BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19420.2
Length=3988
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488831 jgi|Araly1|488831|fgenesh2_kg.6__1965__AT5G19420.1 5603 0.0
Ahg940724 jgi|Araly1|940724|scaffold_601268.1 3415 0.0
> Ahg488831 jgi|Araly1|488831|fgenesh2_kg.6__1965__AT5G19420.1
Length=3774
Score = 5603 bits (3034), Expect = 0.0
Identities = 3346/3494 (96%), Gaps = 31/3494 (1%)
Strand=Plus/Plus
Query 436 GCTATCACTGCTCTTAAAAAAGGAGCTTATTTGCTTAAGTATGGCAGAAGGGGAAAGCCT 495
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 GCTATCACTGCCCTTAAGAAAGGAGCTTATTTGCTTAAGTATGGCAGAAGGGGAAAGCCT 368
Query 496 AAGTTCTGTCCATTTCGCCTTTCGAATGATGAATCTGTTTTGATATGGTTTTCTGGGAAG 555
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 369 AAGTTCTGTCCATTTCGCCTTTCAAATGATGAATCTGTTTTGATATGGTTTTCGGGGAAG 428
Query 556 GAGGAAAAACATTTGAAGCTAAGTCATGTTTCCAGGATCATCTCTGGGCAGCGCACTCCT 615
||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 429 GAGGAGAAACATTTGAAGCTAAGTCATGTCTCCAGGATCATATCTGGGCAGCGCACTCCT 488
Query 616 ATTTTTCAGAGATATCCACGTCCTGAGAAGGAATATCAATCGTTCTCGCTAATATATGAC 675
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 489 ATTTTTCAAAGATATCCACGTCCCGAGAAGGAATATCAATCGTTCTCACTAATATATGAC 548
Query 676 GAGAGGTCACTGGATTTGATATGCAAGGATAAAGATGAGGCTGAAGTGTGGTTTAGTGGT 735
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 549 GAGAGGTCACTGGATGTGATATGCAAAGATAAAGATGAGGCTGAAGTGTGGTTTAGCGGT 608
Query 736 CTAAAAGCCTTGATATCCCGTTGTCATCAACGGAAATGGAGGACCGAATCGAGAAGTGAT 795
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 TTAAAAGCCTTGATATCTCGTTGTCATCAACGGAAATGGAGGACCGAATCGAGAAGTGAT 668
Query 796 GGAACGCCATCCGAAGCTAATAGTCCGAGAACATATACCCGGAGAAGCTCCCCTTTACAT 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 GGAACGCCATCCGAAGCTAATAGTCCGAGAACATATACCCGGAGAAGCTCCCCTTTACAT 728
Query 856 TCTCCATTTAGTAGCAATGAAAGTTTCCAGAAGGAGGGCTCAAATCACCTTCGTCTTCAC 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 TCTCCATTTAGTAGCAATGAAAGTTTCCAGAAGGAGGGCTCAAATCACCTTCGTCTTCAC 788
Query 916 AGTCCATATGAGAGCCCGCCTAAGAATGGCGTTGACAAGGCATTTTCAGACATGTCGTTG 975
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 789 AGTCCATATGAGAGCCCGCCTAAGAATGGCATTGACAAGGCATTTTCAGACATGTCGTTG 848
Query 976 TATGCAGTTCCTCCAAAAGGTTTTTTCCCCCCAGGTTCGGCAACTATGTCAGTTCACTCT 1035
|||||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||||||
Sbjct 849 TATGCAGTTCCTCCAAAAGGTTTTTTTCCCCCAGATTCGGCAACCATGTCTGTTCACTCT 908
Query 1036 TTGTCATCTGGAGGCTCAGATACGCTACATGGTCACATGAAAGGAATGGGTATGGATGCT 1095
|| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 909 TTATCATCTGGAGGCTTAGATACACTACATGGTCACATGAAAGGAATGGGTATGGATGCT 968
Query 1096 TTTAGAGTTAGTCTGTCAAGTGCGATTAGTTCGTCGAGCCATGGTTCTGGTCATGATGAT 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 969 TTTAGAGTTAGTCTGTCAAGTGCGATTAGTTCGTCGAGCCATGGTTCTGGTCACGATGAT 1028
Query 1156 GGAGACACATTGGGAGACGTTTTCATGTGGGGAGAAGGAATAGGCGAAGGTGTTTTGGGT 1215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 GGAGACACATTGGGAGACGTTTTCATGTGGGGAGAAGGAATAGGCGAAGGTGTTTTGGGT 1088
