BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19410.1
Length=1875
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488830 jgi|Araly1|488830|fgenesh2_kg.6__1964__AT5G19410.1 2894 0.0
> Ahg488830 jgi|Araly1|488830|fgenesh2_kg.6__1964__AT5G19410.1
Length=1846
Score = 2894 bits (1567), Expect = 0.0
Identities = 1756/1849 (95%), Gaps = 6/1849 (0%)
Strand=Plus/Plus
Query 28 ATGGCTACAAGCCACCGCGAGGAAGACTCCATCATTCTTTTCTCAGCATCAAACTCTCCT 87
||||||||||||| |||||| |||||||||||||||||||||||| | ||||||||||||
Sbjct 1 ATGGCTACAAGCCGCCGCGAAGAAGACTCCATCATTCTTTTCTCATCCTCAAACTCTCCT 60
Query 88 GATGAATTCTCCTCTGCTTCCTCTTCCTTTTCTTCTTCACCACTCCCAACCCCTAACCGC 147
|||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||
Sbjct 61 GATGAATTCTCCTCTGCTTCCTCTTCATTTTCTTCTTCGCCACTCCCAAGCCCTAACCGC 120
Query 148 TACTCTTTAACCGTCACTAACCTATCCTACACCATCAATCACACCCCAATACTCAATTCC 207
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||
Sbjct 121 TACTCTTTAACCGTCACTAACCTCTCCTACACCATCCATCACACCCCAATACTCAAATCT 180
Query 208 GTTTCATTAGCTGCTGAATCCTCTAAAATCCTAGCCGTGGTTGGACCGAGTGGAACAGGA 267
|||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 181 GTTTCATTAGCTGCTGAATCCTCTAAAATCCTAGCCGTGGTTGGCCCTAGCGGAACAGGC 240
Query 268 AAATCCACTCTTTT-AAAGATCATTTCAGGAAGAGTGAACCACAAGGCACTAGATCCGTC 326
|||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 241 AAATCCACTCTTTTGAAA-ATCATTTCAGGAAGCGTGAACCACAAGGCACTGGATCCGTC 299
Query 327 TTCCGCGG-TTTTGATGAACAATCGTAAAATCACTGACTATAACCAACTACGAAGGCTAT 385
||||| || ||||||| |||||||||| ||| || ||||| || || ||||| |||||||
Sbjct 300 TTCCG-GGATTTTGATAAACAATCGTAGAATTACCGACTACAATCAGCTACGCAGGCTAT 358
Query 386 GCGGGTTTGTCCCGCAGGACGATGACCTACTGCCTCTACTTACCGTGAAAGAGACGTTAA 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GCGGGTTTGTCCCGCAGGACGATGACCTACTGCCTCTACTTACCGTGAAAGAGACGTTAA 418
Query 446 TGTATAGCGCCAAATTCAGTTTGAGAGATTCAACGGCTAAGGAAAGAGAAGAGAGAGTGG 505
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 419 TGTATAGCGCCAAATTCAGTTTGAGAGATTCAACGGCTAAGGAAAGAGAAGATAGAGTGG 478
Query 506 AGAGCTTGTTGAGTGATCTCGGTCTTGTTCTCGTCCAAGACAGCTTCGTGGGAGAAGGAG 565
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 479 AGAGCTTATTGAGTGATCTCGGTCTTGTTCTAGTCCAAGACAGCTTCGTTGGAGAAGGAG 538
Query 566 ACGAAGAGGATCGTGGCGTTTCGGGTGGAGAGAGGAAGAGAGTCTCTATAGCCGTTGAGA 625
|||| || |||||||| |||||||| ||||||||||||||||| || ||||| |||||||
Sbjct 539 ACGATGAAGATCGTGGTGTTTCGGGAGGAGAGAGGAAGAGAGTTTCAATAGCTGTTGAGA 598
Query 626 TGATTCGTGATCCACCAATTCTGCTTCTTGACGAACCAACCTCTGGTTTGGATAGTCGAA 685
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGATCCGTGATCCACCAATTCTGCTTCTTGACGAACCAACCTCTGGTTTGGATAGTCGAA 658
Query 686 ACTCGCTTCAGGTTGTTGAGCTTTTGGCTACTATGGCGAAATCCAAACAGAGAACCGTCC 745
||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 659 ACTCGCTCCAGGTCGTTGAGCTTTTGGCTACTATGGCAAAATCCAAACAGAGAACCGTCC 718
Query 746 TCTTCTCCATCCACCAACCAAGTTATAGGATCCTCGATTACATCTCCGATTACCTGATTC 805
| ||||||||||| |||||||| ||| | |||||||||||||||||||||||||||||||
Sbjct 719 TTTTCTCCATCCATCAACCAAGCTATCGAATCCTCGATTACATCTCCGATTACCTGATTC 778
Query 806 TTTCTCGCGGATCGGTTATCCACTTGGGAAGTCTTGAACATCTCGAGGACTCGATAGCGA 865
|||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 779 TTTCACGCGGATCGGTTATCTACTTGGGAAGTCTTGAACATCTCGAGGACTCAATAGCGA 838
Query 866 AACTAGGGTTTCAGATTCCAGAACAGCTGAATCCTATAGAATTCGCCATGGAAATAGTTG 925
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 839 AACTAGGGTTTCAGATTCCAGAACAGCTGAATCCGATAGAATTCGCCATGGAAATAGTTG 898
