BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19450.1
Length=1911
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488835 jgi|Araly1|488835|fgenesh2_kg.6__1969__AT5G19450.2 3049 0.0
Ahg488097 jgi|Araly1|488097|fgenesh2_kg.6__1231__AT5G12480.1 1746 0.0
> Ahg488835 jgi|Araly1|488835|fgenesh2_kg.6__1969__AT5G19450.2
Length=2002
Score = 3049 bits (1651), Expect = 0.0
Identities = 1802/1873 (96%), Gaps = 18/1873 (1%)
Strand=Plus/Plus
Query 35 TCTCAGGACTTCTCAGATTCGAATTATA-A-ATGGGAAATTGTTGTGCGAGCCCGGGTTC 92
||||||||||||||||||| |||||||| | ||||||||||||||||| ||||| |||||
Sbjct 139 TCTCAGGACTTCTCAGATTTGAATTATATACATGGGAAATTGTTGTGCTAGCCCCGGTTC 198
Query 93 GGAGACTGGGAGTAAGAAGGGGAAACCAAAGATCAAAAGTAACCCGTTTTATAGTGAAGC 152
|| |||||||||||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct 199 TGAAACTGGGAGTAAGAATGGGAAACCAAAGATCAAAAGTAACCCGTTTTACAGCGAGGC 258
Query 153 ATACACTACGAATGGATCTGGAACTGGGTTCAAGCTCTCTGTTTTGAAAGATCCAACAGG 212
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 259 ATACACTACAAATGGATCTGGAACTGGCTTCAAGCTCTCTGTTTTGAAAGATCCAACAGG 318
Query 213 ACATGATATATCTCTTATGTATGATCTGGGGCGTGAGGTTGGTCGCGGAGAGTTTGGTAT 272
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 GCATGATATATCTCTTATGTATGATCTGGGGCGTGAGGTTGGTCGCGGAGAGTTTGGTAT 378
Query 273 TACTTACTTGTGCACTGATATCAAAACGGGCGAGAAGTATGCGTGCAAGTCTATATCAAA 332
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 379 TACATACTTGTGCACTGATATCAAAACGGGTGAGAAGTATGCGTGCAAGTCTATATCAAA 438
Query 333 GAAGAAGCTTAGAACAGCTGTGGATATAGAGGATGTTAGGAGGGAAGTTGAGATAATGAA 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 GAAGAAGCTTAGAACAGCTGTGGATATAGAGGATGTTAGGAGGGAAGTTGAGATAATGAA 498
Query 393 ACATATGCCT-AGACACCCAAATATCGTGTCGCTGAAGGATGCCTTTGAGGATGATGATG 451
||||||||| || ||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 499 GCATATGCCTAAG-CACCCGAATATCGTGTCGCTCAAGGATGCCTTTGAGGACGATGATG 557
Query 452 CAGTGCATATAGTTATGGAGTTGTGTGAAGGAGGTGAGCTGTTTGATCGGATTGTTGCTA 511
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 558 CAGTGCATATAGTTATGGAGTTGTGTGAAGGGGGTGAGCTGTTTGATCGGATTGTTGCAA 617
Query 512 GAGGTCATTATACTGAGCGAGCTGCTGCTGCAGTGATGAAGACTATTCTTGAAGTTGTTC 571
|||||||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 618 GAGGTCATTACACTGAACGAGCTGCTGCTGCAGTAATGAAAACTATTCTTGAAGTTGTTC 677
Query 572 AGATATGCCATAAGCATGGAGTGATGCATCGGGATCTAAAGCCTGAGAACTTTCTCTTTG 631
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 678 AGATATGCCATAAGCATGGAGTGATGCATCGGGATCTAAAGCCGGAGAACTTTCTCTTTG 737
Query 632 CAAATAAAAAAGAGACATCAGCCCTTAAAGCCATAGATTTTGGATTATCAGTCTTCTTCA 691
