BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19330.1
Length=2491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488817 jgi|Araly1|488817|fgenesh2_kg.6__1951__AT5G19330.1 3792 0.0
Ahg317462 jgi|Araly1|317462|fgenesh1_pm.C_scaffold_3000478 1626 0.0
> Ahg488817 jgi|Araly1|488817|fgenesh2_kg.6__1951__AT5G19330.1
Length=2331
Score = 3792 bits (2053), Expect = 0.0
Identities = 2259/2355 (96%), Gaps = 27/2355 (1%)
Strand=Plus/Plus
Query 1 cttcttcttcttctctgatctctcctcttcttcGGATCGTCTTTTACTTTGTGAACGATG 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTCTGCTTCTTCTCTGATCTCTCCTCTTCTTCGGATCGTCTTTTACTTTGTGAACGATG 60
Query 61 GACCAACAACCGGAGAGGCGAGAAGGCCGGAGTTTTCCGGAGCGTAAAGGACAGAAGCGG 120
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 GAGCAACAACCGGAGAGGCGAGAAGGCCGGAGTTTCCCGGAGCGTAAAGGACAGAAGCGA 120
Query 121 AAGCTAGAGGAAGGAGCCGCCGCCGTAGAAGATCGAGAGATCTCTGCCGTCAGCACCGAC 180
|||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||
Sbjct 121 AAGCTAGAGGAAGGAGTAGCCGCCGTAGAAGATCGACAGATCTCTGCCGTCACCACCGAC 180
Query 181 GGAGGCCAAGCGCTTCTTAGCGAGGTTGCTGCTCAAGTCTCGGTACTAAACTCTGCCTTC 240
||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 181 GGAGGCCAAGCGCTTCTCAGCGAGGTTGCTGCTCAAGTTTCGGTTCTAAACTCTGCCTTC 240
Query 241 TCTTGGCAAGAGTCCGATCGCGCTGCTGCCAAGCGAGCCACTCAAGTTCTGGCTGAGCTA 300
||||||||||| || |||||||||||| | ||||| || |||||||| ||||||||||||
Sbjct 241 TCTTGGCAAGAATCGGATCGCGCTGCTTCTAAGCGCGCAACTCAAGTCCTGGCTGAGCTA 300
Query 301 GCCAAAAACGAGGATTTAGTGAACGTGATTGTCGACGGAGGTGCTGTTCCAGCTCTTATG 360
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 301 GCTAAAAACGAGGATTTAGTTAACGTGATTGTCGACGGAGGTGCTGTTCCAGCTCTCATG 360
Query 361 ACGCATCTACAGGCGCCACCATACAACGACGGGGACTTGGCTGAGAAGCCGTACGAACAC 420
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACGCATCTACAGGCGCCGCCGTACAACGACGGGGACTTGGCTGAGAAGCCGTACGAACAC 420
Query 421 GAAGTTGAGAAGGGAAGCGCTTTTGCGCTTGGTCTTCTTGCTATTAAGCCAGAGTATCAG 480
|| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 421 GAGGTTGAGAAGGGAAGCGCTTTTGCGCTTGGTCTTCTAGCAATTAAGCCAGAGTATCAG 480
Query 481 AAACTGATAGTAGACAAAGGTGCCTTACCTCATTTAGTGAATTTGTTGAAGAGAAACAAA 540
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 481 AAACTGATAGTAGACAAAGGTGCCTTACCTCATCTAGTGAATCTGTTGAAGAGAAACAAA 540
