGACTCAAGAAGACAAGA-CTAACGCGAAAAACCATTTTGGTAGCCT 2955
||||||||||||||||||||||||||||||| | | | |||||||||||||| |||||
Sbjct 2816 GCTTACACTTCAGAGACTCAAGAAGACAAGAACGATT-CAAAAAACCATTTTGGCAGCCT 2874
Query 2956 CACGGGTAAACGGAAACGAAAAGAAGCAGTGTATAGCGACTCTTTAAGCGATTTGCAGTG 3015
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2875 CACGGGTAAACGGAAACGAAAAGAAGCAGTGTACAGCGACTCTTTAAGCGATTTGCAGTG 2934
Query 3016 GATGAAAGCGATGGAGAGTGAAGACGAAGATGCTTCCAAAGTCTCTCAGAAACGAAAGAG 3075
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2935 GATGAAAGCGATGGAGAGTGAAGACGAAGATGCTTCCAAAGTCTCTAAGAAACGAAAGAG 2994
Query 3076 AACGGACACAAAGACAAGAATGAGTAATGGGTCAAAGGCAGAGGCTGTGTTGAGTGAAAG 3135
|| ||||||||||||| ||||||||||||||||||||||||||| | | || | |
Sbjct 2995 AAGGGACACAAAGACACCAATGAGTAATGGGTCAAAGGCAGAGGCAGAGGC-AGAG---G 3050
Query 3136 CGATgaggaaaaagaagaagaagaagaagaaaggaaggaggagagtgggaaagagagtga 3195
| | ||| | | |||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 3051 C-A-GAGTCGAGTG--GAAGC-GAAGAGGAAAGAAAGGAGGAGAGTGGGAAAGAGAGTGA 3105
Query 3196 agaagaaaatgagaag---CCATTACATAGTTGGAAAACTAATAAGAAGAAACGGTCAAG 3252
||||||||| |||||| |||||| |||||||||||||| |||||||||||||||||||
Sbjct 3106 AGAAGAAAACGAGAAGAAGCCATTAAATAGTTGGAAAACTCATAAGAAGAAACGGTCAAG 3165
Query 3253 ATACCCTGTTATGACTTCTTCACCTAATTCTAGAGGTAA-AGGTAGCTCAAAAGGAAGTA 3311
|||| || ||||||||||||||||||| ||||||||||| || |||||| || ||||| |
Sbjct 3166 ATACTCTCTTATGACTTCTTCACCTAACTCTAGAGGTAAGAG-TAGCTCCAACGGAAGCA 3224
Query 3312 AACGAAACTGA 3322
|||||||||||
Sbjct 3225 AACGAAACTGA 3235
> Ahg903463 jgi|Araly1|903463|Al_scaffold_0003_591
Length=3393
Score = 2326 bits (1259), Expect = 0.0
Identities = 2006/2363 (85%), Gaps = 65/2363 (3%)
Strand=Plus/Plus
Query 714 AGAGGTTATTACGGTTAGAAGAAGAGGAGAAGAATCTGATTGAAA-CGACACAGAGGAAA 772
||||||||| ||| ||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 710 AGAGGTTATCACGTTTAGAAGAAGAGGAGAAGAATCTGATTGAAACCGCCA-AGAGGAAA 768
Query 773 TTCTTTGCAGAAGTACTCAATGCTGTTCGTGAATTCCAGTTGCAAATTCAGGCGTCTCAT 832
||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||
Sbjct 769 TTCTTTGCAGAAGTACTTAATGCAGTTCGTGAATTCCAGTTGCAAATTCAGGCGACTCAA 828
Query 833 AGACGGTGTAAGCAAAGAAATGATGGTGTCCAGGCCTGGCAT-GGAAAGCAAAGGCAACG 891
| ||| ||| |||||| ||||||||||| ||||| |||||| ||| | ||||| |||||
Sbjct 829 AAACGCCGTAGGCAAAGGAATGATGGTGTGCAGGCTTGGCATGGGAGA-CAAAGACAACG 887
Query 892 TGCCACCCGAGCTGAAAAACTAAGGATCATGGCCCTTAAATCTGATGATCAAGAGGAATA 951
||| ||||| |||||||| | ||| ||||||||||||| |||||||||||||||| |||
Sbjct 888 TGCTACCCGTGCTGAAAAGTTGAGGCTCATGGCCCTTAAGTCTGATGATCAAGAGGCATA 947