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 738 CAAATAAAAAAGAGACATCAGCCCTTAAAGCCATAGACTTTGGATTATCAGTCTTCTTCA 797
Query 692 AGCCTGGTGAGGGATTCAACGAGATTGTTGGAAGTCCTTATTACATGGCACCAGAGGTAC 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 798 AGCCTGGTGAGGGATTCAACGAGATTGTTGGAAGTCCTTATTACATGGCACCAGAGGTAC 857
Query 752 TTAGGCGAAATTACGGACCTGAGGTTGATATCTGGAGTGCTGGAGTTATCCTTTATATCC 811
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 TGAGGCGAAATTATGGACCTGAGGTTGATATCTGGAGTGCTGGAGTTATCCTTTATATCC 917
Query 812 TGCTCTGTGGTGTCCCACCATTTTGGGCCGAGACTGAGCAAGGGGTGGCTCAGGCGATCA 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 TGCTCTGTGGTGTCCCACCATTTTGGGCCGAGACTGAGCAAGGGGTGGCTCAGGCGATCA 977
Query 872 TTAGGTCAGTTATCGACTTTAAGAGGGATCCATGGCCGAGAGTTTCTGAGACTGCCAAAG 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 TTAGGTCAGTTATCGACTTTAAGAGGGATCCATGGCCGAGAGTTTCTGAGACTGCCAAAG 1037
Query 932 ACCTTGTGAGGAAGATGCTCGAACCTGACCCCAAAAAACGGCTTTCTGCTGCACAAGTAC 991
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 ACCTTGTAAGGAAGATGCTCGAACCTGACCCCAAAAAACGGCTTTCTGCTGCACAAGTAC 1097
Query 992 TCGAACATTCTTGGATACAAAATGCGAAGAAGGCTCCAAATGTTTCACTCGGCGAGACGG 1051
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1098 TCGAACATTCTTGGATACAAAATGCAAAGAAGGCTCCAAATGTTTCACTCGGCGAGACGG 1157
Query 1052 TGAAAGCAAGACTCAAACAGTTTTCTGTTATGAACAAGCTCAAGAAAAGAGCGCTACGGG 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 TGAAAGCAAGACTCAAACAGTTTTCTGTTATGAACAAGCTCAAGAAAAGAGCGCTACGGG 1217
Query 1112 TGATAGCCGAACACTTATCAGTGGAGGAAGTAGCTGGCATCAAGGAAGCATTTGAGATGA 1171
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1218 TGATAGCCGAACACTTATCAGTGGAGGAAGTAGCTGGCATTAAGGAAGCATTTGAGATGA 1277
Query 1172 TGGACAGTAAAAAGACGGGAAAGATAAACCTCGAGGAGCTTAAATTTGGACTTCATAAAC 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 TGGACAGTAAAAAGACGGGAAAGATAAACCTCGAGGAGCTTAAATTTGGACTTCATAAAC 1337
Query 1232 TCGGACAGCAGCAGATACCTGATACTGATCTACAGATTCTGATGGAAGCTGCTGATGTTG 1291
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1338 TTGGACAGCAGCAGATACCTGATACTGATCTACAGATCCTGATGGAAGCTGCTGATGTAG 1397
Query 1292 ATGGGGATGGGACTTTAAATTATGGGGAGTTTGTGGCTGTCTCTGTGCATCTTAAGAAAA 1351
|||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 1398 ATGGGGATGGAACTTTAAATTATGGCGAGTTTGTGGCTGTCTCCGTGCATCTTAAGAAAA 1457
Query 1352 TGGCGAACGACGAACACTTGCATAAGGCTTTTAGCTTTTTTGACCAGAATCAGAGCGATT 1411
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1458 TGGCGAACGACGAACACTTGCATAAGGCTTTTAGCTTTTTTGACCAGAATCTGAGCAATT 1517
Query 1412 ACATAGAGATTGAGGAGCTGCGTGAGGCTTTAAATGATGAGGTGGATACTAACAGTGAAG 1471
