BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19480.1
Length=1072
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488840 jgi|Araly1|488840|fgenesh2_kg.6__1974__AT5G19480.2 1258 0.0
Ahg488066 jgi|Araly1|488066|fgenesh2_kg.6__1200__AT5G12230.1 442 3e-123
> Ahg488840 jgi|Araly1|488840|fgenesh2_kg.6__1974__AT5G19480.2
Length=1200
Score = 1258 bits (681), Expect = 0.0
Identities = 812/872 (93%), Gaps = 21/872 (2%)
Strand=Plus/Plus
Query 217 aaaaaTATGGAATCAGAGAGCGTTAAGTTTGGAGGTCCTAGAGAATTGGGTGGTGCACTA 276
||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 264 AAAGATATGGAATCAGAGAGCGTTAAGTTTGGAGGTCCAAGAGAATTAGGTGGTGCACTA 323
Query 277 GATCTTATAACACAATACAAGTTGTTGCCACACCATGAATTCTTTTGCAAGAGATCACTT 336
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 324 GATCTTATAACCCAATACAAGTTGTTGCCACACCATGAATTCTTCTGCAAGAGATCACTT 383
Query 337 CCAGAGTCACTGTCAGATGCTCATTATCTTCATAATTTGGTTGGAGACACAGAGATTAGA 396
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 384 CCAGAGTCACTTTCAGATGCTCATTATCTTCATAATTTGGTTGGAGACACCGAGATTAGA 443
Query 397 AAAGGAGAAGGAATGCAATTAGATCAGCTTATTCCTAATGCATCACTTAGTAGCCGAGAT 456
|||||||| ||||||||||| |||||||||||||| |||||||||||||||| |||||||
Sbjct 444 AAAGGAGATGGAATGCAATTGGATCAGCTTATTCCCAATGCATCACTTAGTACCCGAGAT 503
Query 457 ACGAATGCTCGCATCCAACCTTTTGTTCTT-GATGAACTTAAGGAGGCTTTTGAGCTTAA 515
| |||||||| || |||||||||||| || |||||||||||||||||||||||||||||
Sbjct 504 TCCAATGCTCGTATTCAACCTTTTGTT-TTAGATGAACTTAAGGAGGCTTTTGAGCTTAA 562
Query 516 TGATACAGCTCCTGTTGAATTGCCTCCAGCAGAGAAGGGAGCTCCTACCACTGTATCAAA 575
||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||
Sbjct 563 TGATACAGCTCCTGTTGAATTGCCTCCTGCAGAGAAGGGAGCTCCTACCACGGCCTCAAA 622
Query 576 ATCAAAAAGTGAGTCAAAAGATAAGGATAGGAAACATAGAAAACATAAAGACAAGAA--- 632
||||||||||||||| ||||||||||| ||||| ||||||||||| ||||| |||||
Sbjct 623 ATCAAAAAGTGAGTCGAAAGATAAGGACAGGAAGCATAGAAAACACAAAGAAAAGAATAA 682
Query 633 GGAGAAAGATAGGGAACATAAGAAGCACAAGCACAAGCataaagataggatcaaagataa 692
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 683 GGAGAAAGATAGGGAACATAAGAAGCACAAGCACAAGCATAAAGATAGGAGCAAAGATAA 742
Query 693 ggataaagacaaggatcgagacaaaaagaaggaaaaaagTGGACACCATGATAAGAAAAG 752
||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||
Sbjct 743 GGATAAAGACAAGGATCGAGACAGAAAGAAGGACAAAAGTGGGCACCATGATAAGAAAAG 802
Query 753 GAAGAACAATGGGACTGAAGATGCT-GATGACGTTCAGAGGCACAAAAAGAGTAAGCATA 811
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 803 GAAGAACAATGGGACTGAAGAT-CTTGATGACGTTCAGAGGCACAAAAAGAGTAAGCATA 861
Query 812 AGAGCTCAAAGCTTGATGAGATGGGAGCGATGTAGGTTGGAGGCTGAAGCCGTGCACACT 871
||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 862 AGAGCTCAAGGCTTGATGAGATGGGAGCGATGTAGGTTGGAGGCTGAAGCCGGGGACACT 921
Query 872 TTCATTTTTGTATTGCACACCCAAGGTGTCATGGAGAGGCTTAGAAGCAGCTAACTTTGT 931
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 922 CTCATTTTTGTATTGCACACCCAAGGTGTCATGGAGAGGTTTAGAAGCAGCTAACTTTGT 981
Query 932 TAGGTTTAATCTCTAAATAAAAATTGCATTGTGGGAGAAGTTAGGAGGGGTTAAGCAACG 991
||||||||||||||||||||||||| || |||||| ||||||||||||||| ||||||||
