BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19440.1
Length=1273
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488833 jgi|Araly1|488833|fgenesh2_kg.6__1967__AT5G19440.1 1736 0.0
Ahg947553 jgi|Araly1|947553|scaffold_703782.1 830 0.0
> Ahg488833 jgi|Araly1|488833|fgenesh2_kg.6__1967__AT5G19440.1
Length=1163
Score = 1736 bits (940), Expect = 0.0
Identities = 1098/1173 (94%), Gaps = 16/1173 (1%)
Strand=Plus/Plus
Query 1 CAAATATACGCATTCGTCATTTGGTCCCTCCACTTAGAGAGAAGCAGACAGAACATAACT 60
|||||||||||||| | ||||| |||||||||||||||||| | | |||| ||| ||
Sbjct 1 CAAATATACGCATTGGCCATTTCGTCCCTCCACTTAGAGAG-A--A-ACAG-ACA-CAC- 53
Query 61 AAAATCGAGAAAAATGGCAAACAGTGGTGAAGGTAAAGTGGTGTGTGTAACAGGAGCCTC 120
||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 54 -AAATCTAGAAAAATGGCAAACAGTGGTGAAGGTAAAGTAGTGTGTGTAACCGGAGCCTC 112
Query 121 CGGTTACATCGCCTCATGGCTCGTCAAGTTCCTACTTAGCCGTGGCTACACTGTTAAGGC 180
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 113 TGGTTACATCGCCTCATGGCTCGTCAAGTTCCTCCTTAGCCGTGGCTACACCGTTAAGGC 172
Query 181 CTCCGTCCGTGATCCC-AGTGATCCGAAAAAGACACAACACTTAGTTTCACTAGAAGGTG 239
|||||||||||| ||| |||||||| |||||||||||||| ||||||||||| |||||||
Sbjct 173 CTCCGTCCGTGA-CCCAAGTGATCCAAAAAAGACACAACATTTAGTTTCACTGGAAGGTG 231
Query 240 CAAAGGAAAGACTTCACTTGTTCAAAGCAGACCTTTTGGAACAAGGTTCTTTCGACTCTG 299
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 232 CAAAGGAGAGACTTCACTTGTTCAAAGCAGACCTTTTGGAAGAAGGTTCTTTCGATTCTG 291
Query 300 CTATTGATGGTTGCCATGGAGTTTTCCACACTGCTTCTCCATTTTTTAATGATGCCAAAG 359
|||||||||| |||||||||||||||||||||||||| ||||||||| |||||| |||||
Sbjct 292 CTATTGATGGCTGCCATGGAGTTTTCCACACTGCTTCCCCATTTTTTCATGATGTCAAAG 351
Query 360 ACCCACAGGCTGAACTTATTGATCCTGCGGTCAAGGGGACGCTTAACGTTTTGAATTCGT 419
||||||||| ||| |||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 352 ACCCACAGGTTGAGCTTATTGATCCTGCAGTCAAGGGGACACTTAACGTTTTGAATTCTT 411
Query 420 GCGCCAAAGCCTCTTCGGTTAAGAGGGTTGTTGTAACCTCCTCCATGGCTGCCGTTGGTT 479
|| ||||||| ||||||||||| ||||||||||| |||||||||||||| ||||||| ||
Sbjct 412 GCACCAAAGCATCTTCGGTTAAAAGGGTTGTTGTTACCTCCTCCATGGCAGCCGTTGCTT 471
Query 480 ACAATGGAAAACCACGCACACCTGATGTTACCGTCGATGAAACTTGGTTCTCTGATCCTG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 ACAATGGAAAACCACGCACACCTGATGTTACCGTCGATGAAACTTGGTTCTCTGATCCTG 531
Query 540 AGCTTTGCGAGGCCTCCAAGATGTGGTATGTTCTATCCAAGACTTTGGCGGAAGATGCAG 599
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| | |
Sbjct 532 AGCTTTGCGAGACCTCCAAGATGTGGTATGTTCTATCCAAGACTTTGGCGGAGGATACCG 591
Query 600 CTTGGAAACTCGCTAAAGAGAAAGGCTTAGACATTGTTACTATTAACCCGGCTATGGTGA 659
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 CTTGGAAACTTGCTAAAGAGAAAGGCTTAGACATTGTTACTATTAACCCGGCTATGGTGA 651
Query 660 TCGGTCCTCTCCTACAGCCAACTCTGAACACGAGTGCTGCTGCTATATTAAACTTAATCA 719
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
Sbjct 652 TCGGTCCTCTCCTACAGCCAACTCTGAACACGAGTGCTGCTGCTGTACTAAACTTAATAA 711
Query 720 ATGGTGCAAAGACTTTCCCAAACTTGAGTTTCGGATGGGTTAATGTAAAAGACGTAGCCA 779
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 712 ATGGTGCAAAGACTTTCCCCAACTCGAGTTTCGGATGGGTTAATGTAAAAGACGTAGCCA 771
Query 780 ATGCGCACATCCAAGCATTTGAGGTCCCTTCAGCTAATGGGCGTTATTGTTTGGTCGAGC 839
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 772 ATGCGCACATCCAAGCATTTGAGGTCCCTTCAGCTAATGGACGTTATTGTTTGGTCGAGC 831
