BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19360.1
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326334 jgi|Araly1|326334|fgenesh1_pm.C_scaffold_6001554 2488 0.0
Ahg488060 jgi|Araly1|488060|fgenesh2_kg.6__1194__AT5G12180.1 1724 0.0
> Ahg326334 jgi|Araly1|326334|fgenesh1_pm.C_scaffold_6001554
Length=1578
Score = 2488 bits (1347), Expect = 0.0
Identities = 1502/1578 (95%), Gaps = 6/1578 (0%)
Strand=Plus/Plus
Query 1 ATGGGAAATTGTTGCTCTCATGGAAGAGATTCAGATGATAACAAAGAAGAACCGAGGCCG 60
|||||||||||||||||||||||| ||||||||| | ||||||||||||| ||||||||
Sbjct 1 ATGGGAAATTGTTGCTCTCATGGACGAGATTCAGGTAATAACAAAGAAGACCCGAGGCCC 60
Query 61 GAAAAT------GGAGGCGGCGGTGTTGGTGCCGCTGAAGCCTCTGTTAGAGCTTCTAAA 114
|||||| ||||||||||||| ||||||||||||||||||||| |||||||||| |
Sbjct 61 GAAAATGGAGGAGGAGGCGGCGGTGCTGGTGCCGCTGAAGCCTCTGTGAGAGCTTCTAGA 120
Query 115 CACCCGCCAGCATCTCCTCCTCCTGCAACCAAACAAGGACCAATAGGACCTGTCTTAGGG 174
|||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 121 CACCCGCCAGCATCTCCTCCTCCTGCAACCAAACAAGGGCCAATTGGACCAGTCTTAGGG 180
Query 175 CGACCAATGGAAGATGTAAAGAGCTCATATACATTGGGTAAGGAGCTAGGTCGTGGACAG 234
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 181 CGACCAATGGAAGATGTAAAAAGCTCATATACATTGGGTAAGGAGCTGGGTCGCGGACAG 240
Query 235 TTTGGGGTGACTCATCTCTGCACGCAAAAGGCCACGGGGCTGCAATTCGCTTGCAAGACC 294
||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 241 TTTGGGGTGACCCATCTCTGCACCCAAAAGGCCACAGGGCTGCAATTCGCTTGCAAGACC 300
Query 295 ATTGCTAAAAGGAAGCTCGTGAACAAAGAAGACATTGAGGATGTGAGAAGGGAGGTGCAG 354
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTGCTAAGAGGAAGCTGGTGAACAAAGAAGACATTGAGGATGTGAGAAGGGAGGTGCAG 360
Query 355 ATTATGCATCACTTGACCGGTCAGCCAAACATTGTGGAGCTTAAAGGAGCGTATGAGGAT 414
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATAATGCATCATTTGACCGGTCAGCCAAACATTGTGGAGCTTAAAGGAGCGTATGAGGAT 420
Query 415 AAGCATTCTGTGCATTTGGTTATGGAGCTTTGCGCGGGAGGTGAGTTGTTCGACAGGATT 474
||||||||||||||||||||||||||||||||||| || || |||||||| || |||||
Sbjct 421 AAGCATTCTGTGCATTTGGTTATGGAGCTTTGCGCAGGCGGAGAGTTGTTTGATAGGATC 480
Query 475 ATCGCAAAGGGACATTATTCGGAGAGAGCTGCAGCCTCGTTACTACGGACGATTGTGCAG 534
|| |||||||| ||||| || |||||||| || || ||||| ||||||||||||||||||
Sbjct 481 ATTGCAAAGGGGCATTACTCTGAGAGAGCCGCGGCTTCGTTGCTACGGACGATTGTGCAG 540
Query 535 ATTATCCATACTTGCCATTCCATGGGGGTTATCCACAGGGACTTGAAGCCTGAGAACTTT 594
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 541 ATTATCCATACTTGCCATTCCATGGGGGTTATCCACAGGGATTTGAAGCCTGAGAACTTT 600
Query 595 TTGTTGCTTAGCAAGGATGAGAATTCTCCTCTGAAAGCCACCGACTTCGGGTTATCCGTG 654
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTGTTGCTAAACAAGGATGAGAATTCTCCTCTGAAAGCCACCGACTTCGGGTTATCCGTG 660
Query 655 TTCTACAAACCAGGAGAGGTGTTCAAAGACATTGTGGGAAGTGCTTATTACATTGCACCA 714
|||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 661 TTCTACAAGCCAGGAGAGGTGTTCAAAGACATTGTAGGAAGTGCCTATTACATTGCACCA 720
