BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19430.1
Length=1156
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488832 jgi|Araly1|488832|fgenesh2_kg.6__1966__AT5G19430.1 1410 0.0
Ahg488075 jgi|Araly1|488075|fgenesh2_kg.6__1209__AT5G12310.1 483 2e-135
> Ahg488832 jgi|Araly1|488832|fgenesh2_kg.6__1966__AT5G19430.1
Length=949
Score = 1410 bits (763), Expect = 0.0
Identities = 837/874 (96%), Gaps = 0/874 (0%)
Strand=Plus/Plus
Query 151 TTTTTCTATCTAATTTCGCCGCCATGAGTTCCGTTACCGAGATCGTGTCTGAGCAGCAAG 210
||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 TTTTTCTATTTAGTTTCGCCGCCATGAGTTCCGTTACCGAGATCGCGTCTGAGCAGCAAG 60
Query 211 TGATCGACGGTATTCAGGATTTGGCCCTTCAAAATCAGGACAAAAAGAAGATCCAGGAAG 270
||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||
Sbjct 61 TGATCGACGGTATTCAGGATTTGTCTCTTCAAAATCAGGACAAAAAGAAAATCCAGGAAG 120
Query 271 AGATCCATGAGCCGAGTTTCGGGAATCATGGTGGCTGTTGTGCAATATGTTTGAGTGAAA 330
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 AGATCCATGAGCCGAGTTTCGGGAATCATGGTGGCTGTTGTGCTATATGTTTGAGTGAAA 180
Query 331 TTCCTCTTCAAGAAACTGCTATGGTCAAAGGCTGTGAACACACTTACTGTGTGACATGCA 390
|||||||||| |||||||||||||| |||||||||||||||| ||||||||| |||||||
Sbjct 181 TTCCTCTTCAGGAAACTGCTATGGTGAAAGGCTGTGAACACATTTACTGTGTCACATGCA 240
Query 391 TACTTCGTTGGGCGAGTTGCAAAGAGAGTCCCACATGCCCACAATGTAAGCATCCATTTG 450
||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 241 TACTTCGTTGGGCGAGTTGCAAAGAGAGTCCTACATGCCCGCAATGTAAGCATCCTTTTG 300
Query 451 ATTTTCTCAGTGTCCACCGAGCACTTGATGGCAGCATTGAAGATTTTCTGTTTGAGGAGA 510
|||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATTTCCTCAGTGTCCACAGGGCACTTGATGGCAGCATTGAAGATTTTCTGTTTGAGGAGA 360
Query 511 GTGTGTGCCTTCTCCTTAGAGCCTCATGGTTTGTACCATTGGATGTGGTGGAACAGGCGT 570
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 361 GTGTGTGCCTTCTCCTGAGAGCCTCATGGTTTGTACCATTGGATGTGGTGGAACTGGCGT 420
Query 571 CGTACAGCCATGGTTACCATGATGATTTTGACATTCCTTATGACTACGAGGATGAAGATG 630
|||||||| ||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 421 CGTACAGCTATGGTTACCATGATGATTTTGACATCCCATGTGACTACGAGGATGAAGATG 480
Query 631 ATGACCTTGACGAGTTTTATCTGCACGGCTCAAGTCTTCGCATAGGAAATCGGAGATGGG 690
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 481 ATGACCTTGACGAGTTTTATTTGCACGGCTCAAGACTTCGCATAGGAAATCGGAGATGGG 540
Query 691 GTGGCAATGGTTTTGTCAGATCCGGGCGTCAAGAAGCCAGGCCTGTCCAGAGATACAGTG 750
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 541 GTGGCAATGGTTTTGTCAGATCTGGGCGTCAAGAAGCCAGGCCAGTCCAGAGATACAGTG 600
Query 751 GTTCTGGTTCTAGTTCCAGTTCCAGCTCTGGGTCATCCTCAAGTGAGCCTAAGGATAAGC 810
||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 601 GTTCTAGTTCCAGTTCCAGTTCCAGTTCTGGGTCATCCTCAAGTGAGCCTAAGGATAAGC 660
Query 811 AGGTGAAGACGACAAACACAACAGGAAGACGTGCAAAAAGGGCAATGAAGCGTGAAGCTG 870
||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 661 AGGTGAAGATGACAAACACAACAGGAAGGCGTGCAAAGAGGGCAATGAAGCGTGAAGCTG 720
Query 871 CAAACAAAGCAGCGGAAGTAACTGCAGCAGCAAAGCACGAGGCCCATTTGGTTAGGTTGG 930
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CGAACAAAGCAGCGGAAGTAACTGCAGCAGCAAAGCACGAGGCCCATTTGGTTAGGTTGG 780
Query 931 GAAGGAAGTGAGTGTGTATCTGTAAATAAATTGCACTCAAAAAGCTTCCACCTACTTCCA 990
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GGAGGAAGTGAGTGTGTATCTGTAAATAAATTGCACTCAAAAAGCTTCCACCTACTTCCA 840
