BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19315.1
Length=243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326329 jgi|Araly1|326329|fgenesh1_pm.C_scaffold_6001549 364 1e-100
> Ahg326329 jgi|Araly1|326329|fgenesh1_pm.C_scaffold_6001549
Length=240
Score = 364 bits (197), Expect = 1e-100
Identities = 227/241 (94%), Gaps = 3/241 (1%)
Strand=Plus/Plus
Query 1 ATGACCACCACCATGAAAATAATGTCTTTTGCTATGCTACTTGTTCTTTTGTTCTCTATT 60
|||||||||||| ||||||| |||| ||||||||||||| |||||||| |||||||||||
Sbjct 1 ATGACCACCACCGTGAAAATCATGTTTTTTGCTATGCTAATTGTTCTTCTGTTCTCTATT 60
Query 61 GATGTCGTTGAAGGATCCGGAAGTTCGTTGTGCTGTAACACACATGCGAAATTTGGAGCT 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 GATGTCGTTGAAGGATCCGGAAATTCGTTGTGCTGTAACACACATGCGAAATTTGGAGCT 120
Query 121 TGCAACACATACCAAGACAGAAAGAGATGCAACAAATGGTGTCTTGATGGATGTGATAAT 180
||||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 TGCAAAACGTACCAAGACAGAAAGAGATGCAACAAATGGTGTCGTGATGGATGTGATAAT 180
Query 181 AAGAAAGGCGGTTTTTGCAAACGTTTTGCTGGTGGAGCaaaaaaaTGCCATTGTTACTGT 240
||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 181 AAGAAAGGCGGGTTTTGCAAACGTGTTGCTGGTGGAGCAAAA---TGCCATTGTTACTGT 237
Query 241 T 241
|
Sbjct 238 T 238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8401417420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5