BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19320.1
Length=2009
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941479 jgi|Araly1|941479|scaffold_602023.1 2527 0.0
> Ahg941479 jgi|Araly1|941479|scaffold_602023.1
Length=1675
Score = 2527 bits (1368), Expect = 0.0
Identities = 1578/1679 (94%), Gaps = 16/1679 (1%)
Strand=Plus/Plus
Query 157 TCTGGATTTGCGATAATGGCTGATATACTTGATTCTCGACCTCATGCATTTTCGATTAAA 216
|||||||||| ||| |||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 8 TCTGGATTTGTGATTATGGCTGATACACTTGATTCCCGACCTCATGCATTTTCGATTAAA 67
Query 217 CTCTGGCCACCGAGTTTACCTACAAGAAAAGCTCTCATTGAGCGTATAACCAACAATTTT 276
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
Sbjct 68 CTCTGGCCACCGAGTTTACCTACAAGAAAAGCTCTCATTGAGCGCATTACCAACAATCTC 127
Query 277 TCTTCCAAGACTATTTTCACTGAGAAGTACGGTAGCTTAACCAAAGACCAGGCTACGGAG 336
|||| ||||| ||||| ||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 128 TCTTTAAAGACCATTTTTACTGAAAAGTACGGTAGCTTAACCAAAGACCAGGCTATGGAG 187
Query 337 AACGCTAAGAGGATCGAAGA-TATTGCTTTTTCCACTGCTAACCAACAGTTTGAGAGGGA 395
| |||||||||||||| || | |||||||||||||||||||||||||||||||||||||
Sbjct 188 GATGCTAAGAGGATCGAGGACT-TTGCTTTTTCCACTGCTAACCAACAGTTTGAGAGGGA 246
Query 396 GCCTGATGGTGATGGTGGTTCAGCTGTACAGCTTTATGCCAAAGAATGCAGTAAGCTTAT 455
|||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 247 ACCTGATGGTGATGGCGGTTCTGCTGTACAGCTTTATGCTAAAGAATGCAGTAAGCTCAT 306
Query 456 CTTAGAAGTTCTCAAGAAAGGACCTGTTGCTAAAGTTGCGGCAAGAGAATTGATTTCTGA 515
||| ||||||||||||||||| || || ||||| | |||||||||||||||||
Sbjct 307 CTTGGAAGTTCTCAAGAAAGG-CC-----CT---GTTGCCACTAGAGAATTGATTTCTGA 357
Query 516 GGA---TTCTGTGTCTCCCCGCGAAACTTTTTTCGATATTTCTAAAGG-TAAACGGGCTT 571
||| ||||| ||||||||| ||| |||||||||||||||||||||| ||| ||||||
Sbjct 358 GGATTCTTCTGCGTCTCCCCGTGAATCTTTTTTCGATATTTCTAAAGGCCAAA-GGGCTT 416
Query 572 TCATTGAGGCTGAGGAAGCTGAGGAGCTTCTCAAACCTTTGAAGGAACCTGGCAATGCCT 631
||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 417 TCATTGAGGCTGACGAGGCTGACGAGCTTCTCAAACCTTTGAAGGAACCTGGCAATGCTT 476
Query 632 ACACTAAGATATGCTTTAGTAATAGGAGTTTTGGCTTGGGAGCTGCTCGTGTCGCTGAGC 691
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 477 ACACTAAGATATGCTTTAGCAATAGGAGTTTCGGCTTAGGAGCTGCTCGTGTCGCTGAGC 536
Query 692 CTATCTTGGCGTCTTTGAAAGATCAGCTTAAGGAAGTTGACTTGTCTGACTTTGTTGCTG 751
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 537 CTATCTTGGCGTCTCTGAAAGATCAGCTTAAGGAAGTTGACTTGTCCGACTTTGTTGCTG 596
Query 752 GACGACCTGAGCTTGAAGCTCTTGAGGTTATGAATATATTTTCTGACGCACTGCAAGGTA 811
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 597 GACGACCCGAGGTTGAAGCTCTTGAGGTTATGAATATATTTTCTGACGCACTGCAGGGTA 656
Query 812 GTATTCTCTCGTCTCTCAACTTATCAGATAATGCATTGGGTGAGAAGGGTGTTAGAGCGT 871
|||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 657 GTATTCTCTCCTCTCTCAACTTATCTGAGAATGCATTGGGTGAGAAGGGTGTTAGAGCAT 716
Query 872 TTGGGGCACTCTTAAAATCTCTGAGCTCTTTGGAAGAGCTGTATTTGATGAATGATGGTA 931
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 717 TTGGGGCACTCTTAAAATCTCTGAGCTCTTTGGAAGAGCTGTATTTGATGAACGATGGTA 776
Query 932 TCTCTAAGGAAGCTGCGCAAGCGGTCTCCGAGTTGATTCCTTCAACAGAGAATTTGAGGG 991