Query 1216 GGTGGAAACCACAGAGTTGGAAGTTCGTTGGAGATCAAAATGGATTCCTTACTGCCAAAA 1275
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1089 GGTGGAAATTACAGAGTTGGAAGTTCGTTGGAGATCAAAATGGATTCCTTATTGCCAAAA 1148
Query 1276 GCTTTAGAGTCTACTATAGTACTTGATGTCCAGAATATTGCTTGCGGTGGACAACATGCT 1335
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1149 GCTTTAGAGTCTACTATAGTACTTGATGTACAGAATATTGCTTGTGGTGGACAACATGCT 1208
Query 1336 GTCCTTGTAACAAAACAAGGAGAAAGTTTTTCTTGGGGAGAGGAATCTGAAGGTAGGCTT 1395
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 GTCCTTGTGACAAAACAAGGAGAAAGTTTTTCTTGGGGAGAGGAATCTGAAGGTAGGCTT 1268
Query 1396 GGCCATGGTGTGGATTCCAATGTTCAACATCCAAAGCTCATTGATGCCCTCAATACCACA 1455
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1269 GGCCATGGTGTAGATTCCAATGTTCAACATCCAAAGCTCATTGATGCCCTCAGTACCACA 1328
Query 1456 AATATTGAGCTTGTAGCATGTGGTGAATACCATAGTTGTGCAGTTACTCTATCGGGGGAT 1515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 AATATTGAGCTTGTAGCATGTGGTGAATACCATAGTTGTGCAGTTACTCTATCGGGGGAT 1388
Query 1516 TTGTATACCTGGGGTAAAGGAGATTTTGGTATTCTGGGACATGGAAATGAAGTCAGTCAC 1575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 TTGTATACCTGGGGTAAAGGAGATTTTGGTATTCTGGGACATGGAAATGAAGTCAGTCAC 1448
Query 1576 TGGGTCCCCAAAAGAGTAAATTTTCTGATGGAAGGGATACATGTATCATCCATCGCTTGT 1635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1449 TGGGTCCCCAAAAGAGTAAATTTTCTGATGGAAGGGATACATGTATCATCCATCGCTTGT 1508
Query 1636 GGGCCTTACCACACAGCTGTTGTGACTTCCGCTGGGCAGTTGTTTACTTTTGGTGATGGG 1695
|| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1509 GGACCTTACCACACAGCTGTTGTGACTTCTGCTGGCCAGTTGTTTACTTTTGGTGATGGG 1568
Query 1696 ACCTTTGGTGTTTTGGGCCATGGAGACAGGAAAAGTGTTTTCATACCTAGAGAGGTAGAC 1755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1569 ACCTTTGGTGTTTTGGGCCATGGAGACAGGAAAAGTGTTTTCATACCTAGAGAGGTAGAC 1628
Query 1756 TCCTTGAAAGGTCTTCGCACTGTTCGGGCAGCCTGTGGTGTATGGCACACAGCCGCAGTT 1815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TCCTTGAAAGGTCTTCGCACTGTTCGGGCAGCCTGTGGTGTATGGCACACAGCCGCAGTT 1688
Query 1816 GTAGAAGTCATGGTTGGGAGCTCGAGCTCTAGTAACTGCTCTTCAGGAAAGCTCTTTACA 1875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1689 GTAGAAGTCATGGTTGGGAGCTCGAGCTCTAGTAACTGCTCTTCAGGAAAGCTCTTTACA 1748
Query 1876 TGGGGTGATGGTGACAAGAGTCGTCTTGGTCATGGTGACAAAGAACCAAAACTTGTGCCT 1935
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1749 TGGGGTGATGGTGACAAGAGTCGTCTTGGTCACGGTGACAAAGAACCAAAACTTGTGCCT 1808
Query 1936 ACCTGTGTTGCAGCTCTTGTAGAACCTAATTTTTGTCAAGTTGCGTGTGGACATAGCCTA 1995
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1809 ACCTGTGTTGCAGCTCTTGTAGAACCCAATTTTTGTCAAGTTGCGTGCGGACATAGCCTA 1868
Query 1996 ACAGTTGCACTTACAACATCGGGCCACGTCTATACTATGGGCAGTCCTGTTTATGGTCAG 2055
||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1869 ACAGTTGCACTGACAACATCGGGCCATGTCTATACTATGGGTAGTCCTGTTTATGGTCAG 1928
Query 2056 CTTGGAAACCCACATGCAGATGGAAAGGTTCCAACCCGTGTCGACGGCAAACTTCACAAG 2115
