BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19370.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488823 jgi|Araly1|488823|fgenesh2_kg.6__1957__AT5G19370.1 1467 0.0
> Ahg488823 jgi|Araly1|488823|fgenesh2_kg.6__1957__AT5G19370.1
Length=995
Score = 1467 bits (794), Expect = 0.0
Identities = 921/981 (94%), Gaps = 14/981 (1%)
Strand=Plus/Plus
Query 14 TTCTTTGAGTGGTTAACTTGTAAATTTCTCTCACACTTGGACTCGTTACCCAAAAGAACC 73
|||||||||||| |||||||| || ||||||||||||||||| || ||||| ||||||
Sbjct 1 TTCTTTGAGTGGGTAACTTGT-AA--CCTCTCACACTTGGACTCTTTGCCCAAGAGAACC 57
Query 74 CATAATGTTTAGAGTGACCGGAACTCTCTCGGCGGCATCATCTCCAGCGGTGGCGGCGGC 133
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 CATAATGTTTAGAGTAACCGGAACTCTCTCGGCGGCATCATCTCCAGCGGTGGCGGCGGT 117
Query 134 GTCTTTCTCCGCCGCTCTAAGACTTTCCATAACTCCCACTCTCGCTATCGCCTCTCCTCC 193
|||| ||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||
Sbjct 118 GTCTATCTCCGCCGCTCTAAGACTCTCCATCACTCCCACTCTCGCTATCGTCTCTCCTCC 177
Query 194 CCATCTCCGTTGGTTCTCGAAGTTTTCTCGTCAATTTCTCGGCGGACGCATCTCTTCACT 253
|||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 178 TCATCTCCGCTGGTTCTCCACGTTTTCTCGTCAATTTCTCGGCGGACGCATCTCTTCACT 237
Query 254 CCGACCACGCATTCCTTCTCCGTGCCCGATTCGACTCTCTGGTTTCCCGGCTCTCAAAAT 313
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 238 CCGACCACGCATTCCTTCTCCGTGCCCGATTCGACTCTCTGGTTTCTCGGCTCTCAAAAT 297
Query 314 GAGAGCTTCGTTTAGCAGTGGGAGTAGTGGAAGTAGTGCAAGTAGAGAGATTCTGGTGCA 373
|||||||||||||||| ||| | || |||||||||||||||||||||||||||||
Sbjct 298 GAGAGCTTCGTTTAGC------AGT-G-GG-AGTAGTGCAAGTAGAGAGATTCTGGTGCA 348
Query 374 GCATTTGCTTGTTAAGAATAATGATGTTGAGCTCTTTGCCGAACTCCAAAAGA-AATTCT 432
|||||||||||||||| || ||||||||||||||||||| ||||||||||||| || |||
Sbjct 349 GCATTTGCTTGTTAAGGATGATGATGTTGAGCTCTTTGCTGAACTCCAAAAGAGAA-TCT 407
Query 433 TGGATGGAGAGGAGATGAGTGATCTTGCGGCTGAGTATTCGATTTGTCCTTCCAAAAAGG 492
|||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 408 TGGAAGGAGAGGAGATGAGTGATCTTGCGGCTGAGTACTCGATTTGTCCATCCAAAAAGG 467
Query 493 ACGGTGGTATACTTGGATGGGTAAAACTGGGTCAAATGGTACCAGAGTTTGAGGAAGCTG 552
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 ACGGTGGTGTACTTGGATGGGTAAAACTGGGTCAAATGGTACCAGAGTTTGAGGAAGCTG 527
Query 553 CGTTTAAAGCAGAGCTGAATCAGGTGGTGAGGTGTAGAACCCAATTTGGCTTGCACTTAT 612
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 CGTTTAAAGCAGAGCCGAATCAGGTGGTGAGGTGTAGAACCCAATTTGGCTTGCACTTAT 587
Query 613 TGCAAGTTCTATCTGAGAGAGAACCGGTGAAAGATATCCAGGTAGAGGAGCTGCATTCCA 672
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 588 TGCAAGTTCTATCTGAGAGAGAACCAGTGAAAGATATCCAGGTAGAGGAGCTACATTCCA 647
Query 673 AAATGCAAGATCCAGTTTTCATGGATGAGGCTCAGTTAATTGATGTCAGAGAACCCAATG 732
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 648 AAATGCAAGATCCAGTTTTCATGGATGAGGCTCAGTTAATTGATGTCAGAGAACCCGACG 707
Query 733 AGATAGAGATAGCATCCTTGCCAGGATTCAAAGTGTTCCCACTCCGCCAATTTGGAACAT 792
|||||| || |||||||||||||||||| ||||| |||| ||||| ||||| ||||| |
Sbjct 708 AGATAGCCATTGCATCCTTGCCAGGATTCCAAGTGCTCCCGCTCCGTCAATTCGGAACCT 767
Query 793 GGGCACCAGACATCACTTCAAAGCTGAACCCTGAGAAGGATACATTTGTCTTGTGCAAGG 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 GGGCACCAGACATCACTTCAAAGCTGAACCCTGAGAAGGATACATTTGTCTTGTGCAAGG 827
Query 853 TTGGTGGCAGGTCAATGCAGGTTGCCAACTGGTTACAGTCTCAGGGCTTCAAGAGTGTGT 912
||||||||| || ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 828 CTGGTGGCAGATCGATGCAAGTTGCCAACTGGTTACAGTCTCAGGGCTTCAAGAGTGTAT 887
Query 913 ACAACATTACTGGTGGGATACAAGCTTATTCTCTCAAGGTTGACCCATCAATTCCTACTT 972
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 888 ACAACATCGCTGGTGGAATACAAGCTTATTCTCTCAAGGTTGACCCATCAATTCCTACCT 947
Query 973 ACTGAAATTGAGCATCTTAGT 993
|||||||||||||||||||||
Sbjct 948 ACTGAAATTGAGCATCTTAGT 968
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5