BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19470.1
Length=1271
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941495 jgi|Araly1|941495|scaffold_602039.1 1672 0.0
Ahg941494 jgi|Araly1|941494|scaffold_602038.1 1086 0.0
> Ahg941495 jgi|Araly1|941495|scaffold_602039.1
Length=1139
Score = 1672 bits (905), Expect = 0.0
Identities = 1043/1112 (94%), Gaps = 0/1112 (0%)
Strand=Plus/Plus
Query 1 ATGGCATCTGCATTTTGCTCACTTTGTCCCACTCCCACCTCCTTATTCTCTTCCCACGCG 60
|||||||||| |||||| || |||||||||||| ||| ||||||||||| ||||| |||
Sbjct 22 ATGGCATCTGGATTTTGTTCTCTTTGTCCCACTGTCACTTCCTTATTCTCGTCCCAAGCG 81
Query 61 CTTATACCCACTCTACAGTGGCGTTCGAGTTCGAGTTCGAGGTCTCCTCCGCTACATATT 120
|||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||
Sbjct 82 CTTATACCCACTCTACAGTGGCGTTCTAGTTCGAGTTCTAGGTCTCCTCCGGTACATATT 141
Query 121 TCCCGCGTTTTATCAGTTGAAACTGTTCCTTTAAGCCCATCATTCACCTGGAACGATGTT 180
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 142 TCCCGCGTTTTATCAGTTGAAACTGTTCCTATAAGCCCATCCTTCACCTGGAACGATGTT 201
Query 181 TTTGAGAACAGTCGAAAAGAATACGTGCCTCAGAACTCCTCCGATCTCACCGGATTTCTC 240
|| ||||| ||||| || || |||||||| ||||| ||||||||||||||||||||
Sbjct 202 TTCGAGAATTGTCGAGCCGAGTATGTGCCTCAAAACTCGTCCGATCTCACCGGATTTCTT 261
Query 241 GAGAAAGTCGACCGCTGTAATCGTGGATTAGAGAAGTTAGGTGAGTTCATTCCATTTGTT 300
|||||||| |||||||| |||||||||||||| ||||||| |||||||||||||||||||
Sbjct 262 GAGAAAGTTGACCGCTGCAATCGTGGATTAGAAAAGTTAGCTGAGTTCATTCCATTTGTT 321
Query 301 ATAGAGGAACAAATCGTTGGTTATATTCACAAGGGATTTACAAAGTACTTGAGGGACTTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 ATAGAGGAACAAATCGTTGGTTATATTCACAAGGGATTTACAAAGTACTTGAGGGACTTT 381
Query 361 AATGATATCTTTACATTTTCACAATATGGTGGCCATGTAACGCTTAACATGATGCTTGAC 420
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 382 CATGATATCTTTACATTTTCACAATATGGTGGCCATGTAACACTTAACATGATGCTTAAA 441
Query 421 AAGCCTGAAGAAAGAACCAGAGCAGTTGCACATGTGATCAAAATATTGGGTAACAAAGGA 480
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||
Sbjct 442 AAGCCTGAAGAAAGAACCAGAGCAGTTGCAAATGTGATCAAAATCTTGGGTAACAGAGGA 501
Query 481 ATCATCCCTGGGATACGAAATGAGCTATATCCTGTGAAGCCATCGTTTAATGCTCCTGCC 540
||||||||||| |||||||||||||| ||||||||||||||||||||||||||| | |||
Sbjct 502 ATCATCCCTGGAATACGAAATGAGCTGTATCCTGTGAAGCCATCGTTTAATGCTTCGGCC 561
Query 541 tttttttCTATAGAGCGTGCTGCTGCTCCTTATTTTGGATTGAAGGGTTACGCAATTCAT 600
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 562 TTTTTTTCTCTAGAGCGTGCTGCTGCTCCTTATTTCGGATTGAAGGGTTACGCAATTCAT 621
Query 601 GTGAATGGGTATGTAGAAAGAGATGGACAAAAATTTCTATGGATAGGTAAAAGAAGTCTA 660
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 622 GTGAATGGGTATGTAGAAAGAGATGGACAAAAATTTCTATGGATAGGTAAGAGAAGTCTA 681
Query 661 GCAAAATCCACTTATCCAGGAAAACTTGATCATCTGGTTGCTGGAGGATTGCCTCACGGG 720
|| |||||||||||||| ||| |||||||||||||||||||||||||||||||| |||
Sbjct 682 GCGAAATCCACTTATCCTGGATTGCTTGATCATCTGGTTGCTGGAGGATTGCCTCATGGG 741