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 1929 CTTGGAAACCCACATGCAGATGGAAAGGTTCCAACCCGTGTTGAAGGTAAACTTCACAAG 1988
Query 2116 AGTTTTGTCGAAGAGATTGCTTGCGGTGCTTATCATGTTGCAGTTTTAACTTCAAGGACT 2175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1989 AGTTTTGTCGAAGAGATTGCTTGCGGTGCTTATCATGTTGCAGTTTTAACTTCAAGGACT 2048
Query 2176 GAGGTTTACACTTGGGGAAAAGGATCAAATGGTAGACTAGGCCATGGGGATGCAGATGAT 2235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2049 GAGGTTTACACTTGGGGAAAAGGATCAAATGGTAGACTAGGCCATGGGGATGCAGATGAT 2108
Query 2236 CGAAATTCCCCCACATTGGTTGAGTCGCTGAAGGATAAACAGGTGAAAAGTATTGCATGT 2295
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2109 CTAAATTCCCCGACATTGGTTGAGTCGCTGAAGGATAAACAGGTGAAAAGTATTGCCTGT 2168
Query 2296 GGTTCTAACTTCACCGCAGCTGTCTGTCTTCACAAGTGGGCATCAGGGATGGACCAGTCC 2355
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 2169 GGTTCTAACTTCACCGCAGCTGTTTGCCTTCACAAGTGGGCATCAGGGATGGACCAGTCC 2228
Query 2356 ATGTGTTCAGGTTGCCGTCAGCCTTTCAATTTCAAGAGAAAGCGGCACAATTGCTATAAC 2415
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2229 ATGTGTTCAGGTTGCCGTCAGCCTTTCAATTTCAAGAGAAAGCGGCACAATTGTTATAAC 2288
Query 2416 TGTGGACTTGTGTTTTGCCATTCTTGCAGTAATAAAAAGTCCCTGAAGGCTTGTATGGCA 2475
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2289 TGTGGACTTGTGTTTTGCCATTCTTGCACTAATAAAAAGTCCCTGAAGGCTTGTATGGCA 2348
Query 2476 CCAAACCCTAACAAACCATATCGAGTGTGTGATAGGTGTTTCAACAAATTGAAAAAGGCC 2535
|| ||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 2349 CCGAACCCGAACAAACCATATAGAGTGTGTGATAGGTGTTTCAATAAATTGAAAAAGGCC 2408
Query 2536 ATGGAAACGGATCCATCATCTCATTCTTCTTTGAGTCGAAGAGAAAGTGTCAACCAAGGA 2595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2409 ATGGAAACGGATCCATCATCTCATTCTTCTTTGAGTCGAAGAGAAAGTGTCAACCAAGGA 2468
Query 2596 TCAGATGCAATTGACAGAGATGAGAAGTTGGATACTAGATCCGACGGACAGCTAGCTAGA 2655
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2469 TCAGATGCAATTGACAGAGATGAGAAGTTGGATACTAGATCTGACGGACAGCTAGCTAGA 2528
Query 2656 TTCTCATTGTTGGAGCCCATGAGGCAAGTGGACAGTCGATCCAAGAAAAATAAGAAATAT 2715
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2529 TTCTCATTGTTGGAGCCCATGAGGCAAGTGGACAGTCGTTCCAAGAAAAATAAGAAATAT 2588
Query 2716 GAATTCAATAGTAGTCGTGTCTCACCAATACCGAGTGGGGGCTCGCACCGGGGTTCACTA 2775
|||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 2589 GAATTCAATAGTAGTCGTGTCTCACCAATACCAAGTGGAGGCTCTCACCGGGGTTCACTA 2648
Query 2776 AACATAACCAAGTCTTTTAATCCAACTTTCGGATCATCAAAGAAA-TTCTTCTCAGCTTC 2834
|||||||||||||||||||| ||||| |||||||||||||| ||| ||||||||||| ||
Sbjct 2649 AACATAACCAAGTCTTTTAACCCAACCTTCGGATCATCAAA-AAAGTTCTTCTCAGCATC 2707
Query 2835 AGTTCCTGGTTCCCGAATTGCGTCCCGGGCAACTTCACCAATATCAAGACGTCCTAGCCC 2894
|||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||
Sbjct 2708 AGTTCCTGGTTCCCGAATTGTGTCTCGAGCAACTTCACCAATATCAAGACGTCCTAGCCC 2767
Query 2895 ACCTCGGTCAACAACGCCAACTCCCACTCTTTCAGGACTAACTACACCAAAAATTGTCGT 2954
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2768 ACCTCGCTCAACAACGCCAACTCCCACTCTTTCAGGACTAACTACACAAAAAATTGTCGT 2827
Query 2955 GGATGATACCAAGAGAAGCAATGATAACCTAAGCCAAGAGGTGGTTATGCTAAGATCTCA 3014