Query 952 CATGAAACTAGCAAAGGAAAGTAAGAACGAAAAACTAACC-CTTTTTCTAGAGGAGACAA 1010
||||||||||| |||||| ||||| || |||| ||||||| || ||| ||||||||||||
Sbjct 948 CATGAAACTAGTAAAGGAGAGTAAAAATGAAAGACTAACCACTCTTT-TAGAGGAGACAA 1006
Query 1011 ACAAAATCTTTGTTAGTTTGGGGGCTGCAGTCCAGCGTCAGAAAGATGCCAAACTTTCAG 1070
||||| || ||| || |||||| ||||| || || |||||||||||||| |||||| | |
Sbjct 1007 ACAAACTCCTTGCTAATTTGGGAGCTGCTGTTCAACGTCAGAAAGATGCTAAACTTCCGG 1066
Query 1071 AAAACACCAAAT-TACTGAAAGGCTCAGAATCTGACTTATCTG-A--TG-T--T----G- 1118
|| || || | || |||| ||||||||||||||| |||| | || | | |
Sbjct 1067 AAGGCA-TTGATCTTCTTAAAGACTCAGAATCTGACTTGTCTGAACTTGATGGTCCAAGA 1125
Query 1119 A-TGCTCC--TG-AGGATGTGCTTCCTGCCCAAGATATTGAGATCATTGACTCTGACAAT 1174
| || || || ||||| ||||||||| || |||||||| || | ||| |||||||||
Sbjct 1126 AGTGAACCATTGCAGGATCTGCTTCCTGATCAGGATATTGATATTACTGAGTCTGACAAT 1185
Query 1175 AATGATGATTCTAATGACTTACTAGAAGG-CGAGAGGCAGTTTAACT-TGGCTATCCATT 1232
|| ||||| |||||||| ||||||||||| | ||||||||| ||||| | ||||||||||
Sbjct 1186 AACGATGACTCTAATGATTTACTAGAAGGAC-AGAGGCAGTATAACTCT-GCTATCCATT 1243
Query 1233 CCATACAAGAGAAGGTGACAAAGCAGCCATCCCTTCTACAAGGTGGGGAACTAAGATCCT 1292
| ||||||||||||||||| ||||||| || |||||| |||||||||||||| ||||||
Sbjct 1244 CAATACAAGAGAAGGTGACGGAGCAGCCCTCACTTCTAGAAGGTGGGGAACTACGATCCT 1303
Query 1293 ATCAATTAGAAGGACTTCAATGGATGGTCTCTCTATACAACAATGA-CTATAATGGCATT 1351
||||||||||||| || ||||||||||| ||||||| ||||||| | || ||||| |||
Sbjct 1304 ATCAATTAGAAGGGCTCCAATGGATGGTTTCTCTATTCAACAATAACCT-CAATGGAATT 1362
Query 1352 TTAGCTGATGAAATGGGTTTAGGAAAGACTATCCAAACGATTGCACTGATTGCGTATCTT 1411
|||||||| || |||||||| ||||| ||||| ||||| ||| | |||||||||||||||
Sbjct 1363 TTAGCTGACGAGATGGGTTTGGGAAAAACTATTCAAACTATTTCTCTGATTGCGTATCTT 1422
Query 1412 CTTGAGAGTAAAGATCTTCATGGGCCTCATCTAATA-TTGGCTCCAAAAGCTGTGCTACC 1470
|| |||| ||||| | | | ||||||| |||| ||| || ||||||||||||||||||||
Sbjct 1423 CTGGAGAATAAAGGTGTGCCTGGGCCTTATCTTATAGTT-GCTCCAAAAGCTGTGCTACC 1481
Query 1471 AAATTGGGAAAATGAGTTTGCATTATGGGCACCCAGCATTTCCGCTTTTCTTTACGATGG 1530
|||||||| ||| ||||||||| ||||| ||| |||||| | ||||||||||| |||||
Sbjct 1482 AAATTGGGTAAACGAGTTTGCAACATGGGTACCAAGCATTGCAGCTTTTCTTTATGATGG 1541
Query 1531 ATC--AAAGGAGAAAAGAACTGAAATAAGAGCAAGAATAGCA-G-G-AGGAAAATTTAAT 1585
| | | ||| |||||| | |||||| | || ||| ||| | | |||||||||||||
Sbjct 1542 A-CGTTTA-GAGGAAAGAAAAGCAATAAGGGAAAAAATTGCAGGAGAAGGAAAATTTAAT 1599
Query 1586 GTGTTGATAACCCACTACGATCTTATCATGAGAGATAAAGCATTTTTGAAGAAAATTGAC 1645
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1600 GTGTTGATAACCCATTATGATCTTATCATGAGAGATAAAGCATTTTTGAAGAAAATTGAG 1659