Query 721 ATTAGCGTTTGTGAGAATCTAGTAAAGGAATGCGAAGAGGAAGCTGGGATTTCCAAAGTC 780
||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 742 ATTAGTGTTTGTGAGAATCTGGTAAAGGAATGCAAAGAGGAAGCTGGGATTTCCAAAGTC 801
Query 781 TTGGCTGATAGGGCGATTGCGGTCGGTGTTGTTTCCTACATGGATATCGATCGGTACTGT 840
||||||||||||||||| ||||| |||| |||||| ||||||||||||||||||||||||
Sbjct 802 TTGGCTGATAGGGCGATAGCGGTTGGTGCTGTTTCATACATGGATATCGATCGGTACTGT 861
Query 841 TTCACACGTGATGTGCTGTTTTGTTATGATTTGGAACTCCCTCAAGATTTTGTTCCCACA 900
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 862 TTCACACGTGATGTGCTGTTTTGTTATGATTTGGAGCTCCCTCAAGATTTTGTTCCCAAA 921
Query 901 AATCAAGATGGAGAAGTTGACAGCTTCAGGTTGATTCCAGTCGCTCAAGTTGCTAATGTG 960
|||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||
Sbjct 922 AATCAAGATGGAGAAGTTGACAGCTTCAAGTTGATTCCAGTAGCCCAAGTTGCTAATGTG 981
Query 961 GTTCGGAAGACTAGtttttttAAGGACAGTTGTTCCCTGGTCATTATTGACTTCTTGTTT 1020
|||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 982 GTTCGGAAGACTAGTTTTTTCAAGGATAGTTGTTCCCTTGTCATTATTGACTTCTTGTTT 1041
Query 1021 CGGCACGGGTTAATCAGACCAGAGTCACCGGGTTACTTGGATCTATACCGACGCCTGAGG 1080
||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1042 CGGCACGGGTTCATCCGACCAGAGTCACCGGGTTACTTGGATCTATACCGTCGCCTGAGG 1101
Query 1081 AATGGAGATTGCTCATAAGGACGTTACTTTCT 1112
|||||||||||||| |||||| |||||| |||
Sbjct 1102 AATGGAGATTGCTCTTAAGGATGTTACTATCT 1133
> Ahg941494 jgi|Araly1|941494|scaffold_602038.1
Length=1162
Score = 1086 bits (588), Expect = 0.0
Identities = 964/1137 (85%), Gaps = 59/1137 (5%)
Strand=Plus/Plus
Query 13 TTTTGCTCACTTTG-TCCCACTCCCACCTCCTTATTCTCTTCCCACGCGCTTATACCCAC 71
||||| |||| | | ||| ||| ||||||||||||||| |||||||||| | |
Sbjct 38 TTTTGTTCAC-TGGTTCCAACTGTCACCTCCTTATTCTCGTCCCACGCGC-T-T------ 88
Query 72 TCTACAGTGGCGTTCGAGTTCGAGTTCGAGGT-CTCCTCCGCTACATATTTCCCGCG-TT 129
| || ||||||||||||||| | | | | |||||||||| | ||||||||||| ||
Sbjct 89 GC-ACGGTGGCGTTCGAGTTCTA--T-G-TCTCCTCCTCCGCTGCGTATTTCCCGCGCTT 143
Query 130 TTATCAGTTG-AA--ACTGTTCCTTTAAGC-CCATCATTCACCTGGAACGATGTTTTTGA 185
|| |||| || || |||||||| ||||| || || ||||| ||| |||| || | ||
Sbjct 144 TT-TCAGCTGCAACCACTGTTCCGATAAGCTCC-TCCTTCACTTGGGACGACGTAATCGA 201
Query 186 GAACAGTC--GAAAAGAATACGTGCCTCAGAACTCCTCCGATCTCACCGGATTTCTCGAG 243
|| | ||| || || |||| |||||| ||||||||| ||||||||||||||||||||
Sbjct 202 GACCGGTCGGGAGGAGTATAC--GCCTCACAACTCCTCCCATCTCACCGGATTTCTCGAG 259
Query 244 AAAGTCGACCGCTGTAATCGTGGATTAGAGAAGTTAGGTGAGTTCATTCCATTTGTTATA 303
|||||||| | ||| || || |||| || ||||||| ||||||||||||||||||||||
Sbjct 260 AAAGTCGATCTCTGCAAACGCGGATCCGAAAAGTTAGCTGAGTTCATTCCATTTGTTATA 319
Query 304 GAGGAACAAATCGTTGGTTATATTCACAAGGGATTTACAAAGTACTTGAGGGACTTTAAT 363
|||||||||||||||||||||||||| || |||||||| ||||||||||||| ||| ||
Sbjct 320 GAGGAACAAATCGTTGGTTATATTCATAAAGGATTTACGGAGTACTTGAGGGAGTTTCAT 379