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 2828 GGATGATACCAAGAGAACCAATGATAACCTAAGCCAGGAGGTGGTTATGCTAAGATCTCA 2887
Query 3015 AGTTGAAAATCTTACACGGAAGGCACAACTTCAAGAAGTTGAACTGGAAAGAACAACCAA 3074
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 2888 AGTTGAAAATCTTACACGGAAGGCACAGCTTCAAGAAGTTGAATTGGAAAGAACAACCAA 2947
Query 3075 ACAGCTAAAGGAGGCACTAGCAATTGCTAGTGAAGAATCAGCGAGATGCAAGGCAGCAAA 3134
|||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||
Sbjct 2948 ACAGCTAAAGGAGGCACTAGCAATCGCTAGCGAAGAATCAGCAAGATGCAAGGCAGCGAA 3007
Query 3135 AGAAGTGATCAAATCACTTACCGCTCAATTGAAAGACATGGCTGAAAGACTACCTGTTGG 3194
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3008 AGAAGTGATTAAATCACTTACCGCTCAATTGAAAGACATGGCTGAAAGACTACCTGTTGG 3067
Query 3195 ATCAGCTCGGACTGTCAAGTCTCCGTCTCTCAATTCATTTGGTTCCAGTCCTGATTACGC 3254
||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 3068 ATCAGCTCGGACTATCAAGTCTCCTTCTCTTAATTCATTTGGTTCCAGTCCTGATTACGT 3127
Query 3255 TGCCCCTTCTTCTAACACCTTAAACCGTCCAAACAGTCGAGAAACTGATTCTGATAGCCT 3314
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 3128 TGCCCCTTCTTCTAACACCTTAAACCGTCCAAACAGCCGAGAAACTGATTCTGAGAGCCC 3187
Query 3315 AACCACCGTCCCAATGTTTTCAAATGGGACCAGCACACCTGTTTTCGATAGTGGAAGTTA 3374
|| ||||||||||||||||| || |||||||||||||||||||||||||||| ||||||
Sbjct 3188 AATGACCGTCCCAATGTTTTCCAACGGGACCAGCACACCTGTTTTCGATAGTGCAAGTTA 3247
Query 3375 CCGACAGCAAGCTAATCATGCTGCTGAAGCGATAAATAGAATCAGCACACGATCAAAAGA 3434
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 3248 CCGACAGCAAGCTAATCATGCTGCTGATGCAATAAATAGAATCAGCACACGATCAAAAGA 3307
Query 3435 AAGTGAACCCCGTAACGAAAATGAATGGGTTGAACAAGATGAACCTGGTGTGTACATCAC 3494
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 3308 AAGTGAACCCCGTAACGAGAAGGAATGGGTTGAACAAGATGAACCTGGTGTGTACATCAC 3367
Query 3495 TCTCACAGCCTTAGCTGGAGGTGCAAGGGATCTCAAACGTGTCCGTTTCAGCCGGAAGCG 3554
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3368 TCTCACAGCCTTAGCTGGAGGTGCAAGGGATCTCAAACGTGTCCGTTTCAGTCGGAAGCG 3427
Query 3555 GTTTAGTGAGAAACAAGCAGAAGAATGGTGGGCAGAGAACAGAGGAAGAGTTTACGAACA 3614
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3428 GTTTAGCGAGAAACAAGCAGAAGAATGGTGGGCAGAGAACAGAGGAAGAGTTTACGAACA 3487
Query 3615 ATACAATGTACGCATAGTAGTTGATAAATCCAGTGTGGGTGTAGGAAGTGAAGACTTGGG 3674
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 3488 ATACAATGTACGCATAGTCGTTGATAAATCCAGTGTGGGTGTAGGGAGTGAAGACTTGGG 3547
Query 3675 TCATTAATATTCTTCGCTAACCCC--TGATAACACAGAAAACCCTGAGTTTCCCACTCAT 3732
|||||| ||||||| | | ||||| | ||||||||||||||| |||||||||||||||
Sbjct 3548 TCATTAGTATTCTTTGTTTACCCCAAT-ATAACACAGAAAACCG-GAGTTTCCCACTCAT 3605
Query 3733 CTATTCTTTTTTAGTTTCTGTCTACGGGTTTCATAGGTTTATTTGGGGATTATAACCAAG 3792
|||||||||||| | | | | |||||||||||||||||||| ||||||| ||||||||
Sbjct 3606 CTATTCTTTTTTTGGT-CAA-C-ACGGGTTTCATAGGTTTATT-GGGGATTTTAACCAAG 3661
Query 3793 AGAGAAAATAGTTTTCATCATAGTTTGGGTGTTTTTCATATGTAAATTCTTTTGTAAATT 3852
|||||||||||||||||| || | | | | | ||||||||||||||
