BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19340.1
Length=1114
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488819 jgi|Araly1|488819|fgenesh2_kg.6__1953__AT5G19340.1 1581 0.0
> Ahg488819 jgi|Araly1|488819|fgenesh2_kg.6__1953__AT5G19340.1
Length=1096
Score = 1581 bits (856), Expect = 0.0
Identities = 1042/1125 (93%), Gaps = 40/1125 (4%)
Strand=Plus/Plus
Query 1 GTTTGTAACTTCATAACTAGCTCCATTGTTACATAGTACGATCATGGTATCAGCAGAAAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTTTGTAACTTCATAACTAGCTCCATTGTTACATAGTACGATCATGGTATCAGCAGAAAC 60
Query 61 GGCGACAATGGCTGAGGCTGAACCGTCGACGACAGGGCCTCGCATTTCCTTCTCAGCGGA 120
|||||||||||| ||||| |||| |||| ||||||||||||||||||||||||||||||
Sbjct 61 GGCGACAATGGCGGAGGCGGAACAGTCGTTGACAGGGCCTCGCATTTCCTTCTCAGCGGA 120
Query 121 TTTGTCATCATCAGATAGCGACGGAGATTTCATCTGTATCAACCCTGTGATGAATCTCAT 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 121 TTTGTCATCATCAGATAGCGACGGAGATTTCATCTGCATCAACCCTGTGATGAATCTCAT 180
Query 181 TGTGGGTAGAGAAGAAAAAGACAAGAGCTCAGTGAAAGCCGGAGACTTTGAGTTTCTGTC 240
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TGTGGGTAAAGAAGAAAAAGACAAGACCTCAGTGAAAGCCGGAGACTTTGAGTTTCTGTC 240
Query 241 GGAAAATGCAACGATGCTTAGCGCTGACGAGTTGTTCTCCGAAGGAAAGTTACTTCCTTT 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 GGAAAATGCAACGATGCTTAGCGCTGACGAGTTGTTCTCTGAAGGAAAGTTACTTCCTTT 300
Query 301 CTGGCAGGTTAAGCATTCAGAGAAGCTTAAAAACGTTACATTGAAACCAAAAGTCGAAGT 360
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 301 CTGGCAGGTTAAGCATTCAGAGAAGCTTAAAAACGTTACCTTGAAAACAAAAGTCGAAGT 360
Query 361 CCAACAAGAAGAAGAAGATCATAAAGTAGTGAACGAGGAGGGTTTTGTTCATAACAAGGA 420
| || |||||||||||||||| ||||||||||| ||||||||| ||||||||||| | |
Sbjct 361 CGAAGAAGAAGAAGAAGATCAGAAAGTAGTGAAAGAGGAGGGTATTGTTCATAAC-A--A 417
Query 421 GCAAGAGAATAATaacaacaacaacaacaacaacaacaacaGAGGAAGCTGGTTTCTTGA 480
|||| | | ||| | || |||||||||||||||||||||||||||||||||||
Sbjct 418 -CAAG-G------AGCAA-GAGAATAACAACAACAACAACAGAGGAAGCTGGTTTCTTGA 468
Query 481 CGACGACCCTTCTCCACGTCCACCAAAATGTACTGTGCTGTGGAAAGAGCTTTTGCGGCT 540
|||||||||||||||||||||||| || || || |||||||||||||||||||||||| |
Sbjct 469 CGACGACCCTTCTCCACGTCCACCGAAGTGCACGGTGCTGTGGAAAGAGCTTTTGCGGTT 528
Query 541 GAAGAAACAGAGGACTACCACGACTACGACGG---CTTCAACGAGGGTATCGTCTCTCTC 597
|||||||||||||||| ||||| ||||||| | |||||||||||||||||||||||
Sbjct 529 GAAGAAACAGAGGACT---ACGACAACGACGGTTTCGTCAACGAGGGTATCGTCTCTCTC 585
Query 598 GCCGTCTTCTTCTTCAAGCTCGACATCGTCTTCTTCGAGTTCGATTGGCGATGCGGTgaa 657
||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 586 GCCGTCTTCTTCTTCTAGCTCGACTTCGTCTTCTTCGAGTTCGATTGGGGATGCGGTGAA 645
Query 658 gaaggaggagagagagaaggaagggaagagaggtaagaaagggttagagagaacgagaTC 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 GAAGGAGGAGAGAGAGAAGGAAGGGAAGAGAGGTAAGAAAGGGTTAGAGAGAACGAGATC 705
Query 718 TGTGACTATGAGGATAAGACCAATGATTCATGTTCCTGTTTGTACTCCGTCTAAGTCCTC 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 TGTGACTATGAGGATAAGACCAATGATTCATGTTCCTGTTTGTACTCCGTCTAAGTCCTC 765
Query 778 TTCTCGATTGCCTCCTCTGTTTCCTCTAAGGCTCCAGAAAAACAGAGTTGAGAGATGAAC 837
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 766 TGCTCGATTGCCTCCTCTGTTTCCTATAAGGCTCCAGAAAAACAGAGTTGAGAGACGAAC 825
Query 838 TTGATCAACATATCTGTTTATCTTTTTGTGACTTATATATCTGTTTATCCTTTGGTTGGG 897
||||||||||||||||||||||| |||||||||||||| | | || ||||||||||||
Sbjct 826 TTGATCAACATATCTGTTTATCTATTTGTGACTTATATCTATCCTT--CCTTTGGTTGGG 883
Query 898 TTTTT-GTGATTAGATGGATCTTTGTGATTGAG-ATCTGAGGTGTGACAGTGTAAATGTG 955
||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 884 TTTTTTGTGATTAGATGGATCTTTGTGATTGAGGA-CTGAGGTGTGACAGTGTAAATGTG 942
Query 956 ATGGGCATTTTCATACCCGAAAACAATAAGAAATTTCATCATTGAACACATCCATTTTTA 1015
| ||||||||||||||||||||||||||||| | | || | ||| |||||||||
Sbjct 943 AAGGGCATTTTCATACCCGAAAACAATAAGA--TG--A--AT--A-CAC--CCATTTTTA 991
Query 1016 TGCTTTTTCATT--AT---GTATTTGGATTCGAAAGTCTTGTTCTTTGTT-GTGTATCTC 1069
|||||||||||| || || ||||||||||||||||||||||||| || |||||||||
Sbjct 992 TGCTTTTTCATTTCATTATGTTTTTGGATTCGAAAGTCTTGTTCTTTTTTTGTGTATCTC 1051
Query 1070 TGTCAGTATCTAAGCCTAAAGTTTTCAAAGGTTTGGGTTTATTAG 1114
|||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 TGTCTGTATCTAAGCCTAAAGTTTTCAAAGGTTTGGGTTTATTAG 1096
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41515856613
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5