||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1518 ACATAGAGATTGAGGAGCTTCGTGAGGCTTTAAATGATGAGGTAGATACTAGCAGTGAAG 1577
Query 1472 AAGTTGTTGCAGCTATTATGCAAGATGTTGACACAGACAAGGACGGACGAATAAGCTATG 1531
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1578 AAGTTGTTGCAGCTATCATGCAAGATGTTGACACAGACAAGGATGGACGAATAAGCTATG 1637
Query 1532 AAGAGTTTGCGGCGATGATGAAAGCTGGAACAGATTGGAGGAAAGCGTCGAGGCAGTATT 1591
||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1638 AAGAGTTTGCGGCAATGATGAAAGCTGGAACGGACTGGAGGAAAGCGTCGAGGCAGTATT 1697
Query 1592 CCCGGGAAAGATTCAACAGTTTGAGCCTCAAGTTAATGAGAGAAGGTTCATTGCAATTAG 1651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698 CCCGGGAAAGATTCAACAGTTTGAGCCTCAAGTTAATGAGAGAAGGTTCATTGCAATTAG 1757
Query 1652 AAGGCGAAAATTAAGAAAGGTTCTTTGTTTCTGTATCTCTTAAAGAAGTaaaaagaaaaa 1711
||||||| |||| ||||||| |||| ||||||||||||||||||||| |||||||||||
Sbjct 1758 AAGGCGAGAATTGAGAAAGGATCTT-GTTTCTGTATCTCTTAAAGAATTAAAAAGAAAA- 1815
Query 1712 ggaaaaaaCAGTATTCTTTGAAAATTGTTTATCttttttttt---CCTCAATAATTGTAG 1768
| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1816 G-AAAAAACAGTATTCTTTGAAAATTGTT-ATCTTTTTTTTTTTTCCTCAATAATTGTAG 1873
Query 1769 ATCAGGGTTTC-AAATGTTTTAGTTACTTGAATAGCCAGCCATGTACGATATGAAGCA-G 1826
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1874 ATCAGGGTTTCCAAATTTTTTAGTTACTTGAATAGCCAGCCATGTACGATATGAAG-ATG 1932
Query 1827 ATGTTCTTAAATTTTCTGACTCTTTATTTT-CATGTTGTCTGGATCCTTAATACTATTTG 1885
||||||| |||||||||||||||||||||| |||||||||||||||||||||| | || |
Sbjct 1933 ATGTTCTAAAATTTTCTGACTCTTTATTTTTCATGTTGTCTGGATCCTTAATA-T-TT-G 1989
Query 1886 TTGGCAAACAATA 1898
|||||||||||||
Sbjct 1990 TTGGCAAACAATA 2002
> Ahg488097 jgi|Araly1|488097|fgenesh2_kg.6__1231__AT5G12480.1
Length=2036
Score = 1746 bits (945), Expect = 0.0
Identities = 1408/1629 (86%), Gaps = 42/1629 (3%)
Strand=Plus/Plus
Query 64 ATGGGAAATTGTTGT-GCGAGCCCGGGTTCGG--A-G-ACTGGGAGTAAG-AAGGGGAAA 117
||||| ||||||||| || || |||||||||| | | || | ||||||| || || |||
Sbjct 207 ATGGGGAATTGTTGTGGC-AGTCCGGGTTCGGCTACGAAC-GAGAGTAAGCAA-GGAAAA 263
Query 118 CCAAAGATCAAAAGTAACCCGTTTTATAGTGAA-GCATACACT---ACGA-ATGGATCTG 172
|| |||| ||||| || || ||||| || || | ||||||| || | || ||||||
Sbjct 264 CCCAAGAACAAAAACAATCCTTTTTACAG-CAATGAATACACTGCAAC-AGATAGATCTG 321
Query 173 GAACTGGGTTCAAGCTCTCTGT-TTTGAAAGATCCAACAGGACATGATATATCTCTT--A 229
|| |||| || ||||||||||| || |||||||| ||||||||||||||||| ||| |
Sbjct 322 GAGCTGGTTTTAAGCTCTCTGTGCTT-AAAGATCCTACAGGACATGATATATC-CTTGCA 379
Query 230 TGTATGATCTGGGGCGTGAGGTTGGTCGCGGAGAGTTTGGTATTACTTACTTGTGCACTG 289
||||||| |||| |||||||||||||| || ||||||||||| ||||||||||| ||||