Query 364 GATATCTTTACATTTT--C---A-----C--A--AT-AT---G--G-TGGCCATGTAACG 402
|||||||||||||||| | | | | || || | | |||| |||||||
Sbjct 380 GATATCTTTACATTTTCACAAAATGGTTCTTACCATGATCGCGTTGATGGCTTTGTAACG 439
Query 403 CTTAA-CATGATGCTTGACAAGCCTGAAGAAAGAACCAGAGCAGTTGCACATGTGATCAA 461
||||| | |||||||||| ||||||||||| ||||||| |||||||||| ||||||||||
Sbjct 440 CTTAATC-TGATGCTTGAAAAGCCTGAAGATAGAACCAAAGCAGTTGCAGATGTGATCAA 498
Query 462 AATATTGGGTAACAAAGGAATCATCCCTGGGATACGAAATGAGCTATATCCTGTGAAGCC 521
| | |||||| ||||||||||||| || | ||||| |||||||| ||||||||||| ||
Sbjct 499 AGTCTTGGGTGACAAAGGAATCATTCCACGAATACGTAATGAGCTTTATCCTGTGAAACC 558
Query 522 ATCGTTTAATGCTCCTGCCtttttttCTATAGAGCGTGCTGCTGCTCCTTATTTTGGATT 581
|||||||||||| || | | |||||||| | ||||||||||||||||||||||| ||| |
Sbjct 559 ATCGTTTAATGCCCCGGTCATTTTTTCTCTTGAGCGTGCTGCTGCTCCTTATTTCGGAAT 618
Query 582 GAAGGGTTACGCAATTCATGTGAATGGGTATGTAGAAAGAGATGGACAAAAATTTCTATG 641
|||||||||| | |||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 619 AAAGGGTTACGGAGTTCACATGAATGGGTATGTAGAAAGAGATGGACAGAAATTTCTATG 678
Query 642 GATAGGTAAAAGAAGTCTAGCAAAATCCACTTATCCAGGAAAACTTGATCATCTGGTTGC 701
||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 679 GATAGGTAAGAGAAGTCTCTCAAAATCCACTTATCCAGGAATGCTTGATCATCTGGTTGC 738
Query 702 TGGAGGATTGCCTCACGGGATTAGCGTTTG-TGAGAATCTAGTAAAGGAATGCGAAGAGG 760
||||||||||||||||||||||||| | | ||||||||| |||||||||||||||||||
Sbjct 739 TGGAGGATTGCCTCACGGGATTAGC-TGCGGTGAGAATCTTGTAAAGGAATGCGAAGAGG 797
Query 761 AAGCTGGGATTTCCAAAGTC-TTGGCTGATAGGGCGATTGCGGTCGGTGTTGTTTCCTAC 819
|||||||||||||||||| | ||| |||||||||| || || || |||| |||||| |||
Sbjct 798 AAGCTGGGATTTCCAAAGCCATTG-CTGATAGGGCAATAGCTGTTGGTGCTGTTTCATAC 856
Query 820 ATGGATATCGATCGGTACTGTTTCACACGTGATGTGCTGTTTTGTTATGATTTGGAACTC 879
||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 857 ATGGATATCGATCAGTACTGTTTCAAACGTGATGTGCTTTTTTGTTATGATTTGGAACTC 916
Query 880 CCTCAAGATTTTGTTCCCACAAATCAAGATGGAGAAGTTGACAGCTTCAGGTTGATTCCA 939
||||||||||||||||||| |||||||||||||||||| || ||||||| ||||||||||
Sbjct 917 CCTCAAGATTTTGTTCCCAAAAATCAAGATGGAGAAGTAGAGAGCTTCAAGTTGATTCCA 976
Query 940 GTCGCTCAAGTTGCTAATGTGGTTCGGAAGA---CTAGtttttttAAGGAC-AGTTGTTC 995
|| || ||||||||||||||| ||||||||| |||||||||| |||| | | |||||
Sbjct 977 GTAGCCCAAGTTGCTAATGTGATTCGGAAGAAGACTAGTTTTTTCAAGG-CGAACTGTTC 1035
Query 996 CCTGGTCATTATTGACTTCTTGTTTCGGCACGGGTTAATCAGACCAGAGTCACCGGGTTA 1055
||| |||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||
Sbjct 1036 CCTTGTCATTATTGACTTCTTGTTTCGGCACGGGTTCATCAGACCAGAATCATCGGGTTA 1095
Query 1056 CTTGGATCTATACCGACGCCTGAGGAATGGAGATTGCTCATAAGGACGTTACTTTCT 1112
|||| |||||||| |||||||||||||| |||||||||||||||| | |||| |||
Sbjct 1096 CTTGCATCTATACGGACGCCTGAGGAATAAAGATTGCTCATAAGGATGCTACTATCT 1152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47501154582
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5