BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19380.2
Length=1881
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893867 jgi|Araly1|893867|Al_scaffold_0006_1863 1509 0.0
Ahg488059 jgi|Araly1|488059|fgenesh2_kg.6__1193__AT5G12170.2 662 0.0
> Ahg893867 jgi|Araly1|893867|Al_scaffold_0006_1863
Length=1314
Score = 1509 bits (817), Expect = 0.0
Identities = 881/913 (96%), Gaps = 0/913 (0%)
Strand=Plus/Plus
Query 759 GTATGTAGCTGTATACTTTTCGATTTTGTATTTCAGATACCGAGCTGGAATTGTTACAAA 818
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 402 GTATGTAGCTGTATACTTTTCGATCTTGTATTTCAGATACCGAGCTGGAATTGTTACAAA 461
Query 819 AGAGATGCTATCAGTTCCAAAACTTCCATTTTTAATTGTTGGCGTCTTGGAGTCTCTTGC 878
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 462 AGAGATGCTATCAGTTCCAAAACTTCCATTTTTAATTGTTGGCGTCTTAGAGTCTCTTGC 521
Query 879 TCTAGCTGCTGGGATGGCGGCCGCATCAAATCTTTCTGGACCATCTACTACAGTTTTATC 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 TCTAGCTGCTGGGATGGCGGCCGCATCAAATCTTTCTGGACCATCTACTACAGTTTTATC 581
Query 939 TCAGACATTTCTTGTCTGGCAAATTCTTTTCTCCATTATATTTCTCGGGAGGAGATATAG 998
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 TCAGACATTTCTTATCTGGCAAATTCTTTTCTCCATTATATTTCTCGGGAGGAGATATAG 641
Query 999 AATAAATCAAATATTGGGATGTACTCTTGTAGCATTTGGTGTAATCGTCAGTGTAGCAAG 1058
|||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 642 GATAAATCAAATATTAGGATGTACTCTTGTAGCAGTTGGTGTAATCGTCAGTGTGGCAAG 701
Query 1059 TGGGTCGGGTGCCGCTCATTCATTTAAAGATACAGGAATACTTTGGAGTCTTCTTATGGT 1118
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 TGGATCGGGTGCCGCTCATTCATTTAAAGATACAGGAATACTTTGGAGTCTTCTTATGGT 761
Query 1119 GTTTTCTTTTCTGCTTCAAGGAGCAGATACAGTAATGAAGGAAGTCATCTTTCTAGATAG 1178
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 GTTGTCTTTTCTGCTTCAAGGAGCAGATACAGTAATGAAGGAAGTCATCTTTCTAGATAG 821
Query 1179 CAAAAAGCGATTGAAGGGTGCTTCACTTGATTTGTTTGTTGTAAACTCATATGGTTCAAT 1238
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 822 CAAAAAGCGGTTGAAGGGTGCTTCACTTGATCTGTTTGTTGTAAACTCATATGGTTCAGT 881
Query 1239 TTTCCAAGTCATATGCATTGCGTTGCTTCTTCCTTTTCTTTCAAAGCTTTGGGGCATACC 1298
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 882 TTTCCAAGTCATATGCATTGCATTGCTTCTTCCTTTTCTTTCAAAACTTTGGGGCATACC 941
Query 1299 GTTTAACCAACTACCGAGCTATATCAGAGACGGGGGTGCTTGCTTTCTAAATATTGGTTC 1358
|||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 942 GTTTAACCAACTACCGAGTTATATCAGAGACGGGGGTGCTTGTTTTCTGAATATTGGTTC 1001
Query 1359 TAGAATAACAGGATGCGAAGGGGCTCCCCTTCTTCCTGTAATGTTTGTCATGATGAACAT 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 TAGAATAACAGGATGCGAAGGGGCTCCCCTTCTTCCTGTAATGTTTGTCATGATGAACAT 1061
Query 1419 GGCTTATAACATCTCTCTTCTACGCCTCATCAAGATTTCATCTGCAGTTGTGTCGTCTCT 1478
|||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1062 GGCTTACAACATCTCCCTTCTACGCCTTATCAAGATCTCATCTGCAGTTGTGTCGTCTCT 1121
Query 1479 GGCATCCACCGTTTCAGTGCCCATAGCGGTGTACTGTTTCACGCTTCCCCTACCATACCT 1538