Query 1646 TGGAACTACATGATTGTTGATGAAGGACATCGTCTGAAGAACCATGAATGTGCTCTCGCA 1705
||| |||||||||||||||||||||||||||| |||||||||||||||| |||||| |||
Sbjct 1660 TGGTACTACATGATTGTTGATGAAGGACATCGGCTGAAGAACCATGAATCTGCTCTAGCA 1719
Query 1706 AAGACTCTAGGAACTGGCTACCGGATTAAGCGCAGACTTCTATTAACTGGAACTCCCATA 1765
|||||||||| ||| ||||| || || || ||||||||||| ||||| || || ||||||
Sbjct 1720 AAGACTCTAGTAACAGGCTATCGTATAAAACGCAGACTTCTGTTAACCGGGACACCCATA 1779
Query 1766 CAGAACAGTCTGCAAGAACTATGGTCGCTGCTTAATTTTCTTCTTCCTCACATCTTTAAC 1825
||||| || || |||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 1780 CAGAATAGCCTTCAAGAACTATGGTCATTGCTTAATTTTCTCCTTCCTCACATCTTTAAC 1839
Query 1826 TCAATTCATAATTTCGAAGAATGGTTTAATACTCCATTCGCAGAATGTGGTAGTGCCAGT 1885
||| |||| || ||||| |||||||||||| | || ||||| || |||||| || ||||
Sbjct 1840 TCAGTTCAAAACTTCGAGGAATGGTTTAATGCGCCTTTCGCTGACCGTGGTAATGTCAGT 1899
Query 1886 CTTACAGATGAAGAGGAGCTGTTGATTATTAACCGTCTGCATCATGTCATAAGGCCGTTT 1945
||||| |||||||||||||| |||||||| |||||||||||||||| ||||||||||||
Sbjct 1900 CTTACGGATGAAGAGGAGCTCTTGATTATCCACCGTCTGCATCATGTTATAAGGCCGTTT 1959
Query 1946 CTACTGAGAAGGaaaaaaaG-TGAGGTTGAGAAATTCCTTCCTGGAAAGACACAAGTCAT 2004
||||||||| ||||||| | || || |||||||||||||||||||||||||| |||||
Sbjct 1960 ATACTGAGAA-GAAAAAAGGACGAAGTAGAGAAATTCCTTCCTGGAAAGACACAGGTCAT 2018
Query 2005 ACTGAAGTGTGATATGTCGGCTTGGCAAAAATTGTATTACAAACAAGTTACAGACGTAGG 2064
| ||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| | ||
Sbjct 2019 ATTGAAGTGTGATATGTCGGCATGGCAGAAAGTGTATTACAAACAAGTTACAGACATGGG 2078
Query 2065 CAGGGTCGGTCTTCATTCTGGCA-ATGGGAAATCAAAGAGTCTGCAGAATCTGACAATGC 2123
|||||| || ||||| | || | ||||||||||||||||||||| ||||| || ||||
Sbjct 2079 CAGGGTTGGCCTTCAAACAGG-ATCTGGGAAATCAAAGAGTCTGCAAAATCTAACGATGC 2137
Query 2124 AATTAAGAAAGTGTTGTAACCATCCGTACCTATTCGTTGGAGCAGATTATAACATGTGTA 2183
||||||||||||||||||||||||| || ||||| ||||||| ||| || || ||||| |
Sbjct 2138 AATTAAGAAAGTGTTGTAACCATCCCTATCTATTTGTTGGAGGAGACTACAATATGTGGA 2197
Query 2184 AGAAGCCTGAGATTGTGAGAGCTTCAGGAAAATTCGAGTTACTTGATCGCCTCCTTCCAA 2243
|||| ||||||||||||||||||||||| ||||| || | |||||||| ||||||||||
Sbjct 2198 AGAAACCTGAGATTGTGAGAGCTTCAGGGAAATTTGAACTCCTTGATCGTCTCCTTCCAA 2257
Query 2244 AACTGAAG-AAAGCTGGACATAGAATTCTGCTCTTTTCTCAAATGACTCGTCTCATTGAC 2302
||||| | || ||||||||||| ||||| ||||| || |||||||| ||||||||||||
Sbjct 2258 AACTG-CGCAAGGCTGGACATAGGATTCTTCTCTTCTCCCAAATGACCCGTCTCATTGAC 2316
Query 2303 CTTCTCGAAATTTACTTGTCACTCAATGACTACATGTACCTCAGACTTGACGGTAGCACA 2362
|||| || || |||||| |||| ||||| |||| ||||| ||||| || |||| ||||
Sbjct 2317 GTTCTTGAGATATACTTGACACTTAATGATTACAAATACCTTAGACTCGATGGTACCACA 2376
