BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19485.1
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488841 jgi|Araly1|488841|fgenesh2_kg.6__1975__AT5G19485.1 2630 0.0
> Ahg488841 jgi|Araly1|488841|fgenesh2_kg.6__1975__AT5G19485.1
Length=1807
Score = 2630 bits (1424), Expect = 0.0
Identities = 1711/1841 (93%), Gaps = 53/1841 (3%)
Strand=Plus/Plus
Query 3 AACGACCCGTCGGATCCAAAAGAAAGAAACAAGCGGGTTAAATTGATATCGTCTTCGTCT 62
|||||||||||||||||||||| |||| | ||||||||| |||||||| | |||||
Sbjct 1 AACGACCCGTCGGATCCAAAAGTAAGAGAGAAGCGGGTTTAATTGATA----C--CGTCT 54
Query 63 ACCGTTTCTCAAAATCAAAACCCCAGAAAGCAGAAACCTCTCTTCTTCGTCTTCTCTCGT 122
|| ||| |||||||||| ||| ||||||||||||||||||||| || ||| |
Sbjct 55 -TCG--TCT-AAAATCAAAA-CCC------CAGAAACCTCTCTTCTTCGTC-TC-CTCAT 101
Query 123 CAATTCAGCTGCGACAATGGATTTCCAGGTCGTGATTCTAGCCGGCGGATTCTCTAGTTA 182
|||||||| ||||| ||||||||| |||||||||||||| ||||| |||||||| ||| |
Sbjct 102 CAATTCAGTTGCGATAATGGATTTTCAGGTCGTGATTCTCGCCGGTGGATTCTCCAGTAA 161
Query 183 TCTTGTTCCCTTAGTCGCCAAGGAAGTTCCTAAGGCGTTGCTTCCCGTAGCGAATCGTCC 242
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 162 TCTTGTTCCCTTAGTCTCCAAGGAAGTTCCTAAGGCGTTGCTTCCGGTAGCGAATCGTCC 221
Query 243 GGTGTTGTCTTACGTTCTGGATCTTCTCGAGAGTAGTAATCTCAAGGATCTGATCGTCGT 302
|||||| |||| |||| ||||||| |||||||| | ||||||||||||||||||||||||
Sbjct 222 GGTGTTATCTTTCGTTTTGGATCTGCTCGAGAGCAATAATCTCAAGGATCTGATCGTCGT 281
Query 303 TGTTGAAGGGGAAGATGCTGCTTTGAAAGTTGGTGGATGGATTTCTTCTGCTTGTGTTGA 362
||||||||| |||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 282 TGTTGAAGGAGAAGATGCCGCATTGAAAGTTGGTGGATGGATATCTTCTGCTTGTGTTGA 341
Query 363 TCGTTTACATGTTGAGGTTGCTGCTGTTGCTGAGAATGTTGGAACTGCTGGGGCACTCAG 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 TCGTTTACATGTTGAGGTTGCTGCTGTTGCTGAGAATGTTGGAACTGCTGGGGCACTCAG 401
Query 423 GGCAATTGCACACCACTTAACTGCCAAAGACATTTTGATCGTAAGTGGAGACATTGTTTC 482
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 402 GGCAATTGCACACCACTTAACTGCCAAAGACATTTTGATTGTAAGTGGAGACATTGTTTC 461
Query 483 TGATATTCCTCCTGGTGCTGTTGCCGCCACTCATAGAAGGCATGATGCAGCAGTGACTGT 542
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 462 TGATATTCCTCCTGGTGCTGTTGCCGCCACTCATAGAAGGCATGATGCAGCAGTCACTGT 521
Query 543 TATGCTTTGTGCTCAACCTGTCAGTGGGCCATCAGAATCAGGAGGTTCTGGTGGGAAAGA 602
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 522 AATGCTTTGTGCTCAACCTGTCAGTGGGCCATCAGAATCCGGGGGTTCTGGTGGGAAAGA 581
Query 603 TAAAACCAAAAAACCTGCTTGCGATGATATCATAGGGCTTGATTCCTTGAAACAGTTCTT 662
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 582 TAAAACCAAAAAACCTGCTTGCGATGATATCATAGGGCTTGATTCCTTGAAACAATTCTT 641