Query 541 GATGGTTCTAGCTCTCGAGCTGTGAATAGTGTTATCAGAAGAGCGGCTGATGCCATCACC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GATGGTTCTAGCTCTCGAGCTGTGAATAGTGTTATCAGAAGAGCGGCTGATGCCATCACC 600
Query 601 AATCTTGCTCATGAGAACAGCAGTATCAAGACCCGTGTTAGGGTAGAAGGCGGTATTCCA 660
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 601 AATCTTGCTCATGAGAACAGCAGTATCAAGACCCGTGTTAGGGTAGAAGGTGGCATTCCA 660
Query 661 CCTCTCGTGGAGTTGCTTGAATTTTCTGATTCAAAGGTCCAGAGAGCAGCAGCAGGGGCA 720
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 661 CCTCTCGTGGAGTTGCTTGAATTTTCTGATTCAAAGGTTCAGAGAGCAGCAGCAGGGGCA 720
Query 721 TTGAGAACCCTTGCATTTAAAAATGATGATAACAAGAATCAGATAGTTGAATGCAATGCT 780
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 721 CTGAGAACCCTTGCATTTAAAAATGATGATAACAAGAACCAGATAGTTGAATGCAATGCT 780
Query 781 CTTCCCACACTTATTCTAATGCTAGGATCAGAGGATGCTGCTATACATTATGAAGCGGTT 840
|||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 781 CTTCCCACTCTCATTCTAATGCTAGGATCAGAAGATGCTGCTATACATTATGAAGCGGTT 840
Query 841 GGAGTTATAGGCAATCTAGTACACTCGTCTCCACACATTAAAAAAGAGGTTCTTACTGCC 900
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 841 GGAGTTATTGGCAATCTAGTACACTCGTCTCCACACATTAAAAAAGAGGTTCTTGCTGCC 900
Query 901 GGGGCGTTGCAACCTGTCATTGGTCTTCTTAGCTCCTGTTGCCCTGAGAGTCAAAGAGAG 960
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 901 GGGGCGTTGCAACCTGTCATTGGTCTTCTTAGCTCCTGTTGCCCTGAGAGCCAAAGAGAG 960
Query 961 GCGGCTTTATTACTTGGGCAGTTTGCCTCAACTGATTCTGATTGTAAGGTGCACATTGTG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GCGGCTTTATTACTTGGGCAGTTTGCCTCAACTGATTCTGATTGTAAGGTGCACATTGTG 1020
Query 1021 CAAAGGGGTGCTGTCCGTCCTTTAATTGAGATGCTTCAGTCCCCGGATGTCCAGTTGAAG 1080
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1021 CAAAGGGGTGCTGTCCGTCCTTTGATTGAGATGCTTCAGTCACCGGATGTCCAGTTGAAG 1080
Query 1081 GAAATGTCGGCCTTTGCACTGGGTAGATTGGCACAGGATGCCCACAATCAAGCTGGTATT 1140
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1081 GAAATGTCGGCCTTTGCACTGGGTAGATTGGCGCAGGATGCCCACAATCAAGCTGGTATT 1140
Query 1141 GCCCATAGTGGTGGTTTAGGACCTTTATTGAAGCTTCTCGATTCAAGAAATGGATCATTG 1200
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GCCCATAGTGGTGGCTTAGGACCTTTATTGAAGCTTCTCGATTCAAGAAATGGATCATTG 1200
Query 1201 CAACACAATGCTGCATTTGCTCTTTATGGCCTTGCCGATAATGAGGATAATGTGTCAGAT 1260
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1201 CAACACAATGCTGCATTTGCTCTTTATGGCCTTGCCGATAATGAGGATAATGTGTCGGAT 1260