Sbjct 380 -GTATGATTTGGGACGTGAGGTTGGTCGAGGCGAGTTTGGTATAACTTACTTGTGTACTG 438
Query 290 ATATCAAAACGGGCGAGAAGTATGCGTGCAAGTCTATATCAAAGAAGAAGCTTAGAACAG 349
||| |||| || || |||||||| |||||||| ||||| ||||||||||| |||||||
Sbjct 439 ATAAGGAAACAGGTGACAAGTATGCCTGCAAGTCCATATCGAAGAAGAAGCTGAGAACAG 498
Query 350 CTGTGGATATAGAGGATGTTAGGAGGGAAGTTGAGATAATGAAACATATGCCTAGACACC 409
| || ||||| ||||||||||||||||| |||||||| ||||| |||||||||| |||||
Sbjct 499 CAGTTGATATTGAGGATGTTAGGAGGGAGGTTGAGATTATGAAGCATATGCCTAAACACC 558
Query 410 CAAATATCGTGTCGCTGAAGGATGCCTTTGAGGATGATGATGCAGTGCATATAGTTATGG 469
||||| |||| || |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 559 CAAATGTCGTCTCTTTGAAGGATGCCTTTGAGGATGATGATGCGGTGCATATAGTTATGG 618
Query 470 AGTTGTGTGAAGGAGGTGAGCTGTTTGATCGGATTGTTGCTAGAGGTCATTATACTGAGC 529
|||||||||||||||| || |||||||||||||||||||| ||||||||||| |||||||
Sbjct 619 AGTTGTGTGAAGGAGGGGAACTGTTTGATCGGATTGTTGCAAGAGGTCATTACACTGAGC 678
Query 530 GAGCTGCTGCTGCAGTGATGAAGACTATTCTTGAAGTTGTTCAGATATGCCATAAGCATG 589
||||||||||||| || |||||||||||| |||||||||||||||||||||||||||| |
Sbjct 679 GAGCTGCTGCTGCGGTTATGAAGACTATTGTTGAAGTTGTTCAGATATGCCATAAGCAGG 738
Query 590 GAGTGATGCATCGGGATC-TAAAGCCTGAGAACTTTCTCTTTGCAAATAAAAAAGAGACA 648
|||||||||||||||||| |||| || ||||||||||| ||||||||||| |||||||||
Sbjct 739 GAGTGATGCATCGGGATCTTAAA-CCAGAGAACTTTCTTTTTGCAAATAAGAAAGAGACA 797
Query 649 TCAGCCCTTAAAGCCATAGATTTTGGATTATCAGTCTTCTTCAAGCCTGGTGAGGGA-TT 707
||| |||| || ||||| |||||||||||||| || |||||||| |||||||| | | ||
Sbjct 798 TCACCCCTCAAGGCCATTGATTTTGGATTATCTGTATTCTTCAAACCTGGTGA-GCAGTT 856
Query 708 CAACGAGATTGTTGGAAGTCCTTATTACATGGCACCAGAGGTACTTAGGCGAAATTACGG 767
|| |||||||||||||||||||||||||||||||| ||||| || ||||||| || ||
Sbjct 857 TAATGAGATTGTTGGAAGTCCTTATTACATGGCACCCGAGGTGCTGCGGCGAAACTATGG 916
Query 768 ACCTGAGGTTGATATCTGGAGTGCTGGAGTTATCCTTTATATCCTGCTCTGTGGTGTCCC 827
||||||| | || ||||||| |||||||| ||||| |||||||| || |||||||||||
Sbjct 917 ACCTGAGATCGACGTCTGGAGCGCTGGAGTCATCCTCTATATCCTACTTTGTGGTGTCCC 976
Query 828 ACCATTTTGGGCCGAGACTGAGCAAGGGGTGGCTCAGGCGATCATTAGGTCAGTTATCGA 887
||||||||||| |||||||| |||||||||||||| ||||||||||||||||| || ||
Sbjct 977 GCCATTTTGGGCTGAGACTGAACAAGGGGTGGCTCAAGCGATCATTAGGTCAGTAATTGA 1036
Query 888 CTTTAAGAGGGATCCATGGCCGAGAGTTTCTGAGA-CTGCCAAAGACCTTGTGAGGAAGA 946
||||||||| ||||||||||||||||||||||| | | ||||||||||||||||| ||||
Sbjct 1037 CTTTAAGAGAGATCCATGGCCGAGAGTTTCTGACAGC-GCCAAAGACCTTGTGAGAAAGA 1095
Query 947 TGCTCGAACCTGACCCCAAAAAACGGCTTTCTGCTGCACAAGTACTCGAACATTCTTGGA 1006
|||| |||||||| || |||||||||||| ||||||||||||| ||||||||| ||||||