Query 715 GAGGTGTTGAGGAGGAAGTATGGACCAGAGGCTGATATTTGGAGCATTGGTGTCATGTTG 774
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 721 GAGGTGTTGAGGAGGAAGTATGGACCAGAGGCTGATATTTGGAGCATCGGTGTCATGTTG 780
Query 775 TATATCCTCCTGTGTGGTGTTCCACCTTTTTGGGCTGAGTCAGAGAATGGGATTTTCAAT 834
||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 781 TATATCCTCTTGTGTGGTGTTCCACCTTTCTGGGCTGAGTCGGAGAATGGGATATTCAAC 840
Query 835 GCCATCCTAAGTGGACAGGTTGATTTTTCAAGCGATCCATGGCCAGTCATCTCACCACAG 894
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 841 GCCATCCTAAGTGGACAGGTTGATTTTTCAAGCGATCCATGGCCAGTCATTTCACCACAG 900
Query 895 GCAAAAGACCTCGTTAGGAAGATGCTCAACTCTGATCCAAAACAAAGATTAACCGCTGCT 954
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 901 GCAAAGGACCTCGTTAGGAAGATGCTCAACTCTGATCCCAAACAAAGATTAACCGCTGCT 960
Query 955 CAAGTTCTCAATCATCCATGGATCAAGGAGGATGGAGAAGCACCGGATGTTCCTCTTGAC 1014
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 961 CAAGTTCTCAACCATCCATGGATCAAGGAAGATGGAGAAGCACCAGATGTTCCTCTTGAC 1020
Query 1015 AATGCAGTGATGTCTAGGCTCAAGCAGTTCAAAGCAATGAACAACTTTAAGAAAGTTGCT 1074
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1021 AATGCAGTGATGTCTAGGCTCAAGCAATTCAAAGCAATGAACAACTTTAAGAAAGTTGCT 1080
Query 1075 TTACGGGTGATAGCCGGGTGCTTATCAGAGGAAGAAATCATGGGGTTAAAAGAGATGTTC 1134
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1081 TTACGGGTGATAGCCGGGTGCTTATCAGAGGAAGAAATCATGGGGTTAAAGGAGATGTTC 1140
Query 1135 AAAGGAATGGACACTGACAACAGTGGAACCATAACTCTTGAGGAACTAAGACAGGGACTT 1194
|||||||||||||| |||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 1141 AAAGGAATGGACACCGACAACAGCGGAACCATAACTCTTGAAGAGCTAAGACAGGGACTT 1200
Query 1195 GCTAAGCAAGGTACAAGGTTATCCGAATACGAAGTCCAGCAACTAATGGAAGCTGCTGAT 1254
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1201 GCCAAGCAAGGTACAAGGTTATCCGAATACGAAGTCCAGCAATTAATGGAAGCTGCTGAT 1260
Query 1255 GCGGACGGTAATGGAACAATAGACTATGGGGAGTTCATTGCAGCTACAATGCACATCAAC 1314
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GCAGACGGTAATGGAACAATAGACTATGGGGAGTTCATTGCAGCTACAATGCACATCAAC 1320
Query 1315 AGGCTCGACAGAGAAGAGCATCTCTACTCAGCCTTCCAACACTTTGACAAAGACAACAGT 1374
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 AGGCTCGACAGAGAAGAGCATCTCTACTCAGCCTTCCAACACTTTGACAAAGACAACAGC 1380
Query 1375 GGATATATCACAACGGAAGAGCTAGAGCAAGCCCTTCGGGAGTTTGGCATGAACGATGGC 1434
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GGATATATCACAATGGAAGAGCTAGAGCAAGCCCTTCGGGAGTTTGGCATGAACGATGGC 1440
Query 1435 AGAGACATTAAGGAAATCATTTCTGAGGTTGATGGAGACAATGATGGGCGGATAAACTAC 1494
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1441 AGAGACATTAAGGAAATCATTTCTGAGGTTGATGGAGACAACGATGGGAGGATAAACTAC 1500
Query 1495 GAGGAATTTGTGGCGATGATGAGAAAAGGAAACCCAGATCCTAATCCTAAGAAGCGGCGT 1554