Sbjct 982 TAGGTTTAATCTCTAAATAAAAATTTCACTGTGGGGGAAGTTAGGAGGGGTGAAGCAACG 1041
Query 992 AAAAGTTCGCCAAGAAG--AA------TCACA-A-CTTGTACATTTTGTTACACTTTAAA 1041
||| ||||||||||||| || ||||| | ||||||||||||||||| || |||
Sbjct 1042 AAA-GTTCGCCAAGAAGGCAAGAAGAATCACACAACTTGTACATTTTGTTAC--TTCAAA 1098
Query 1042 -CAAGCTATGAAGTTTATCTATTCTCGTGACT 1072
|||||||||||||||||| ||||||||||||
Sbjct 1099 ACAAGCTATGAAGTTTATCCATTCTCGTGACT 1130
Score = 152 bits (82), Expect = 5e-36
Identities = 99/107 (93%), Gaps = 1/107 (1%)
Strand=Plus/Plus
Query 8 AGAAGAAAAAGAAATCGCGATTTTATAACGCCATTGTTTGAGGAAACTCCTAATCCATTC 67
|||||| ||||||||||||||||||||||||||||||||||||| | || ||||| |||
Sbjct 1 AGAAGAGGAAGAAATCGCGATTTTATAACGCCATTGTTTGAGGAATCACC-AATCCTTTC 59
Query 68 TCAAACCCTAGTTACTTCCTTCTCGAACGTTCCTCGATATTCCCGCG 114
|||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 60 TCAAACCCTAATTACTTCCTTGTCGAACGTTCCTCGATATTCCCGCG 106
> Ahg488066 jgi|Araly1|488066|fgenesh2_kg.6__1200__AT5G12230.1
Length=1274
Score = 442 bits (239), Expect = 3e-123
Identities = 432/523 (83%), Gaps = 22/523 (4%)
Strand=Plus/Plus
Query 234 GAGCG-TT-AAGTTTGGAGGTCCTAGAGAATTGGGTGGTGC-ACTAGATCTTATAACACA 290
||||| || || ||||||||||| ||||| ||| ||||||| | ||||||||| | ||
Sbjct 287 GAGCGTTTAAAATTTGGAGGTCCAAGAGAGTTGTGTGGTGCTGC-GGATCTTATATCTCA 345
Query 291 ATAC-AAGTTGTTGCCACACCATGAATTCTTTTGCAAGAGATCACTTCCAGAGTCACTGT 349
|| | || | | ||| ||||||||||||||||||||||| ||| ||||| | || || |
Sbjct 346 ATTCAAACTAG-TGCAACACCATGAATTCTTTTGCAAGAAATCCCTTCCCGTCTCTCTAT 404
Query 350 CAGATGCTCATTATCTTCATAATTTGGTTGGAGACACAGAGATTAGAAAAGGAGAAGGAA 409
||||| | ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||
Sbjct 405 CAGATTCCCATTATCTTCATAATGTGGTTGGGGACACAGAGATCAGAAAAGGAGAAGGAA 464
Query 410 TGCAATTAGATCAGCTTATTCCTAATGCAT--CACTTAGTAGCCGAGATACGAATGCTCG 467
||||||||||||||||||||| | |||| ||| || ||||| || || | || |||
Sbjct 465 TGCAATTAGATCAGCTTATTCAGA--GCATATCAC--AG-AGCCGGGAGACTACTGTTCG 519
Query 468 CATCCAACCTTTTGTTCTTGATGAACTTAAGGAGGCTTTTGAGCTTAATGATAC-AGCTC 526
|||||||||||||| | | ||||| |||||||| |||| | || ||||||| | |||
Sbjct 520 CATCCAACCTTTTGATATAGATGAGCTTAAGGAATCTTTCCAACTAAATGATATGA-CTC 578
Query 527 CTGTTGAATTGCCTCCAGCAGAGAAGGGAGCTCCTACCACTGTATCAAAATCAAAAAGTG 586
|||||||| | |||||||||||||||||||||||||| | | || || ||||||||||
Sbjct 579 CTGTTGAACTACCTCCAGCAGAGAAGGGAGCTCCTACAATTCCGTCTAAGTCAAAAAGTG 638
Query 587 AGTCAAAAGATAAGGATAGGAAACATA-GAAAACATAAAGACAAG-A-A-GGAGAAAGAT 642
|||| ||||||||||| ||||| |||| |||| || | |||| | | | ||| ||||||
Sbjct 639 AGTCGAAAGATAAGGACAGGAAGCATAAGAAA-CACAGGGACAGGGATAAGGACAAAGAT 697
Query 643 AGGGAACATAAGAAGCACAAGCACAAGCataaagataggatcaaagataaggataaagac 702
|| || ||||||||||| || ||||||||||||||||| | ||||||||| |||||||||
Sbjct 698 AGAGAGCATAAGAAGCATAAACACAAGCATAAAGATAGAAGCAAAGATAAAGATAAAGAC 757
Query 703 aaggatcgagacaaaaagaagga-aaaaagTGGACACCATGAT 744
||||| ||||||| ||||||||| ||||| ||| |||||||||
Sbjct 758 AAGGACCGAGACAGAAAGAAGGACAAAAA-TGGCCACCATGAT 799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39914694099
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5