Query 840 GTGTCGTTCACCACTCCGAGATTGTTAACATTCTACGTGAGCTTTACCCAAATCTCCCAC 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 GTGTCGTTCACCACTCCGAGATTGTTAACATTCTACGTGAGCTTTACCCAAATCTCCCAC 891
Query 900 TACCTGAAAGGTGTGTGGACGAGAATCCCTACGTGCCAACGTATCAAGTGTCCAAGGATA 959
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 892 TCCCTGAAAGGTGTGTGGACGAGAATCCCTACGTGCCAACATATCAAGTGTCCAAGGAGA 951
Query 960 AAACGAGGAGCCTTGGCATAGACTACATACCCTTGAAGGTTAGCATCAAGGAGACCGTCG 1019
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 952 AAACGAGGAGCCTTGGCATAGACTACATACCTTTGAAGGTTAGCATCAAGGAGACCGTCG 1011
Query 1020 AGTCCTTGAAGGAAAAAGGTTTCGCACAGTTCTGAGAAAGCATTTGAGCCAATGGATTTA 1079
||||||||||||| | ||||||| ||| ||||||||||| ||||||||||||||||| |
Sbjct 1012 AGTCCTTGAAGGAGAGAGGTTTCATACACTTCTGAGAAAG-ATTTGAGCCAATGGATTCA 1070
Query 1080 ATCCAGATTAGATAAAGTATTTGGAAGACTATTTCAGAAA--TA-A-TATTTGGAACATG 1135
||||| |||||||||||||||||||| ||||| ||| ||| || | |||||||||||||
Sbjct 1071 ATCCATATTAGATAAAGTATTTGGAACACTATATCAAAAAACTATAATATTTGGAACATG 1130
Query 1136 TCAATGTTC-TCAAGGAGATATTAGTATGTTCT 1167
|||| |||| | ||||||| |||||||||||||
Sbjct 1131 TCAACGTTCCTTAAGGAGAGATTAGTATGTTCT 1163
> Ahg947553 jgi|Araly1|947553|scaffold_703782.1
Length=581
Score = 830 bits (449), Expect = 0.0
Identities = 489/509 (96%), Gaps = 0/509 (0%)
Strand=Plus/Plus
Query 198 GTGATCCGAAAAAGACACAACACTTAGTTTCACTAGAAGGTGCAAAGGAAAGACTTCACT 257
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 47 GTGATCCGAGAAAGACACAACACTTAGTTTCACTGGAAGGTGCAAAGGAAAGACTTCACT 106
Query 258 TGTTCAAAGCAGACCTTTTGGAACAAGGTTCTTTCGACTCTGCTATTGATGGTTGCCATG 317
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 107 TGTTCAAAGCAGACCTTTTGGAACAAGGTTCTTTCGACTCTGCTATTGATGGCTGCCATG 166
Query 318 GAGTTTTCCACACTGCTTCTCCATTTTTTAATGATGCCAAAGACCCACAGGCTGAACTTA 377
||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||
Sbjct 167 GAGTTTTCCACACTGCTTCTCCATTTTTTCACGATGTCAAAGACCCACAGGCTGAACTTA 226
Query 378 TTGATCCTGCGGTCAAGGGGACGCTTAACGTTTTGAATTCGTGCGCCAAAGCCTCTTCGG 437
| |||||||||||||||||||| ||||||||||||||||| ||| ||||||| |||||||
Sbjct 227 TCGATCCTGCGGTCAAGGGGACACTTAACGTTTTGAATTCTTGCACCAAAGCTTCTTCGG 286
Query 438 TTAAGAGGGTTGTTGTAACCTCCTCCATGGCTGCCGTTGGTTACAATGGAAAACCACGCA 497
|||| |||||||||||||||||||||||||| ||||||||||||||| |||||||| |||
Sbjct 287 TTAAAAGGGTTGTTGTAACCTCCTCCATGGCAGCCGTTGGTTACAATAGAAAACCATGCA 346
Query 498 CACCTGATGTTACCGTCGATGAAACTTGGTTCTCTGATCCTGAGCTTTGCGAGGCCTCCA 557
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 347 CACCTGATGTTACCGTCGATGAAACTTGGTTCTCTGATCCTGAGCTTTGCGAGTCCTCCA 406
Query 558 AGATGTGGTATGTTCTATCCAAGACTTTGGCGGAAGATGCAGCTTGGAAACTCGCTAAAG 617
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 407 AGATGTGGTATGTTCTATCCAAAACTTTGGCGGAAGATGCCGCTTGGAAACTCGCTAAAG 466
Query 618 AGAAAGGCTTAGACATTGTTACTATTAACCCGGCTATGGTGATCGGTCCTCTCCTACAGC 677
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 467 AGAAAGGCTTAGACATTGTTACTATTAACCCGACTATGGTGATCGGTCCTCTCCTACAAC 526
Query 678 CAACTCTGAACACGAGTGCTGCTGCTATA 706
|||||||||||||||||||||||||||||
Sbjct 527 CAACTCTGAACACGAGTGCTGCTGCTATA 555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47577400416
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5