Query 2363 AAGACAGACCAAAGAGGGATTTTACTGAAGCAATTCAACGAACCGGACTCTCCCTACTTT 2422
|||||||| ||||||||| |||||||||||||||||||||| || || ||||||||||||
Sbjct 2377 AAGACAGATCAAAGAGGGCTTTTACTGAAGCAATTCAACGAGCCAGATTCTCCCTACTTT 2436
Query 2423 ATGTTTCTTCTGAGCACACGTGCTGGTGGTCTTGGTTTGAACTTACAAACTGCAGACACT 2482
||||||||| ||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct 2437 ATGTTTCTTTTGAGCACACGTGCCGGAGGTCTTGGTTTGAACTTGCAAACTGCAGACACT 2496
Query 2483 ATAATTATATTTGACAGTGATTGGAATCCACAAATGGACCAGCAAGCAGAGGATCGTGCT 2542
| ||||| ||||||||||||||||| |||||||||||||| || || |||||||| ||
Sbjct 2497 GTTATTATCTTTGACAGTGATTGGAACCCACAAATGGACCAACAGGCCGAGGATCGAGCG 2556
Query 2543 CATCGGATAGGGCAGAAAAAGGAAGTGAGAGTTTTTGTTTTGGTTAGCATTGGATCCATT 2602
||||| ||||||||||| |||||||| ||||| ||||||||||||||| |||| ||||||
Sbjct 2557 CATCGCATAGGGCAGAAGAAGGAAGTCAGAGTGTTTGTTTTGGTTAGCGTTGGCTCCATT 2616
Query 2603 GAAGAAGTAATATTGGAGCGTGCAAAGCAAAAGATGGGCATCGATGCGAAAGTCATACAA 2662
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 2617 GAAGAAGTAATATTGGAGCGTGCAAAGCAAAAGATGGGCATTGACGCCAAAGTCATACAA 2676
Query 2663 GCAGGGCTCTTCAACACAACTTCTACTGCTCAAGACAGGAGAGAGATGCTGGAAGAGATC 2722
|| || || |||||||||||||| ||||| |||||| | ||||||||||| ||||||||
Sbjct 2677 GCTGGACTTTTCAACACAACTTCCACTGCACAAGACCGAAGAGAGATGCTTGAAGAGATT 2736
Query 2723 ATGAGCAAAGGAACAAGCTCACT-GGGAGAAGATGTGCCAAGTGAGAGAGAGATTAACCG 2781
||| |||||||||||||||| || |||| | ||||| || ||||||||||| || || ||
Sbjct 2737 ATGCGCAAAGGAACAAGCTCGCTTGGGACA-GATGTCCCCAGTGAGAGAGAAATAAATCG 2795
Query 2782 GCTCGCAGCTCGAACTGAGGAAGAGTTTTGGATGTTTGAACAAATGGACGAGGAAAGACG 2841
|||||| ||||| | |||||| || |||||||||||||| | |||||| ||||| |||||
Sbjct 2796 GCTCGCGGCTCGTAGTGAGGATGAATTTTGGATGTTTGAGCGAATGGATGAGGAGAGACG 2855
Query 2842 TAAA-AAGGAGAACTACA-AGACACGTCTCATGGAAGAGAAGGAAGTTCCC-GAGTGGGC 2898
|| |||||||| |||| || | ||||| ||| ||||| ||||||| ||| ||||||||
Sbjct 2856 -AAGGAAGGAGAATTACAGAGCC-CGTCTGATGCAAGAGCAGGAAGT-CCCTGAGTGGGC 2912
Query 2899 TTACACT--TCAGAGACTCAAGAAGACAAGACT-AAC-GCGAAAAAC-CA-TTTTGGTAG 2952
|||||| |||||| | ||||| || ||| | ||| ||| ||| || |||||| ||
Sbjct 2913 GTACACTACTCAGAG-C-CAAGATGAGAAGT-TGAACAGCGGAAAGTTCAATTTTGGGAG 2969
Query 2953 CCTCACGGGTAAACGGAAACGAAAAGA-AGCAGTGTATAGCGACTCTTTAAGCGATTTGC 3011
|||| ||||| || ||||| ||||| | | || || || ||| | ||||||| || |
Sbjct 2970 TGTCACAGGTAAGCGAAAACGTAAAGAGATC-GTTTACAGTGACACACTAAGCGAGTTAC 3028
Query 3012 AGTGGATGAAAGC-GATGGAGAG 3033
||||| ||||||| | |||||||
Sbjct 3029 AGTGGCTGAAAGCCG-TGGAGAG 3050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125399703035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5