Query 1261 TTTATCAGGGTGGGAGGTATCCAAAAGCTACAGGATGGAGAGTTTATTGTTCAAGCAACT 1320
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1261 TTTATCAGGGTGGGAGGTATCCAAAAGCTACAAGATGGAGAGTTTATTGTTCAAGCAACT 1320
Query 1321 AAAGATTGTGTTTCCAAAACACTAAAGAGATTGGAGGAGAAGATTCATGGAAGAGTTCTG 1380
||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1321 AAAGATTGTGTCTCCAAAACACTGAAGAGATTGGAGGAGAAAATTCATGGAAGAGTTCTG 1380
Query 1381 AGACATCTGTTGTACCTAATGCGCATTTCAGAGAAGTCTATCCAAAGACGAGTTGCTCTT 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 AGACATCTGTTGTACCTAATGCGCATTTCAGAGAAGTCTATCCAAAGACGAGTTGCTCTT 1440
Query 1441 GCCCTTGCTCATCTCTGTTCACCCGAGGATCA-ACGAACCATATTCATAGATGACAACGG 1499
|| ||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||
Sbjct 1441 GCTCTTGCTCATCTCTGTTCACCCGAGGATCAGA-GAACCATATTCATAGATGACAATGG 1499
Query 1500 GTTGGAGTTGCTACTCGGTCTTCTTGGTTCTTTAAACACTAAGCAGCAACTTGACGGTGC 1559
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1500 GTTGGAGTTGCTACTCGGTCTTCTTGGTTCTTTAAACACTAAGCAGCAACTTGATGGTGC 1559
Query 1560 AGCAGCGTTGTACAAATTAGCAAATAAATCTATGGCACTTTCTCCAGTTGATGCTGCTCC 1619
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1560 GGCAGCGTTGTACAAATTAGCAAGTAAATCTATGGCACTTTCTCCAGTTGATGCTGCTCC 1619
Query 1620 TCCTTCTCCAACACAAAGGGTTTATCTCGGAGAGCAATATGTAAATAATGCTACGCTGTC 1679
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1620 TCCTTCCCCAACACAAAGGGTTTATCTTGGAGAGCAATATGTAAATAATGCTACGCTGTC 1679
Query 1680 TGATGTAACCTTTCTAGTCGAAGGAAGGACATTCTATGCACACAGAATTTGTCTGCTGGC 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 TGATGTAACCTTTCTAGTCGAAGGAAGGACATTCTATGCACACAGAATTTGTCTGCTGGC 1739
Query 1740 ATCCTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTACAGAGAAAAAGACGCTAGAGA 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 ATCCTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTACAGAGAAAAAGACGCTAGAGA 1799
Query 1800 TATTGAGATTCCAAATATCAAATGGGAGGTGTTTGAGTTAATGATGAGGTTTATATACAC 1859
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 TATTGAGATTCCGAATATCAAATGGGAGGTGTTTGAGTTAATGATGAGGTTTATATACAC 1859
Query 1860 TGGATCTGTCGACATAACAAATGAGATATCAAAAGATCTTCTAAGAGCAGCGGATCAGTA 1919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1860 TGGATCTGTCGACATAACAAATGAGATATCAAAAGATCTTCTAAGAGCAGCGGATCAGTA 1919
Query 1920 TCTCTTGGAGGGCCTGAAACGACTCTGTGAATACACAATTGCTCAGGATATTACGTTGGA 1979