Query 926 AGTCCTTGAGAACTTTTAAGCCAAACTCGGTAGCTGTCGTAGAATCATCATCAATGTGGC 985
|||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 899 AGTCGTTGAGAACTTTTAAGCCAGACTCGGTAGCTGTCGTAGAATCATCATCGATGTGGC 958
Query 986 CTGAAAACAACGAAAACGATGGGATTATCTCTAAGAAAGAAGCGTTTCGTGTCCTAGACG 1045
|||||||||||||||| |||||||||||| | |||||||||| |||||||||||||||||
Sbjct 959 CTGAAAACAACGAAAATGATGGGATTATCACAAAGAAAGAAGAGTTTCGTGTCCTAGACG 1018
Query 1046 TCACCGAGATCTCATACCTCTGCTCAAGATTCTGCAAGATCATCTATAGAACAAAGCAGT 1105
|||||||||||||||| ||||| || || ||||||||||||||||| |||||||||||||
Sbjct 1019 TCACCGAGATCTCATATCTCTGTTCGAGGTTCTGCAAGATCATCTACAGAACAAAGCAGT 1078
Query 1106 TGTTCCTGGCGCGAACAATGCAAGCGGTTGTAGCTGGATTAGGTCTAGGTAGCGTCTACA 1165
| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 1079 TATTCCTGGCGCGAACAATGCAAGCGGTGGTAGCCGGATTAGGTCTAGGCAGCGTCTACA 1138
Query 1166 CAAGACTCAAGCGTGACGAAGAAGGCGTTGCAGAGCGGCTTGGACTCTTTGCCTTCAGCT 1225
|||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 1139 CAAGACTCAAGCGTGACGAAGAAGGCGTAGCAGAGCGGCTAGGGCTCTTTGCCTTCAGCT 1198
Query 1226 TAAGCTTCCTCCTCTCTTCAACAGTCGAAGCACTTCCCATTTACCTCCGAGAACGTCGCG 1285
||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||
Sbjct 1199 TAAGCTTCCTCCTCTCTTCCACAGTGGAAGCACTTCCCATATACCTCCGAGAACGTCGCG 1258
Query 1286 TTCTGATGAAAGAATCATCTCGTGGATCCTACCGAATCTCATCCTACATGATAGCCAACA 1345
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1259 TTCTGATGAAAGAATCATCTCGTGGATCCTACCGAATCTCATCCTACATGATCGCCAACA 1318
Query 1346 CCATCGCATTTGTACCGTTCCTCTTCGTTGTATCTCTCCTCTTCTCCATCCCAGTCTACT 1405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CCATCGCATTTGTACCGTTCCTCTTCGTTGTATCTCTCCTCTTCTCCATCCCAGTCTACT 1378
Query 1406 GGATCGTAGGCCTAAACCCATCGATTCAAGCCTTCTCCTTCTTTGTCCTCTGCGTCTGGC 1465
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 GGATCGTAGGCCTAAATCCATCGATTCAAGCCTTCTCCTTCTTTGTCCTCTGCGTCTGGC 1438
Query 1466 TCATCATTCTCATGGCCAGTTCTCTGGTGCTTTTCCTCAGCGCTGTTTCTCCTGACTTCA 1525
||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 1439 TCATCATTCTCATGGCCAGTTCTCTAGTGCTCTTCCTCAGCGCGGTTTCTCCTGACTTCA 1498
Query 1526 TCTCTGGTAACTCCCTCATATGCACTGTTCTTGGAGCCTTCTTCCTCTTCTCCGGCTACT 1585
|||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1499 TCTCCGGTAACTCCCTCATCTGCACCGTTCTTGGAGCCTTCTTCCTCTTCTCCGGCTACT 1558
Query 1586 TTATCCCAAAAGAGAAGATCCCAAAACCATGGATGTTCATGTACTATGTGTC-CTTGTAC 1644
||||||| |||||||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 1559 TTATCCCCAAAGAGAAGATCCCAAAACCATGGATGTTCATGTACTACGTGTCGCT-GTAC 1617
Query 1645 CGTTACCCGCTGGAGTCTATGGTGGTGAATGAGTACTGGAGCATGCGAGAGGAATGCTTC 1704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 CGTTACCCGCTGGAGTCTATGGTGGTGAATGAGTACTGGAGCATGCGAGAGGAATGCTTC 1677
Query 1705 TCCAGTGGGAACATGGGCTGCTTGATGACCGGAGAGGATGTGTTGAAGGAGAGAGGGCTT 1764
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 TCCAGCGGGAACATGGGCTGCTTGATGACCGGAGAGGATGTGTTGAAGGAGAGAGGGCTT 1737
Query 1765 GACAAGGATACGAGATGGATCAACGTCGGGATCATGCTTGCCtttttcgttttttATCGA 1824
||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 1738 GACAAGGATACGAGATGGATCAATGTCGGGATCATGCTTGCCTTCTTCGTTTTCTATCGA 1797
Query 1825 ATCCTCTGCTGGGGTATTCTACTCAGGAAGGCTTCCAAGTCAACCCATT 1873
|||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1798 ATCCTCTGCTGGGGGATTCTACTCAGAAAGGCTTCCAAGTCAACCCATT 1846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70428863005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5