||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 1501 GAGGAATTTGTGGCGATGATGAGAAAAGGTAACCCAGATCCTAACCCGAAGAAGCGGCGT 1560
Query 1555 GAACTATCATTCAAATGA 1572
||||| ||||||||||||
Sbjct 1561 GAACTGTCATTCAAATGA 1578
> Ahg488060 jgi|Araly1|488060|fgenesh2_kg.6__1194__AT5G12180.1
Length=1940
Score = 1724 bits (933), Expect = 0.0
Identities = 1282/1453 (88%), Gaps = 14/1453 (1%)
Strand=Plus/Plus
Query 127 TCTCCTCCTCCTGCAACCAAACAAGGACCAATAGGACCTGTCTTAGGGCGACCAATGGAA 186
||||||||||| |||||||||||||| || |||||||||||| |||| ||||| ||||||
Sbjct 246 TCTCCTCCTCCGGCAACCAAACAAGGCCCTATAGGACCTGTCCTAGGTCGACCCATGGAA 305
Query 187 GATGTAAAGAGC-TCATATACATT-GGGTAAGGAGCTAGGTCGTGGACAGTTTGGGGTGA 244
|||||||| | | |||||| | || ||| || ||||| || || || || || || || |
Sbjct 306 GATGTAAA-ATCTTCATATTCTTTAGGG-AAAGAGCTCGGGCGAGGCCAATTCGGTGTCA 363
Query 245 CTCATCTCTGCACGCAAAAGGCCACGGGGC-TGCAATTCGCTTGCAAGACCATTGCTAAA 303
| || |||||||| || ||||| || || | | ||||| ||||||||||||||||| |||
Sbjct 364 CACACCTCTGCACACAGAAGGCAACAGGTCAT-CAATTTGCTTGCAAGACCATTGCGAAA 422
Query 304 AGGAAGCTCGTGAACAAAGAAGACATTGAGGATGTGAGAAGGGAGGTGCAGATTATGCAT 363
|||||||| |||||||| ||||||||||||||||| ||||| || |||||||| ||||||
Sbjct 423 AGGAAGCTTGTGAACAAGGAAGACATTGAGGATGTAAGAAGAGAAGTGCAGATAATGCAT 482
Query 364 CACTTGACCGGTCAGCCAAACATTGTGGAGCTTAAAGGAGCGTATGAGGATAAGCATTCT 423
||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 483 CACCTGACTGGTCAGCCAAACATTGTGGAGCTTAAAGGAGCTTATGAGGATAAGCATTCC 542
Query 424 GTGCATTTGGTTATGGAGCTTTGCGCGGGAGGTGAGTTGTTCGACAGGATTATCGC-AAA 482
|||||||||||||||||||||||||| || || ||||||||||| |||||||| || |||
Sbjct 543 GTGCATTTGGTTATGGAGCTTTGCGCAGGTGGAGAGTTGTTCGATAGGATTATTGCTAAA 602
Query 483 GGGACATTATTCGGAGAGAGCTGCAGCCTCGTTACTACGGACGATTGTGCAGATTATCCA 542
|||||||| ||||||||||| || || ||||| ||| | |||||||| |||||| | ||
Sbjct 603 -GGACATTACTCGGAGAGAGCAGCTGCTTCGTTGCTAAGAACGATTGTTCAGATTGTGCA 661
Query 543 TACTTGCCATTCCATGGGGGTTATCCACAGGGACTTGAAGCCTGAGAACTTTTTGTTGCT 602
||||||||||||||||||||| || |||||||| ||||| || ||||||||| | |||||
Sbjct 662 TACTTGCCATTCCATGGGGGTGATTCACAGGGATTTGAAACCAGAGAACTTTCTCTTGCT 721
Query 603 TAGCAAGGATGAGAATTCTCCTCTGAAAGCCACCGACTTCGGGTTATCCGTGTTCTACAA 662
| ||| ||||||||||||||||| ||||| || ||||| ||||| || || || |||||
Sbjct 722 CAACAAAGATGAGAATTCTCCTCTCAAAGCTACTGACTTTGGGTTGTCGGTTTTTTACAA 781
Query 663 ACCAGGAGAGGTGTTCAAAGACATTGTGGGAAGTGCTTATTACATTGCACCAGAGGTGTT 722
||||||||||||||||| || |||||||| |||||||||||||| ||||||||||| ||
Sbjct 782 GCCAGGAGAGGTGTTCAAGGATATTGTGGGGAGTGCTTATTACATCGCACCAGAGGTTTT 841
Query 723 GAGGAGGAAGTATGGACCAGAGGCTGATATTTGGAGCATTGGTGTCATGTTGTATATCCT 782
| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 842 AAAAAGAAAGTATGGACCAGAGGCAGATATTTGGAGTATTGGTGTCATGTTGTATATCCT 901
Query 783 CCTGTGTGGTGTTCCACCTTTTTGGGCTGAGTCAGAGAATGGGATTTTCAATGCCATCCT 842
| | |||||||| ||||| || ||||||||||| ||||| ||||| ||||| ||||||||