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1920 TCTCTTGGAGGGCCTGAAACGACTCTGTGAATACACAATTGCTCAGGATATAACATTGGA 1979
Query 1980 AAGTATAGGAGACATGTACGAGCTATCAGAAGCATTCCATGCGATGTCGCTGAGGCAAGC 2039
||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1980 AAGCATAGGAGACATGTACGAGCTCTCAGAAGCATTCCATGCAATGTCGCTGAGGCAAGC 2039
Query 2040 TTGTATCATGTTCATCCTGGAGCATTTCGATAAACTGAGTTCAATGCCTTGGCAGAACGA 2099
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2040 TTGTATCTTGTTCATCCTGGAGCATTTCGATAAACTGAGTTCAATGCCTTGGCAGAAGGA 2099
Query 2100 GCTGGTGCAGAGAACAATACCAGAGATAAGAGAGTACTTTTGTAGAGCCCTAACAAAGTC 2159
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2100 GCTGGTGCAGAGAACAATACCAGAGATAAGAGAGTACTTTTGTAGAGCTCTAACAAAGTC 2159
Query 2160 TACTACAAACCTGCAAAGCTTGAGGTTGTAGAATGCGGAAGAAGAAGACTGCACTTAACT 2219
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 2160 TACTACAAACCTGCAAAGCTTGAGGCTGTAGAATGTGGAAGAAGAAGACTGCACTTAACT 2219
Query 2220 AGAGGTAAGTAGACAAGGAATTATATagagagaaagagagagagagaTCAAGAGCCGCCA 2279
|||||||||||||||||||| | |||||| |||||||||||||
Sbjct 2220 AGAGGTAAGTAGACAAGGAA--A----GAGAGA--------------TCAAGAGCCGCCA 2259
Query 2280 TTAGAGGTCTTTATCGTCCTGTACTGG-GTTGTCT-TAGTTATTTGCTGTGCTTTTTGGT 2337
|||||||||||||| ||| ||| || | ||||| | |||||||||||||||||||| |||
Sbjct 2260 TTAGAGGTCTTTATGGTCATGT-CTTGAGTTGT-TATAGTTATTTGCTGTGCTTTT-GGT 2316
Query 2338 TCGTTTTGGTCATTT 2352
|||||||||||||||
Sbjct 2317 TCGTTTTGGTCATTT 2331
> Ahg317462 jgi|Araly1|317462|fgenesh1_pm.C_scaffold_3000478
Length=2067
Score = 1626 bits (880), Expect = 0.0
Identities = 1737/2138 (81%), Gaps = 110/2138 (5%)
Strand=Plus/Plus
Query 58 ATGGACCAACAACCGGAGAGGCGAGAAGGCCGGAGTTTTCCGGAGCGTAAAGGACAGAAG 117
||||| ||||||||||| | || ||| | |||||| || |||||||| ||||||||||||
Sbjct 1 ATGGAGCAACAACCGGAAAAGCTAGACGACCGGAGCTTCCCGGAGCGCAAAGGACAGAAG 60
Query 118 CGGAAGCTAGAGGAAGGAGCCGCCGCCGTAGAAGATCGAGAGATCTCTGCCGTCAG-CAC 176
| || || |||| || | | ||| || || |||||||| || || || |||
Sbjct 61 AGAAAACT---GGAA-GA-----AG--G-AGATGAGCGGGAGATCTCCGCTGT-AGCCAC 107
Query 177 CGACGGAGGCCAAGCGCTTCTTAGCGAGGTTGCTGCTCAAGTCTCGGTACTAAACTCTGC 236
|||||||||| | ||||| || | | ||| || ||||||| || ||||| | ||| |
Sbjct 108 CGACGGAGGCGAGGCGCTCCTCCGAGTGGTCGCCACTCAAGTATCCGTACTGAGCTCCAC 167
Query 237 CTTCTCTTGGCAAG-AGTCCGATCGCGCTGCTGCCAAGCGAGCCACT-CAAGTTCTGGCT 294
||||| ||| ||| || |||||||| | || || || || |||| | ||| |||| |||