Sbjct 3662 AGAGAAAATAGTTTTCAT----GT--G--T-------A-A---A--TTCTTTTGTAAATT 3700
Query 3853 CCACAAGCATACATTGTTTCGTTCTTTGTCTCGATAAATGTTATTATTTGATGTTGAAAT 3912
| | || ||||||||||||| |||||| |||| ||||||| ||||||||| ||| |||||
Sbjct 3701 CTATAAACATACATTGTTTCTTTCTTTCTCTCTATAAATGCTATTATTTGCTGTGGAAAT 3760
Query 3913 TCAAACAGCATTAA 3926
|||||||||| |||
Sbjct 3761 TCAAACAGCACTAA 3774
> Ahg940724 jgi|Araly1|940724|scaffold_601268.1
Length=3271
Score = 3415 bits (1849), Expect = 0.0
Identities = 2584/2939 (88%), Gaps = 50/2939 (2%)
Strand=Plus/Plus
Query 436 GCTATCACTGCTCTTAAAAAAGGAGCTTATTTGCTTAAGTATGGCAGAAG-GGGAAAGCC 494
||||||| ||| || ||||| || ||||| ||||| |||||||| ||||| |||||| ||
Sbjct 90 GCTATCATTGCCCTGAAAAAGGGTGCTTACTTGCTAAAGTATGGGAGAAGAGGGAAA-CC 148
Query 495 TAAGTTCTGTCCATTTCGCCTTTCGAATGATGAATCTGTTTTGATATGGTTTTCTGGGAA 554
||||||||| |||||||||||||| ||||||||| |||||||||||||||| ||||| ||
Sbjct 149 TAAGTTCTGCCCATTTCGCCTTTCTAATGATGAAACTGTTTTGATATGGTTCTCTGGAAA 208
Query 555 GGAGGAAAAACATTTGAAGCTAAGTCATGTTTCCAGGATCATCTCTGGGCAGCGCACTCC 614
||||| |||||| ||||||| || |||||||| |||||||| ||||| || ||||||||
Sbjct 209 CGAGGAGAAACATCTGAAGCTGAGCCATGTTTCTAGGATCATATCTGGACAACGCACTCC 268
Query 615 TATTTTTCAGAGATATCCACGTCCTGAGAAGGAATATCAATCGTTCTCGCTAATATATGA 674
|||||||||||| ||||| ||||| |||||||||||||| ||||| || ||||||||| |
Sbjct 269 TATTTTTCAGAGGTATCCTCGTCCCGAGAAGGAATATCAGTCGTTTTCACTAATATAT-A 327
Query 675 -CGAGAGGTCACTGGATTTGATATGCAAGGATAAAGATGAGGCTGAAGTGTGGTTTAGTG 733
|||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 328 GTGAGAGGTCTTTGGATTTGATATGCAAGGATAAAGATGAGGCTGAGGTGTGGTTTACTG 387
Query 734 GTCTAAAAGCCTTGATATCCCGTTGTCATCAACGGAAA-TGGAGGACCGAATCGAGAAGT 792
|||| || |||||||| || | ||| |||||| |||| |||| || ||||| ||||||
Sbjct 388 GTCTTAAGGCCTTGATTTCGCATTGCCATCAA-AGAAACAGGAGAACTGAATCAAGAAGT 446
Query 793 GATGGAACGCCATCCGAAGCTAATAGTCCGAGAACATATACCCGGAGAAGCTCCCCTTTA 852
|| || || ||||| ||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 447 GACGGTACACCATCTGAAGCTAATAGCCCAAGAACATATACCCGGAGAAGCTCTCCTTTA 506
Query 853 CATTCTCCATTTAGTAGCAATGAAAGTTTCCAGAAGGAGGGCTCAAATCACCTTCGTCTT 912
||||||||||||||||||||||| ||||| |||||||| || || |||||||||||| ||
Sbjct 507 CATTCTCCATTTAGTAGCAATGACAGTTTGCAGAAGGATGGTTCTAATCACCTTCGTATT 566
Query 913 CACAGTCCATATGAGAGCCCGCCTAAGAAT-GGCGTTGACAAGGCATTTTCAGACATGTC 971
|| ||||||| ||||||||| ||||||||| ||| |||||||||||||||| |||||| |
Sbjct 567 CATAGTCCATTTGAGAGCCCACCTAAGAATGGGC-TTGACAAGGCATTTTCGGACATGGC 625
Query 972 GTTGTATGCAGTTCCTCCAAAAGGTTTTTTCCCCCCAGGTTCGGCAACTATGTCAGTTCA 1031
|| |||||||||||||||||||| |||| |||| ||| ||| |||||||| || |||||
Sbjct 626 ATTATATGCAGTTCCTCCAAAAGGATTTTACCCCTCAGATTCTGCAACTATTTCTGTTCA 685
Query 1032 CTCTTTGTCATCTGGAGGCTCAGATACGC-TACATGGTCACATGAAAGGAATGGGTATGG 1090
| ||||||||||| |||| || | ||||| || |||| || ||||| ||||
Sbjct 686 -------T--TCTGGAGGCTCGGATA-GCATGCATGGACATATGAGGGGTATGGGGATGG 735
Query 1091 ATGCTTTTAGAGTTAGTCTGTCAAGTGC-GATTAGTTCGTCGAGCCATGGTTCTGGTCAT 1149
||||||||||||||||| |||||||||| | ||||||| |||||||| ||||||||||||
