BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G19473.1

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg488838 jgi|Araly1|488838|fgenesh2_kg.6__1972__AT5G19473.1         760    0.0  


> Ahg488838 jgi|Araly1|488838|fgenesh2_kg.6__1972__AT5G19473.1
Length=501

 Score =  760 bits (411),  Expect = 0.0
 Identities = 473/502 (94%), Gaps = 7/502 (1%)
 Strand=Plus/Plus

Query  4    CTCCTCCTCGTCATGAACACCTTCATCAATGTTTAAGAACATCTTTCTTCTAAACCAAGC  63
            |||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct  1    CTCCTCCTAGTCATGAACACCTTCTTCAATGTTTAAGAACCTCTTTCTTCTAAACCAAGC  60

Query  64   AATATCTATTTATGGATAAAAGAAGGGAGAATGCTGCATGGACTCCAGTTCCACAGTTCG  123
            || |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct  61   AAGATCTATTTATGGATAAGAGAAGGGAGAATGCTGGATGGACTCCAGTTCCACAGTTCG  120

Query  124  GAGGGTGGGACCAAAAAGGACCAAATGATGCTACAAACTACTCGGTTGTCTTTTCTAAAG  183
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||
Sbjct  121  GAGGGTGGGACCAAAAAGGACCAAATGATGCTACAAACTACTCGGTTGTCTTCTCCCAAG  180

Query  184  CTCGCGCAAACAGGAAGCAGAACAAAGCTGGTGTAAGACATTCTAGTTTGGGAAGCGAAC  243
            ||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct  181  CTCGCGCTAACAGGAAGCAGAACAAAGCTGTTGTGAGACATTCTAGTTTGGGAAGCGAAC  240

Query  244  AAGAACTCATGGTAAGTGTTCGTCGCAACCACCAACAACTTCACCATCGCCATGAAACTC  303
            |||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct  241  AAGAACTCATGGCAAGTGTTCGTCGGAACCACCAGCAACTTCACCATCGCCATGAAACCC  300

Query  304  AAGACGATGACCCTGTCATGAAGAAGAAGAGGATCTTGACCTACATTAATTGTTGTATAA  363
            |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct  301  AAGATGATGACCCTGTCATGAAGAAGAAGAGGATCTTGACCTACATAAATTGTTGTATCA  360

Query  364  GGCCAAACTAGGGCTTTGTTCTTCTACAAAGTCGGAATCTTTCTCTCTTCAGCGATATAG  423
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  361  GGCCAAACTAGGGCCTTGTTCTTCTACAAAGTCGGAATCTTTCTCTCTTCAGCGATATAG  420

Query  424  CAAATAT--GTCTCAAGTGTGTAAAGA-C-AG-T-AGTGTAACGTTTCTGTAATCTTCTT  477
            |||||||  |||||| ||||||||||| | || | |||||||||||||||||||||||||
Sbjct  421  CAAATATTTGTCTCA-GTGTGTAAAGATCGAGATTAGTGTAACGTTTCTGTAATCTTCTT  479

Query  478  TATCACACACaaaaaaaaaaaa  499
            ||||||| | ||||||||||||
Sbjct  480  TATCACAAAAAAAAAAAAAAAA  501



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20718484827


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5