Sbjct 902 CTTATGTGGTGTCCCACCATTCTGGGCTGAGTCGGAGAACGGGATATTCAACGCCATCCT 961
Query 843 AAGTGGACAGGTTGATTTTTCAAGCGATCCATGGCCAGTC-ATCTCACCACAGGCAAAAG 901
||| ||||| |||||||| ||||| |||||||||||| || ||||| || ||||| || |
Sbjct 962 AAGGGGACATGTTGATTTCTCAAGTGATCCATGGCCA-TCTATCTCGCCTCAGGCGAAGG 1020
Query 902 ACCTCGTTAGGAAGATGCTCAACTCTGATCCAAAACAAAGATTAACCGCTGCTCAAGTTC 961
| || |||| ||||||||||||||||||||| || ||||||||||| ||||| |||||||
Sbjct 1021 ATCTTGTTAAGAAGATGCTCAACTCTGATCCCAAGCAAAGATTAACTGCTGCCCAAGTTC 1080
Query 962 TCAATCATCCATGGATCAAGGAGGATGGAGAAGCACCGGATGTTCCTCTTGACAATGCAG 1021
|||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 1081 TCAACCATCCATGGATCAAGGAGGATGGAGAGGCACCAGATGTTCCTCTTGACAATGCGG 1140
Query 1022 TGATGTCTAGGCTCAAGCAGTTCAAAGCAATGAACAACTTT-AAGAAAGTTGCTTTACGG 1080
||||||| ||||||||||||||||||||||||||||| ||| ||||||||||| ||||||
Sbjct 1141 TGATGTCAAGGCTCAAGCAGTTCAAAGCAATGAACAA-TTTCAAGAAAGTTGCATTACGG 1199
Query 1081 GTGATAGCCGGGTGCTTATCAGAGGAAGAAATCATGGGGTTAAAAGAGATGTTCAAAGGA 1140
|||||||| || ||||||||||||||||| ||||||||||| || |||||||| |||||
Sbjct 1200 GTGATAGCAGGCTGCTTATCAGAGGAAGAGATCATGGGGTTGAAGGAGATGTTTAAAGGT 1259
Query 1141 ATGGACACTGACAACAGTGGAACCATAACTCTTGAGGAACTAAGACAGGGACTTGCTAAG 1200
||||||||||| | ||||||||| || || || ||||| |||||||||||||||| |||
Sbjct 1260 ATGGACACTGATAGCAGTGGAACAATTACACTCGAGGAGTTAAGACAGGGACTTGCCAAG 1319
Query 1201 CAAGGTACAAGGTTATCCGAATACGAAGTCCAGCAACTAATGGAAGCTGCTGATGCGGAC 1260
|||||||||||||| || ||||| ||||| ||||| |||||||||||||||||||| ||
Sbjct 1320 CAAGGTACAAGGTTGTCAGAATATGAAGTTCAGCAGCTAATGGAAGCTGCTGATGCTGAT 1379
Query 1261 GGTAATGGAACAATAGACTATGGGGAGTTCATTGCAGCTACAATGCACATCAACAGGCTC 1320
||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| ||
Sbjct 1380 GGTAATGGAACAATAGACTATGGTGAGTTTATCGCAGCAACAATGCACATCAACAGACTT 1439
Query 1321 GACAGAGAAGAGCATCTCTACTCAGCCTTCCAACACTTTGACAAAGACAACAGTGGATAT 1380
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GACAGAGAAGAACATCTTTACTCAGCCTTCCAACACTTTGACAAAGACAACAGTGGATAT 1499
Query 1381 ATCACAACGGAAGAGCTAGAGCAAGCCCTTCGGGAGTTTGGCATGAACGATGGCAGAGAC 1440
||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1500 ATCACAATGGAAGAGCTGGAGCAAGCCCTCCGGGAGTTTGGCATGAATGATGGCAGAGAC 1559
Query 1441 ATTAAGGAAATCATTTCTGAGGTTGATGGAGACAATGATGGGCGGATAAACTACGAGGAA 1500
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||| || |||
Sbjct 1560 ATTAAGGAGATCATTTCCGAGGTTGATGGAGACAATGATGGTCGGATAAACTATGATGAA 1619
Query 1501 TTTGTGGCGATGATGAGAAAAGGAAACCCAGATCCTAATCCTAAGAA-GCGGCGTGAACT 1559
|||||||| |||||||||||||||||||| ||||| ||||| || || ||||||||||||
Sbjct 1620 TTTGTGGCAATGATGAGAAAAGGAAACCCGGATCC-AATCCCAAAAAAGCGGCGTGAACT 1678
Query 1560 ATCATTCAAATGA 1572
||||||||||||
Sbjct 1679 TTCATTCAAATGA 1691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58887518770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5