Sbjct 736 ATGCTTTTAGAGTTAGTATGTCAAGTGCTG-TTAGTTCCTCGAGCCACGGTTCTGGTCAT 794
Query 1150 GATGATGGAGACACATTGGGAGACGTTTTCATGTGGGGAGAAGGAATAGGCGAAGGTGTT 1209
||||||||||| | || ||||| |||||||| ||||||||||| ||||| |||||||||
Sbjct 795 GATGATGGAGATGCGTTAGGAGATGTTTTCATCTGGGGAGAAGGCATAGGAGAAGGTGTT 854
Query 1210 TTGGGTGGTGGAAACCACAGAGTTGGAAGTTCGTTGGAGATCAAAATGGATTCCTTACTG 1269
|||||||||||||||| ||||||||||||||||| || || ||||||||||||||| ||
Sbjct 855 TTGGGTGGTGGAAACCGTAGAGTTGGAAGTTCGTTTGACATGAAAATGGATTCCTTATTG 914
Query 1270 CCAAAAGCTTTAGAGTCTACTATAGTACTTGATGTCCAGAATATTGCTTGCGGTGGACAA 1329
|||||||||||||| ||| | |||||||| || ||||| ||||||||||| |||||||||
Sbjct 915 CCAAAAGCTTTAGAATCTGCAATAGTACTGGACGTCCAAAATATTGCTTGTGGTGGACAA 974
Query 1330 CATGCTGTCCTTGTAACAAAACAAGGAGAAAGTTTTTCTTGGGGAGAGGAATCTGAAGGT 1389
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 CACGCTGTCCTTGTGACAAAACAAGGAGAAAGTTTTTCTTGGGGAGAGGAATCTGAAGGC 1034
Query 1390 AGGCTTGGCCATGGTGTGGATTCCAATGTTCAACATCCAAAGCTCATTGATGCCCTCAAT 1449
||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||| |||||
Sbjct 1035 AGGCTTGGCCACGGTGTTGATTCCAATATTCAACAACCAAAGCTCATTGATGCACTCAAC 1094
Query 1450 ACCACAAATATTGAGCTTGTAGCATGTGGTGAATACCATAGTTGTGCAGTTACTCTATCG 1509
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 1095 ACCACAAATATTGAGCTTGTAGCATGTGGTGAATTTCATAGTTGTGCGGTTACCCTATCA 1154
Query 1510 GGGGATTTGTATACCTGGGGTAAAGGAGATTTTGGTATTCTGGGACATGGAAATGAAGTC 1569
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 1155 GGGGATTTGTATACCTGGGGTAAAGGAGATTTTGGTGTTCTTGGACATGGAAATGAAGTC 1214
Query 1570 AGTCACTGGGTCCCCAAAAGAGTAAATTTTCTGATGGAAGGGATACATGTATCATCCATC 1629
|||||||||||||| || || || ||||||||| |||||||||||||||||||||||||
Sbjct 1215 AGTCACTGGGTCCCTAAGAGGGTTAATTTTCTGCTGGAAGGGATACATGTATCATCCATT 1274
Query 1630 GCTTGTGGGCCTTACCACACAGCTGTTGTGACTTCCGCTGGGCAGTTGTTTACTTTTGGT 1689
|||||||| |||||||||||||| || || || || |||||||||||||||||||||||
Sbjct 1275 GCTTGTGGACCTTACCACACAGCAGTCGTTACATCTGCTGGGCAGTTGTTTACTTTTGGG 1334
Query 1690 GATGGGACCTTTGGTGTTTTGGGCCATGGAGACAGGAAAAGTGTTTTCATACCTAGAGAG 1749
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||
Sbjct 1335 GATGGGACCTTTGGTGTTTTGGGCCATGGAGACAAGAAAAGTGTTTTCATACCTCGGGAG 1394
Query 1750 GTAGACTCCTTGAAAGGTCTTCGCACTGTTCGGGCAGCCTGTGGTGTATGGCACACAGCC 1809
|||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1395 GTAGACTCTTTGAAAGGTCTTCGCACTGTCCGGGCAGCTTGTGGTGTATGGCACACAGCA 1454
Query 1810 GCAGTTGTAGAAGTCATGGTTGGGAGCTCGAGCTCTAGTAACTGCTCTTCAGGAAAGCTC 1869
|||||||| |||||||||||||||||||| ||||| ||||| |||||||| |||||||||
Sbjct 1455 GCAGTTGTGGAAGTCATGGTTGGGAGCTCAAGCTCAAGTAATTGCTCTTCTGGAAAGCTC 1514
Query 1870 TTTACATGGGGTGATGGTGACAAGAGTCGTCTTGGTCATGGTGACAAAGAACCAAAACTT 1929
||||||||||| |||||||| ||| ||||||||||||||||| | |||||||||||||||
Sbjct 1515 TTTACATGGGGGGATGGTGATAAGGGTCGTCTTGGTCATGGTAATAAAGAACCAAAACTT 1574
Query 1930 GTGCCTACCTGTGTTGCAGCTCTTGTAGAACCTAATTTTTGTCAAGTTGCGTGTGGACAT 1989
||||||||||||||||| |||||||| ||||| |||||||| |||||||| ||||| ||