Query 991 TTACTTAGTATCATCTGTACAGCAAGTAGTTTTT 1024
||||||||||||| ||||||||||| ||||||||
Sbjct 841 TTACTTAGTATCACCTGTACAGCAACTAGTTTTT 874
Score = 65.8 bits (35), Expect = 7e-10
Identities = 41/44 (93%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 1113 ACAATACTTGGACAACCATTGGCTATCATATTACTCTGTTCATT 1156
||||||||||||||||||||| || ||||||||||||||||||
Sbjct 906 ACAATACTTGGACAACCATTGAATAACATATTACTCTGTTCATT 949
> Ahg488075 jgi|Araly1|488075|fgenesh2_kg.6__1209__AT5G12310.1
Length=1345
Score = 483 bits (261), Expect = 2e-135
Identities = 582/731 (80%), Gaps = 46/731 (6%)
Strand=Plus/Plus
Query 239 TCAAAATCAGGACAAAAAGAAGATC-CAGGAAGAGATCCATGAGCCGAGTTTCGGGAATC 297
|||| ||||||| ||||||||| | || ||| | || |||||| |||||||||||| |
Sbjct 376 TCAAGATCAGGATGAAAAGAAGA-CTCAACAAGTGTTCAATGAGCTGAGTTTCGGGAACC 434
Query 298 ATGGTGGCTGTTGTGCAATATG-TTTGAGTGA-AATTCCTCTTCAAGAAACTGCTATGGT 355
|||| ||||||||||| ||||| || || | | || |||||||||||||| ||||||||
Sbjct 435 ATGGCGGCTGTTGTGCTATATGCTTGGA-T-ACTATACCTCTTCAAGAAACAGCTATGGT 492
Query 356 CAAAGGCTGTGAACACACTTACTGTGTGACATGCATACTTCGTTGGGCGAGTTGCAAAGA 415
|||||||||||||| ||||||||||||| |||||||| |||||||| |||| ||||||
Sbjct 493 TAAAGGCTGTGAACATGCTTACTGTGTGACGTGCATACTCCGTTGGGCAAGTTACAAAGA 552
Query 416 GAGTCCCACATGCCCACAATGTAAGCATCCATTTGATTTTCTCAGTGTCCACCGAGCACT 475
|| || || |||||||||||||||| ||||||||||||||||| ||||||||| || ||
Sbjct 553 GAAACCTACCTGCCCACAATGTAAGCTTCCATTTGATTTTCTCAATGTCCACCGCGCTCT 612
Query 476 TGATGGCAGCATTGAAGATTTTC-TGTTTGAGGAGAGTGTGTGCCTTCTCCTTAGAGCCT 534
|| || ||| ||||||| |||| |||| ||||||||||| ||||| ||||| || || |
Sbjct 613 CGACGGAAGCGTTGAAGA-TTTCATGTTCGAGGAGAGTGTATGCCTCCTCCTGAGGGCAT 671
Query 535 CATGGTTTGTA-CCATTGGATGTGGTGGAACAGGCGTCGTACAG-CCATG---GTTACCA 589
||||| || | ||| |||| | ||||| | || || | ||| | ||| || | |
Sbjct 672 CATGG-TTCCAGCCACTGGAAGCAGTGGAGC-GG-GT--TTCAGACAATGACAATTTCAA 726
Query 590 TGATGATTTTGACATTCCTTATGACTACGAGGATGA--A-GATGATGACCTTGACGAGTT 646
| ||||||| || ||||| ||| || |||||||| | || |||||||||||||||||
Sbjct 727 TTATGATTTCGATATTCCACCTGAGTATGAGGATGAGGACGACGATGACCTTGACGAGTT 786
Query 647 TTATCTGCACGGCTCAAGTCTTCGCATAGGAAATCGGAGATGGGGTGGCAATGGTTTTGT 706
|||| |||| || ||||||||||| ||||||| ||||| ||||||| |||||| || ||
Sbjct 787 TTATATGCAAGGTTCAAGTCTTCGTTTAGGAAACCGGAGGTGGGGTGACAATGGATTCGT 846
Query 707 CAGATCCGGGCGTCAAGAAGCCAGGCCTG-TC--CA-GAGATA-C-A-GTGGTTCTGG-T 758
||| | || || |||||||| ||||| | || || ||| | | | |||| | || |
Sbjct 847 CAGGGCAGGCCGCCAAGAAGCAAGGCCGGTTCAACATAAGA-ACCGAGGTGG-ACAGGCT 904
Query 759 TCTAGTTCCAG-TTCCAGC-TCTGGGTCATCCTCAAGTGAGCCTAAGGATAAGCAGGTGA 816
||| | | | | ||| | ||| ||||||||| ||||||| || |||||| | |
Sbjct 905 TCTGGCT-CTGAACCCA-CTTCT---TCATCCTCACGTGAGCCAAAAGATAAG-A-CT-- 955
Query 817 AGACGACAAACACAACAGGAAGACGTGCAAAAAGGGCAATGAAGCGTGAAGCTGCAAACA 876
|| | | || ||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 956 AG-C-AGTGCCATAACAGGAAGGCGTGCAAAGAGGGCAATGAAGCGTGAAGCTGCAAACA 1013
Query 877 AAGCAGCGGAAGTAACT-GCAGCAGCAAAGCACGAGGCCCATTTGGTTAGGTTGGGAAGG 935
|||| ||||||| | | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1014 AAGCTGCGGAAG-CAGTAGCAGCTGCAAAGCACGAGGCCCATTTGGTTAGGTTGGGAAGG 1072
Query 936 AAGTGAGTGTG 946
|||||| ||||
Sbjct 1073 AAGTGACTGTG 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43117019127
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5