|||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 777 TCTCTAAGGAAGCTGCACAAGCGGTCTCTGAGTTGATTCCTTCAACAGATAATTTGAGGG 836
Query 992 TCCTTCATTTTCATAATAACATGACGGGAGATGAAGGGGCACTCGCTATTGCAGAGGTTG 1051
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 837 TCCTTCATTTTCATAATAACATGACGGGAGATGAAGGGGCACTCGCAATTGCAGAGGTTG 896
Query 1052 TCAAGCGTTCCCCACTGCTGGAGAATTTCCGTTGTTCTTCCACAAGAGTCGGCTCAAAAG 1111
|||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 897 TCAAGCGTTCGCCACTGCTGGAGAATTTCCGGTGTTCTTCCACAAGAGTCGGCTCAGAAG 956
Query 1112 GGGGAATCGCCTTGTCAGAAGCACTTGAGCATTGTACTCATATGGAGAAACTTGATCTGC 1171
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 957 GGGGAATCGCCTTATCAGAAGCACTTGAGCATTGTACTCATATGGAGAAACTTGATGTGC 1016
Query 1172 GGGATAATATGTTTGGCACAGAAGCCGGAGTTTCTTTGAGCAAAACTCTTTCAAGCTTCA 1231
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1017 GGGATAATATGTTTGGCACAGAAGCCGGAGTTTCTCTGAGCAAAACTTTTTCAAGCTTCA 1076
Query 1232 AACACATGACTGAGCTTTACTTGAGTTATCTAAATCTAGAGGATGAAGGTGCCATAGCCA 1291
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1077 AACACTTGACTGAGCTTTACTTGAGTTATCTTAATCTAGAGGATGAAGGTGCCATAGCCA 1136
Query 1292 TAGTAAACGCTCTAAAGGAGTCTGCTTCGCCCATTGAAGTTCTAGAGATGGCAGGAAATG 1351
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1137 TAGTAAACGCTCTAAAGGAGTCTGCTTCACCCATTGAAGTTCTAGAGATGGCAGGAAATG 1196
Query 1352 ACATAACAGTTGAAGCTGCTTCAGCTATCGCAGCCTGTGTTGCAGCAAAACAAGATCTGA 1411
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1197 ACATAACAGTTGAAGCTGCTTCAGCTATCGCAGCCTGTGTAGCAGCAAAACAAGATCTGA 1256
Query 1412 ACAAGTTGAATTTGTCTGAGAATGAGCTGAAAGATGAGGGATGTGTCCAGATTGCAAATT 1471
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 AAAAGTTGAATTTGTCTGAGAATGAGCTGAAAGATGAGGGATGTGTCCAGATTGCAAAGA 1316
Query 1472 GTATAGAAGAGGGTCACTCAAAACTGCAATACATCGATATGAGCACCAACTACATAAGAA 1531
|||| || |||| ||| || ||| |||||||||||||||||||||| || ||||||||||
Sbjct 1317 GTATGGAGGAGGATCATTCGAAATTGCAATACATCGATATGAGCACGAATTACATAAGAA 1376
Query 1532 GAGCCGGAGCACGAGCCTTGGCTCATGTTGTTGTGAAGAAAGAAGCTTTCAAGCTGTTGA 1591
||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1377 GAGCCGGAGCACGGGCCTTGGCTCATCTTGTTGTTAAGAAAGAAGCTTTCAAGCTGTTGA 1436
Query 1592 ACATTGACGGGAACATCATATCAGAAGAAGGCATTGAAGAATTGAAAGAGATATTCAAGA 1651
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1437 ACATCGACGGGAACATCATATCAGAAGAAGGCATTGAAGAATTGAAAGAGATATTCAAGA 1496
Query 1652 AATCCCCAGAGTTACTTGGAGCTTTGgatgagaatgatcctgatggagaagaagatgatg 1711
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 1497 AATCTCCAGAATTACTTGGAGCTTTGGACGAGAATGATCCTGATGGAGAAGAAGAAGAAG 1556
Query 1712 atgatgaggaagacgaagaagatgaagagaacgaagGTAATGGGAATGGTGAGCTGGAAT 1771
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1557 ATGATGAGGAAGACGAAGAAGATGAAGAGAACGAAGGTAACGGAAATGGTGAGCTGGAAT 1616
Query 1772 CGAAGCTGAAGAACCTTGAAGTTAATCAGGAAGATTAAGTCTGTGATGTTGGTACTTTT 1830
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 CAAAGCTGAAGAACCTTGAAGTTAATCAGGAAGATTAAGTCTGTGATGTTGGTACTTTT 1675
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75532955835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5