Sbjct 1575 GTGCCTACCTGTGTTGCTGCTCTTGTTGAACCCAATTTTTGCCAAGTTGCATGTGGGCAC 1634
Query 1990 AGCCTAACAGTTGCACTTACAACATCGGGCCACGTCTATACTATGGGCAGTCCTGTTTAT 2049
|| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 1635 AGTCTAACGGTTGCACTTACAACATCAGGCCATGTCTATACTATGGGCAGTCCTGTATAT 1694
Query 2050 GGTCAGCTTGGAAACCCACATGCAGATGGAAAGGTTCCAACCCGTGTCGACGGCAAACTT 2109
||||||||||||||| |||||||||||||||| |||||| ||||||||| || ||||||
Sbjct 1695 GGTCAGCTTGGAAACTCACATGCAGATGGAAAACTTCCAAACCGTGTCGAAGGTAAACTT 1754
Query 2110 CACAAGAGTTTTGTCGAAGAGATTGCTTGCGGTGCTTATCATGTTGCAGTTTTAACTTCA 2169
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1755 CACAAGAGTTTTGTCGAAGAGATAGCCTGCGGTGCTTATCATGTTGCAGTTTTAACTTCG 1814
Query 2170 AGGACTGAGGTTTACACTTGGGGAAAAGGATCAAATGGTAGACTAGGCCATGGGGATGCA 2229
|||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||| |
Sbjct 1815 AGGACTGAGGTTTACACTTGGGGAAAGGGATCAAATGGTAGACTTGGTCATGGAGATGTA 1874
Query 2230 GATGATCGAAATTCCCCCACATTGGTTGAGTCGCTGAAGGATAAACAGGTGAAAAGTATT 2289
|||||| |||||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1875 GATGATAGAAATTCCCCGACATTGGTTGAGTCGCTTAAGGATAAACAGGTTAAAAGTATT 1934
Query 2290 GCATGTGGTTCTAACTTCACCGCAGCTGTCTGTC-TTCACAAG-TGGGCATCAGGGATGG 2347
|| ||||| |||||||||| ||||||||||| | ||||| || ||||||||||||||||
Sbjct 1935 GCCTGTGGCACTAACTTCACAGCAGCTGTCTG-CATTCAC-AGATGGGCATCAGGGATGG 1992
Query 2348 ACCAGTCCATGTGTTCAGGTTGCCGTCAGCCTTTCAATTTCAAGAGAAAGCGGCACAATT 2407
||||||||||||||||||||||||||||||| |||| ||| || |||||| | |||||||
Sbjct 1993 ACCAGTCCATGTGTTCAGGTTGCCGTCAGCCCTTCAGTTTTAAAAGAAAGAGACACAATT 2052
Query 2408 GCTATAACTGTGGACTTGTGTTTTGCCATTCTTGCAGTAATAAAAAGTCCCTGAAGGCTT 2467
||||||| || ||||| ||||||||||| || ||| || ||||||||| |||||||||
Sbjct 2053 GCTATAATTGCGGACTAGTGTTTTGCCACTCATGCTCTAGTAAAAAGTCGTTGAAGGCTT 2112
Query 2468 GTATGGCACCAAACCCTAACAAACCATATCGAGTGTGTGATAGGTGTTTCAACAAATTGA 2527
|||||||||| ||||| ||||||||||||||||||||||| | |||||| ||||||||||
Sbjct 2113 GTATGGCACCGAACCCAAACAAACCATATCGAGTGTGTGACAAGTGTTTTAACAAATTGA 2172
Query 2528 AAAAGGCCATGGAAACGGATCCATCATCTCATTCTTCTTTGAGTCGAAGAGAAAGTGTCA 2587
||||| | |||||||| |||||||| |||||||||||| ||||| |||||| ||| | |
Sbjct 2173 AAAAGACGATGGAAACAGATCCATCGTCTCATTCTTCTCTGAGTAGAAGAGGAAGCATTA 2232
Query 2588 ACCAAGGATCAGATGCAATTGACAGAGATGAGAAGTTGGATACTAGATCCGACGGACAGC 2647
|||| ||||||||| | ||||||| |||||| ||||| ||| |||||||||| ||||||
Sbjct 2233 ACCAGGGATCAGATCCCATTGACAAAGATGACAAGTTCGATTCTAGATCCGATGGACAGT 2292
Query 2648 TAGCTAGATTCTCATTGTTGGAGCCCATGAGGCAAGTGGACAGTCGATCCAAGAAAAATA 2707
|||||||||| |||||| ||||| ||||||| |||||||||||||||| ||||| || |
Sbjct 2293 TAGCTAGATTTTCATTGATGGAGTCCATGAGACAAGTGGACAGTCGATATAAGAAGAACA 2352
Query 2708 AGAAATATGAATTCAATAGTAGTCGTGTCTCACCAATACCGAGTGGGGGCTCGCACCGGG 2767
|||||||||||||||||||||| |||||||| || ||||| ||||| |||| || ||||
Sbjct 2353 AGAAATATGAATTCAATAGTAGCCGTGTCTCGCCTATACCTAGTGGAAGCTCTCAACGGG 2412
Query 2768 GTTCACTAAACATAACCAAGTCTTTTAATCCAACT-TTCGGATCATCAAAGAAATTCTTC 2826
|| | || |||||| |||||||||| ||||| | | || ||| |||||||||| ||||||