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1122 GGCATCCACCGTTTCAGTGCCCATAGCGGTGTACTGTTTCACGCTTCCCCTACCGTACCT 1181
Query 1539 TGGGGTGGCATCTACACTACCAAGGGGGTTTGTTGCAGGCACAATCATCCTTGTAGTCGG 1598
|||||| ||||||||||| |||||||||||||||||||||||| ||||||| ||| ||||
Sbjct 1182 TGGGGTCGCATCTACACTTCCAAGGGGGTTTGTTGCAGGCACAGTCATCCTAGTACTCGG 1241
Query 1599 CATGCTTCTATATGCTTGGACACCATCTACTAACACTTCCGATTCAATTATCCCCTCACC 1658
||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 1242 CATGCTTCTATATGCTTGGACACCATCTACTAACACTTCCGATTCGATAATCCCCTTGCC 1301
Query 1659 CCCATCCACATAG 1671
||||||||| |||
Sbjct 1302 CCCATCCACCTAG 1314
Score = 459 bits (248), Expect = 4e-128
Identities = 377/433 (87%), Gaps = 34/433 (8%)
Strand=Plus/Plus
Query 148 ATGGCAACAACGAGCTCCGACCGGTTAATCGCCGGTTTAACGGCGTCGATCGGCTCAATC 207
||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGGCTACAACGAGCTCCGGCCGGTTAATCGCCGGTTCAACGGCGTCGATCGGCTCAATC 60
Query 208 GAATCTCGTTACGCAAATCCAGCTCAATCCGTTTCTC-TAATCTGTCGAAATCAAATCAA 266
|||| |||||||| |||||||||||||||||||| | |||||||||||||||||| |||
Sbjct 61 AAATCGCGTTACGCGAATCCAGCTCAATCCGTTTC-CATAATCTGTCGAAATCAAACCAA 119
Query 267 TGGCGCACCGCCTATCGT-CTTGCGGTCCTCTCGAAGGTCCAGGCTGTGGTTAATCGAGG 325
||| ||||| || ||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 120 TGGTGCACCTCCCATCGTCCTTG-GGTCCTCTCGAAGGTCCAGGCTGTGGTTAATCGAGG 178
Query 326 CGATTCCTCCGGCAAAGTCCTGGAACGGATCTAACGATGGCGACGAAGATATCAAGAAGT 385
||||||||||||| ||||||||| ||||||||||||||||||| | | | |
Sbjct 179 CGATTCCTCCGGCGAAGTCCTGGGACGGATCTAACGATGGCGA--A-G----C--G---- 225
Query 386 CAGACACTCGTAATTACGCGATCGGTGGAACCGGTGGTCACGCGGTCGCCGGAAAAGATG 445
| | | ||||||||||||||||| ||| | ||||||||||||||| |||
Sbjct 226 C-G----T---AATTACGCGATCGGTGG------TGG-C--GCGGTCGCCGGAAAACATG 268
Query 446 ACAGAACGATGGAGATAGTAATAGCAGCGGCGACCACGGCGGCGCTGGGTGTCGGGAATC 505
|||| |||||||||||||| |||||||||||||||||||||||| |||| ||||||||||
Sbjct 269 ACAGGACGATGGAGATAGTTATAGCAGCGGCGACCACGGCGGCGTTGGGGGTCGGGAATC 328
Query 506 GCGTACTGTATAAGCTGGCTCTTATTCCTCTCAAGCAATATCCCTTCTTCCTCGCGCAAC 565
||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 329 GCGTATTGTATAAACTGGCTCTTATTCCTCTCAAGCAATACCCCTTCTTCCTCGCGCAGC 388
Query 566 TCTCCACATTCGG 578
||||||| |||||
Sbjct 389 TCTCCACCTTCGG 401
> Ahg488059 jgi|Araly1|488059|fgenesh2_kg.6__1193__AT5G12170.2
Length=1617
Score = 662 bits (358), Expect = 0.0
Identities = 715/884 (81%), Gaps = 38/884 (4%)
Strand=Plus/Plus
Query 759 GTATGTAGCTGTATACTT-TTCGATTTTGTA-TTTCAGATACCGAGCTGGAATTGTTACA 816
||||||||||||||| || | | || ||||| |||| |||| || ||||||| ||| |||
Sbjct 524 GTATGTAGCTGTATA-TTATACTATCTTGTATTTTC-GATATCGTGCTGGAACTGTCACA 581
Query 817 AAAG-AGATGCTATCAGTTCCAAAACT-TCCATTTTTAATTGTTGGCGTCTTGGAGTCTC 874
| | | ||||| || || |||||| | ||||||||||||||||||| |||| ||| |||
Sbjct 582 GAGGCA-ATGCTCTCGGTGCCAAAA-TCTCCATTTTTAATTGTTGGCATCTTAGAGGCTC 639