Sbjct 1096 TGCTTGAACCTGATCCAAAAAAACGGCTTACTGCTGCACAAGTGCTCGAACATACTTGGA 1155
Query 1007 TACAAAATGCGAAGAAGGCTCCAAATGTTTCACTCGGCGAGACGGTGAAAGCAAGACTCA 1066
||| ||||| ||||||||||||||||| || || || ||||| ||||||||||| ||||
Sbjct 1156 TACTGAATGCAAAGAAGGCTCCAAATGTCTCTCTTGGGGAGACTGTGAAAGCAAGGCTCA 1215
Query 1067 AACAGTTTTCTGTTATGAACAAGCTCAAGAAAAGAGCGCTACGGGTGATAGCCGAACACT 1126
| |||||||||||||||||||||||||||||| |||| ||||| |||||||| |||||||
Sbjct 1216 AGCAGTTTTCTGTTATGAACAAGCTCAAGAAACGAGCTCTACGAGTGATAGCTGAACACT 1275
Query 1127 TATCAGTGGAGGAAGTAGCTGGCATCAAGGAAGCATTTGAGATGATGGACAGTAAA-AAG 1185
| ||||||||||||| ||| || || |||||||||||||| ||||||||| ||||| |||
Sbjct 1276 TGTCAGTGGAGGAAGCAGCAGGGATAAAGGAAGCATTTGAAATGATGGAC-GTAAACAAG 1334
Query 1186 ACG-GGAAAGATAAACCTCGAGGAGCTTAAATTTGGACTTCATAAA-CTCGGACAGCAGC 1243
| | || |||||||| |||||||||||||||| ||||||||| ||| || ||||| | |
Sbjct 1335 A-GAGGCAAGATAAATCTCGAGGAGCTTAAATATGGACTTCAAAAAGCT-GGACA--A-C 1389
Query 1244 AGATAC-CTGATACTGATCTACAGATTCTGATGGAAGCTGCTGATGTTGATGGGGATGGG 1302
|||| | | ||| ||||||| || ||||| ||||||||| ||||||||||||||||||||
Sbjct 1390 AGAT-CGCCGATGCTGATCTTCAAATTCTTATGGAAGCTACTGATGTTGATGGGGATGGG 1448
Query 1303 ACTTTAAATTATGGGGAGTTTGTGGCTGTCTCTGTGCATCTTAAGAAAATGGCGAACGAC 1362
|| | || ||| | |||||||| || || || || || |||||||| |||||||| ||
Sbjct 1449 ACACTGAACTATAGCGAGTTTGTTGCGGTTTCGGTCCACCTTAAGAAGATGGCGAATGAT 1508
Query 1363 GAACACTTGCATAAGGCTTTTAGCTTTTTTGACCAGAATCAGAGCGATTACATAGAGATT 1422
|||||||||||||| ||||||| ||| ||||| ||||| ||||| | |||||||||||||
Sbjct 1509 GAACACTTGCATAAAGCTTTTAACTTCTTTGATCAGAACCAGAGTGGTTACATAGAGATT 1568
Query 1423 GAGGAGCTGCGTGAGGCTTTAAATGATGAGGTGG---ATACTAACAGTGAAGAAGTTGTT 1479
|| || || ||||| || || |||||||| ||| |||||| ||||| ||||| |
Sbjct 1569 GAAGAACTTCGTGAAGCCTTGAATGATGAATTGGATAATACTAGTAGTGAGGAAGTAATC 1628
Query 1480 GCAGCTATTATGCAAGATGTTGACACAGACAAGGACGGACGAATAAGCTATGAAGAGTTT 1539
||||| || |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1629 GCAGCCATCATGCAAGATGTTGATACCGACAAGGACGGACGAATAAGCTATGAAGAGTTT 1688
Query 1540 GCGGCGATGATGAAAGCTGGAACAGATTGGAGGAAAGCGTCGAGGCAGTATTCCCGGGAA 1599
| ||||||||||||||||| ||||||||||| ||||| || ||||| ||||||||||||
Sbjct 1689 GTTGCGATGATGAAAGCTGGGACAGATTGGAGAAAAGCATCAAGGCAATATTCCCGGGAA 1748
Query 1600 AGATTCAACAGTTTGAGCCTCAAGTTAATGAGAGAAGGTTCATTGCAATTAGAAGGCGAA 1659
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1749 AGATTCAACAGTTTGAGCCTCAAGTTAATGAGAGATGGTTCATTGCAATTAGAAGGCGAG 1808
Query 1660 AATTAAGAA 1668
| ||||||
Sbjct 1809 ACCTAAGAA 1817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71800111825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5