Sbjct 2413 GTGCGCTTAACATAGCCAAGTCTTTCAATCC-AGTATTTGGAGCATCAAAGAAGTTCTTC 2471
Query 2827 TCAGCTTCAGTTCCTGGTTCCCGAATTGCGTCCCGGGCAACTTCACCAATATCAAGACGT 2886
|||||||| ||||||||||| ||||||| ||| ||||||||||| |||||||| ||||||
Sbjct 2472 TCAGCTTCTGTTCCTGGTTCTCGAATTGTGTCTCGGGCAACTTCCCCAATATCGAGACGT 2531
Query 2887 CCTAGCCCACCTCGGTCAACAACGCCAACTCCCACTCTTTCAGGACTAACTACACCAAAA 2946
||||| ||||| |||||||| || ||||||||||||||||| |||||| | |||||||||
Sbjct 2532 CCTAGTCCACCCCGGTCAACTACACCAACTCCCACTCTTTCGGGACTAGCCACACCAAAA 2591
Query 2947 ATTGTCGTGGATGATACCAAGAGAAGCAATGATAACCTAAGCCAAGAGGTGGTTATGCTA 3006
|||| ||||||||||| ||||||| |||||||||||||||||||||||| |||| ||||
Sbjct 2592 TTTGTTGTGGATGATACTAAGAGAACCAATGATAACCTAAGCCAAGAGGTTGTTAAGCTA 2651
Query 3007 AGATCTCAAGTTGAAAATCTTACACGGAAGGCACAACTTCAAGAAGTTGAACTGGAAAGA 3066
|||||||| ||||||| ||||||| ||||||| || |||||||||||||| |||||||||
Sbjct 2652 AGATCTCAGGTTGAAAGTCTTACAAGGAAGGCCCAGCTTCAAGAAGTTGAGCTGGAAAGA 2711
Query 3067 ACAACCAAACAGCTAAAGGAGGCACTAGCAATTGCTAGTGAAGAATCAG-CGAGATGCAA 3125
||| |||| |||||||| ||||| ||||||| |||| ||||||| | | ||||||||||
Sbjct 2712 ACAGCCAAGCAGCTAAAAGAGGCGTTAGCAATCGCTAATGAAGAAAC-GACGAGATGCAA 2770
Query 3126 GGCAGCAAAAGAAGTGATCAAATCACTTACCGCTCAATTGAAAG-ACATGGCTGAAAGAC 3184
||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||
Sbjct 2771 GGCAGCAAAAGAAGTGATCAAATCACTTACCGCTCAATT-AAAGGACATGGCCGAAAGAT 2829
Query 3185 TACCTGTTGGATCAGCTCGGACTGTCAAGTCTCCGTC-T-CTC--AATTCATTTGGTTCC 3240
|||| |||||||||||||||||||| |||||||| || | ||| |||||||||||||||
Sbjct 2830 TACCCGTTGGATCAGCTCGGACTGTGAAGTCTCC-TCCTTCTCTTAATTCATTTGGTTCC 2888
Query 3241 AGTCCTGATTACGC-T-GCCCCTTCTTCTAACACCTTAAACCGTCCAAACAGTCGAGAAA 3298
|| |||| | ||| | | ||||| || || | |||||||| ||||| || | ||||
Sbjct 2889 AGCCCTGGT--CGCATTGACCCTT-TT--AATATCTTAAACCAACCAAATAGCCAAGAAT 2943
Query 3299 CTGATTCTGATAGCCT-AACCACCGTCCCAATGTTTTCAAATGGGACCA-GCACACCTG 3355
| || | || || | || || | || ||||||||| |||||||||| | |||||||
Sbjct 2944 CCGAGCCAAATGGCATTAAT-AC-G-CC-AATGTTTTCTAATGGGACCATG-ACACCTG 2997
Score = 244 bits (132), Expect = 3e-63
Identities = 180/203 (89%), Gaps = 3/203 (1%)
Strand=Plus/Plus
Query 3447 TAACGAAAATGAATGGGTTGAACAAGATGAACCTGGTGTGTACATCACTCTCACAGCCTT 3506
|||||| || ||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 3032 TAACGAGAAGGAATGGGTTGAACAAGATGAACCTGGTGTCTATATCACTCTTACAGCCTT 3091
Query 3507 AGCTGGAGGTGCAAGGGATCTCAAACGTGTCCGTTTCAGCCGGAAGCGGTTTAGTGAGAA 3566
||| |||||||| || ||||||||||| |||||||||||||| || |||||||||||||
Sbjct 3092 AGCCGGAGGTGCTAGAGATCTCAAACGCGTCCGTTTCAGCCGAAAAAGGTTTAGTGAGAA 3151
Query 3567 ACAAGCAGAAGAATGGTGGGCAGAGAACAGAGGAAGAGTTTACGAACAATACAATGTACG 3626
|||||||||| | ||||||||||| |||||||||||||| || |||||||||||||| ||
Sbjct 3152 ACAAGCAGAACAGTGGTGGGCAGATAACAGAGGAAGAGTCTATGAACAATACAATGTTCG 3211
Query 3627 CATAGTAGTTGATAAATCCAGTG 3649
||| | ||||| ||| ||||||
Sbjct 3212 CAT-G--GTTGACAAAGCCAGTG 3231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 150746046653
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5