Query 875 TTGCT-CTAGCTGCTGGGATGGCGGCCGCATCAAATCTTTCTGGACCATCTACTACAGTT 933
| ||| | ||||||||| ||||| |||||| | |||||||| || |||||||||||||||
Sbjct 640 TAGCTGC-AGCTGCTGGCATGGCAGCCGCAGCGAATCTTTCGGGGCCATCTACTACAGTT 698
Query 934 TTATCTCAGACATTTCTTGTCTGGCAAATTCTT-TTCTCCATTATATTTCTCGGGAGGAG 992
|||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 699 TTATCTCAGACATTTCTTGTCTGGCAAATT-TTCTTCTCCATTATTTTTCTCGGGAGGAG 757
Query 993 ATATAGAATAAATCAAATATTGGGATGTACTCTTGTAGCATTT-GGTGTAATCGTCAGTG 1051
|||||| |||| |||||| | ||||| ||||||||||| | | ||||||||||||||||
Sbjct 758 ATATAGCGTAAACCAAATACTCGGATGCACTCTTGTAGC-TCTCGGTGTAATCGTCAGTG 816
Query 1052 TAGCAAGTGGGTCGGGTGCCGCTCATTCATTTAAAGATA-CAGGAATACTT-TGGAGTCT 1109
| |||||||| || ||||| ||||||||||| || || | | ||| || || |||| |||
Sbjct 817 TGGCAAGTGGATCAGGTGCTGCTCATTCATTGAAGGA-AGCCGGAGTA-TTATGGATTCT 874
Query 1110 TCTTATGGTGTTTTCTTTTCT-GCTTCAAGGAGCAGATACAGTAATGAAGGAAGTCATCT 1168
||| | ||| | ||||| || |||||||||||||| ||||||| |||||||||||||||
Sbjct 875 TCTAACGGTCCTCTCTTT-CTTGCTTCAAGGAGCAGGTACAGTATTGAAGGAAGTCATCT 933
Query 1169 TTCTAGATAGCA-AAAAGCGATTGAAGGGTGCTTCACTTGATTTGTTTGTTGTAAACTCA 1227
|| |||||||| |||| ||||| |||||||||||||| ||| | ||| | ||||| |||
Sbjct 934 TTATAGATAGCCTAAAA-CGATTAAAGGGTGCTTCACTCGATCTATTTATAGTAAATTCA 992
Query 1228 TATGGTTCAATTTTCCAAGTCATATGCATTGCGTTGCTTCTTCCTTTTCTTTCAAAGCTT 1287
||||||||| |||||||| ||| |||||||||||||||||||| ||||||||||| |||
Sbjct 993 TATGGTTCAGCTTTCCAAGCCATCTGCATTGCGTTGCTTCTTCCATTTCTTTCAAAACTT 1052
Query 1288 TGGGGCATACCGTTTAACCAACTACCG-AGCTATATCAGAGACGGGGGTGCTTGCTTTCT 1346
||||||||||||||||||||||| | | | ||| | | ||| || | | |||||||||
Sbjct 1053 TGGGGCATACCGTTTAACCAACT-CGGTACCTACCTAAAAGATGGCGCAGTTTGCTTTCT 1111
Query 1347 AAAT-ATTGGTTCTAGAATAACAGGATGCGAAGGGGCTCCCCTTCTT-CCTGTAATGTTT 1404
|| | || | | || || |||||| || ||||| || || || ||| || |||||
Sbjct 1112 CAACCACGGGA-CAATAACAAAAGGATGTGATGGGGCACCGTTT-TTGCCTCTATTGTTT 1169
Query 1405 GTCATGATGAACAT-GGCTTATAACATCT-CTCTTCTACGCCTCATCAAGATTTCATCTG 1462
|| | |||||||| |||| ||||||| | ||||| || | ||| ||||||||||||| |
Sbjct 1170 GTGACAATGAACATTGGCT-ATAACAT-TGCTCTTTTAAGACTCCTCAAGATTTCATCGG 1227
Query 1463 CAGTTGTGTCGTCTCTGGCATCCACCGTTTCAGTGCCCATAGCGGTGTA-CTGTTTCACG 1521
| || || |||| ||| ||||| || ||||||||||| || || |||| ||||| |||
Sbjct 1228 CCGTGGTTTCGTGTCTTGCATCAACAGTTTCAGTGCCAATTGCAGTGTTTCTGTT-CACA 1286
Query 1522 CTTCCCCTACCATACCTTGGGGTGGCATC-TACACTACCAAGGGGGTTTGTTGCAGGCAC 1580
| || |||| |||||||| || ||||| | || |||||| ||||| | | ||| ||
Sbjct 1287 ATGCCATTACCGTACCTTGGAGTTGCATCAT-CATTACCAAAAGGGTTCATGGGAGGAAC 1345
Query 1581 AATCATCCTTGTAGTCGGCATGCTTCTATAT-GCTTGGACACCA 1623
| |||| |||||| | || ||| |||| || | ||||||||||
Sbjct 1346 AGTCATACTTGTATTGGGAATGATTCTTTACAG-TTGGACACCA 1388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70657404475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5