Sbjct 168 TTTCTCCTGGAAAGAAG-CCGATCGCACCGCCGCAAAACGCGCCA-TCCAAATTCTAGCT 225
Query 295 GAGCTAGCCAAAAACGAGGATTTAG-TGAACGTGATTGTCGACGGAGGTGCTGTTCCAG- 352
||||| ||||||||||| ||||| | || ||||||||||||| ||||| ||||||||||
Sbjct 226 GAGCTCGCCAAAAACGAAGATTTTGTTG-ACGTGATTGTCGAGGGAGGGGCTGTTCCAGT 284
Query 353 -CTCTTATGACGCATCTACAGGCGCCACCATACAACGACGGGGACTTGGCTGAGAAGCCG 411
||| | ||| |||||||||||| || || ||| || |||| | | || | || ||
Sbjct 285 TCTCGT-TGA-GCATCTACAGGCTCCGCCGTACGGTGATGGGG-C-T--CT-A-AAACCA 336
Query 412 TACGAACACGAAGTTGAGAAGGGAAGCGCTTTTGCGCTTGGTCT-TCTTGCTATTAAGCC 470
| ||||| || || ||||| ||||| || |||| |||||| | ||| || || |||||
Sbjct 337 TTGGAACATGAGGTAGAGAAAGGAAGTGCGCTTGCTCTTGGT-TATCTCGCGATCAAGCC 395
Query 471 AGAGTATCAGAAACTGATAGTAGACAAAGGTGCCTTACCTCAT-TTAGTGAATTTGTTGA 529
|||| | ||||| || ||| | ||| | ||||| || || ||| || |||||| | ||||
Sbjct 396 AGAGCACCAGAAGCTAATAATTGACTATGGTGCATTGCCCCATCTT-GTGAATCTATTGA 454
Query 530 AGAGAAACAAAGATGGTTCTAGCTCTCGAGCTGTGAATAGTGTTATCAGAAGAGCGGCTG 589
||||||||||| |||||||||| | | || | || |||| ||||||| |||||||
Sbjct 455 AGAGAAACAAAAATGGTTCTAG-T-T----CT-CG-AT-CTGTTCTCAGAAGGGCGGCTG 505
Query 590 ATGCCATCACCAATCTTGCTCATGAGAACAGCAGTATCAAGACCCGTGTTAGGGTAGAAG 649
|||| |||| ||||||||| |||||||| | || |||||| | || ||||||| ||||||
Sbjct 506 ATGCTATCATCAATCTTGCCCATGAGAATAACACTATCAAAAACCTTGTTAGGTTAGAAG 565
Query 650 GCGGTATTCCACCTCTCGTGGAGTTGCTTGAATTTTCTGATTCAAAGGTCCAGAGAGCAG 709
| |||||||| ||||| |||||||||||||||||| |||| ||||| || ||| ||||||
Sbjct 566 GAGGTATTCCGCCTCTTGTGGAGTTGCTTGAATTTGCTGACTCAAAAGTTCAGCGAGCAG 625
Query 710 CAGCAGGGGCATTGAGAACCCTTGCATTTAAAAATGATGATAACAAGAATCAGATAGTTG 769
|||||||||||||||||||||| || ||||||||||||| ||||||||| || |||||||
Sbjct 626 CAGCAGGGGCATTGAGAACCCTCGCGTTTAAAAATGATGCTAACAAGAACCAAATAGTTG 685
Query 770 AATGCAATGCTCTTCCCACA-CTT-ATTC-TAATGCTAGGATCAGAGGATGCTGCTATAC 826
| || ||||||||| ||| | || | || || |||||||||||||||| ||| | |||
Sbjct 686 ACTGTAATGCTCTT-CCA-ATGTTGA-TCTTACTGCTAGGATCAGAGGACGCTACGGTAC 742
Query 827 ATTATGAAGCGGTTGGAGTTATAGGCAATCTAGTACACTCGTCTCCACACATTAAAAAAG 886
|||||||||||||||| ||| | |||||||||||||||||||||| | ||||| ||||||
Sbjct 743 ATTATGAAGCGGTTGGTGTTCTTGGCAATCTAGTACACTCGTCTCTAGACATT-AAAAAG 801
Query 887 -AGGTTCTT-ACTGCCGGGGCGTTGCAACCTGTCATTGGTCTTCTTAGCTCCTGTTGCCC 944
| |||||| | |||| |||| ||||| ||||| || ||||||| ||||| ||||||||
Sbjct 802 AAAGTTCTTGA-TGCCAGGGCATTGCAGCCTGTAATCAGTCTTCTCAGCTCTTGTTGCCC 860
Query 945 TGAGAGTCAAAGAGAGGCGGCTTTATTACTTGGGCAGTTTGCCT-CAACTGATTCTGATT 1003
|||||| | |||||||| ||||| ||| |||| || |||| || | ||||||||||||
Sbjct 861 TGAGAGCCGGAGAGAGGCAGCTTTGTTAATTGGCCAATTTG-CTGCTTCTGATTCTGATT 919
Query 1004 GTAAGGTGCACATTGTGCAAAGGGGTGCTGTCCGTCCTTTAATTGAGATGCTTCAGTCCC 1063
| |||| ||||| || |||||||| |||||| ||||||| ||| |||||||| |||| |
Sbjct 920 GCAAGGCACACATAGTACAAAGGGGGGCTGTCTGTCCTTTGATTAAGATGCTTGAGTCAC 979
Query 1064 CGGATGTCCAGTTGAAGGAAATGTCGGCCTTTGCACTGGGTAGATTGGCACAGGATGCCC 1123
| || || |||||||||||||||| |||||||| |||| ||| ||||||||||| |||
Sbjct 980 CAGAAGTTAAGTTGAAGGAAATGTCAGCCTTTGCGTTGGGGAGACTGGCACAGGATTCCC 1039
Query 1124 ACAATCAAGCTGGTATTGCCCAT-AGTGGTGGTTTAGGACCTTTATTGAAGCTTCTCGAT 1182
||||||||||||| ||||| ||| || |||| | |||||||||||||||||||||| ||
Sbjct 1040 ACAATCAAGCTGGCATTGCTCATAAG-GGTGCTCTAGGACCTTTATTGAAGCTTCTAGAA 1098
Query 1183 TCAAG-AAATGGATCAT-TGCAACACAATGCTGCATTTGCTCTTTATGGCCTTGCCGATA 1240
|| || |||| ||| | |||||| ||| |||||||||||||||||||| ||||| ||||
Sbjct 1099 TC-AGAAAATATATC-TCTGCAACGCAAAGCTGCATTTGCTCTTTATGGTCTTGCTGATA 1156
Query 1241 ATGAGGATAATGTGTCAGATTTTATCAGGGTGGGAGGTATCCAAAAGCTAC-AGGATGGA 1299
|||||||||||||||| | ||||||||| |||||||| |||| ||||| | | || |||
Sbjct 1157 ATGAGGATAATGTGTCTGCTTTTATCAGCGTGGGAGGCGTCCAGAAGCTTCTA-GAAGGA 1215
Query 1300 GAGTTTATTGTTCAAGCAACTAAAGATTGTGTTTCCAAAACACTAAAGAGATTGGAGGAG 1359
|||||||||||||||||||||||||||||||| |||||||| |||| ||||| |||| |
Sbjct 1216 AAGTTTATTGTTCAAGCAACTAAAGATTGTGTTACCAAAACAGTAAAAAGATTAGAGGGG 1275
Query 1360 AAGATTCATGGAAGAGTTCTGAGACATCTGTTGTACCTAATGCGCATTTCAGAGAAGTCT 1419
|||||||| ||||||||| | | |||||| |||||||| |||| || |||||| ||| ||
Sbjct 1276 AAGATTCAGGGAAGAGTTTTAACACATCTATTGTACCTGATGCACAGTTCAGACAAG-CT 1334
Query 1420 -ATCCAAAGACGAGTTGCTCTTGCCCTTGCTCATCTCTGTTCACCC-GAGGATCAACGAA 1477
||||||||||||||||||||||| ||||| | ||||||||| ||| |||||||| ||||
Sbjct 1335 TATCCAAAGACGAGTTGCTCTTGCTCTTGCCCTTCTCTGTTC-CCCAGAGGATCAGCGAA 1393
Query 1478 CCATATTCATAGATGACAACGGGTTGGAGTTGCTACTCGGTCTTCTTGGTTCTTTAAACA 1537
|||||||| | | | | | ||||| || || | | | | || | ||||
Sbjct 1394 CCATATTCTT-GCT--C--C---TTGGACTT-CT--T-GAT-T-CTA----C---AAACG 1432
Query 1538 CTAAGCAGCAACTTGACGGTGCAGCAGCGT-TGTACAAAT-TAGCAAATAAATCTATGGC 1595
|||||||||||||||| |||| | ||| | | ||||| | ||||||||| |||||||||
Sbjct 1433 CTAAGCAGCAACTTGATAGTGCTGTAGC-TCTATACAA-TCTAGCAAATAGATCTATGGC 1490
Query 1596 ACTTTCTCCAGTTGATGCTGCTCCTCCTTCTCCAACACAAAGGGTTTATCTCGGAGAGCA 1655
|||||| ||| |||||||||||||| ||||||||||||| ||| ||||| |||||| |
Sbjct 1491 GCTTTCTTTAGTCGATGCTGCTCCTCCATCTCCAACACAAATGGTATATCTTGGAGAGAA 1550
Query 1656 ATATGTAAATAATGCTACGCTGTCTGATGTAACCTTTCTAGTCGAAGGAAGGACATTCTA 1715
||||||||||||||||||| |||||||||| ||||||||||| ||||| |||| ||||||
Sbjct 1551 ATATGTAAATAATGCTACGTTGTCTGATGTGACCTTTCTAGTTGAAGGCAGGAGATTCTA 1610
Query 1716 TGCACACAGAATTTGTCTGCTGGCATCCTCAGATGCATTTCGTGCAATGTTTGATGGTGG 1775
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1611 TGCTCACAGAATTTGTCTGCTGGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGG 1670
Query 1776 TTACAGAGAAAAAGACGCTAGAGATATTGAGATTCCAAATAT-CAAATGGGAGGTGTTTG 1834
||| |||||||||| || |||||||| |||||||||||||| ||| ||||| || ||||
Sbjct 1671 CTACCGAGAAAAAGATGCAAGAGATATCGAGATTCCAAATATTCAA-TGGGAAGTTTTTG 1729
Query 1835 AGTTAATGATGAGGTTTATATACACTGGATCTGTCGACATAACAAATGAGATAT-CAAAA 1893
||||||||||||||||| ||||||| || || ||| |||| ||||| ||||| | || ||
Sbjct 1730 AGTTAATGATGAGGTTTCTATACACGGGTTCAGTCAACATCACAAAAGAGAT-TGCAGAA 1788
Query 1894 GATCTTCTAAGAGCAGCGGATCAGTATCTCTTGGAGGGCCTGAAACGACTCTGTGAATAC 1953
|| ||||||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 1789 GACCTTCTAAGAGCAGCGGATCAGTATCTCTTGGAGGGGCTCAAGCGACTCTGTGAATAC 1848
Query 1954 ACAATTGCTCAGGATATTACGTTGGA-AAGTATAGG-AGACATGTACGAGCTATCAGAAG 2011
| |||| ||||||||| | | |||| || ||||| || || |||||| || |||||||
Sbjct 1849 ATTATTGGTCAGGATATAATGGTGGAGAAC-ATAGGGAG-CAAGTACGATCTCTCAGAAG 1906
Query 2012 CATTCCATGCGATGTCGCTGAGGCA-AGCTTGTATCATGTTCATCCTGGAGCA-TTTCGA 2069
||||| | || | ||| |||| ||| | |||||||| | |||||||| | || ||| ||
Sbjct 1907 CATTCAACGCAAAGTCACTGAAGCAGA-CTTGTATCTTATTCATCCTTAAACACTTT-GA 1964
Query 2070 TAAACTGAGTTCAATGCCTTGG-CAGAACGAGCTGGTGCAGAGAACAATACCAGAGATAA 2128
||||||| ||| || || || | ||| | ||||||||| ||||||| |||||||||
Sbjct 1965 TAAACTGCGTTTAAAACCCGGGACT-AACCAACTGGTGCAGCGAACAATCCCAGAGATAC 2023
Query 2129 G-AGAGTACTTTTGTAGAGCCCT-AACAAAGTCTACTA 2164
| | | ||| | ||||||| ||| ||||| | ||||||
Sbjct 2024 GCAAA-TACATGTGTAGAGTCCTCAACAA-GACTACTA 2059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93892453925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5