Query 663 GTTATACATAGCCAAAGGTACTGAGATTAAGAAAGATACCCGAGTAAAAAAGAGCATTCT 722
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 642 GTTATACATAGCCAAAGGGGCTGAGATTAAGAAAGATACGCGAGTAAAAAAGAGCATTCT 701
Query 723 CTGTGCGGCTGGCAAGATGGAAATTCGATCAGATCTGATGGATTCTCATATATATGCCTT 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 702 CTGTGCGGCTGGCAAGATGGAAATTCGATCAGATCTGATGGATTCTCATATATATGCCTT 761
Query 783 CAAGAGAGCAGTTCTGCAGGAAGTTTTGGATCAAAAACCTGCTTTTAGGAGCCTAAAACA 842
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 762 CAAGAGATCAGTTCTGCAGGAAGTTTTGGATCAAAAACCTGCTTTTCGGAGCCTAAAAGA 821
Query 843 GGATGTACTACCGTATCTTGTTCGTACACAGCTGAGATCAGATG-TCTTCTCTGACCAAA 901
|||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 822 GGATGTACTACCATATCTTGTTCGTACACAGCTGAGATCAGA-GATCTTCTCTGACCAAA 880
Query 902 GTAATGTAGAAGAAAATGGGAATGGAAATGGAAAAAATAATATGCAGAACAACGAGGTGG 961
||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct 881 ATAATGTAGAAGAAAACGGAAATGGAAATGGAAAGAATAATATGCAGAACAACGAGGTGG 940
Query 962 TCTTGTCTCAAATTCTCTCCAACGCATCCATGCCAAGCTTTCATCAAGTCTATGAATCAG 1021
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 941 TCTTGTCTCAAATTCTCTCCAACGCATCTTTGCCAAGCTTTCATCAAGTCTATGAATCAG 1000
Query 1022 GTCTGGGTACCCGGAAAACCCATAAATGCTGTGTTTATATAGCGGATGAAAGTAAGTATT 1081
|||| | || ||| |||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1001 GTCTTGATAGCCGAAAAACCAATAAATGCTGTGTTTATATAGCGGATGAAAGTAAATATT 1060
Query 1082 TCGTCCGCTTGAATAGCATTCAAGCCTTCATGGACGTAAACAGAGATGTTATTGGTGAAT 1141
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1061 TCGTCCGCTTGAATAGCATTCAAGCCTTTATGGACGTAAACAGAGATGTTATTGGTG-AT 1119
Query 1142 -CAAACCACCTATCTGGATACTCCTTTTCTGCTCATCACAACATTGTCCACCCATCAGCT 1200
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 GCAAACCACCTATCTGGATACTCCTTTTCTGCTCATCACAACATTGTCCACCCATCAGCT 1179
Query 1201 GAGCTTGGATCGAAAACCACAGTTGGACCTCATTGTATGCTTGGAGAAGGCTCTCAAGTC 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 GAGCTTGGATCGAAAACCACAGTTGGACCTCATTGTATGCTTGGAGAAGGCTCTCAAGTC 1239
Query 1261 GGTGATAAATGCAGTGTCAAAAGATCTGTAATTGGGAGACATTGCCGGATAGGCTCCAAT 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1240 GGTGATAAATGCAGTGTCAAAAGATCTGTAATTGGGAGACATTGCCGGATAGGCTCCAAT 1299
Query 1321 GTGAAGATTGTTAATTCAGTTGTGATGGACCATGCCACAATTGGAGACGGATGTTCAATA 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 GTGAAGATTGTTAATTCAGTTGTGATGGACCATGCCACAATTGGAGACGGATGTTCAATA 1359
Query 1381 CAAGGCTCAGTCATTTGCAGCAACGCACAGCTTCAAGAGCGTGTTACTCTAAGAGACTGC 1440
|| ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 1360 CAGGGCTCAGTCATTTGCAGTAACGCACAACTTCAAGAGCGTGTTACTCTGAGAGACTGC 1419
Query 1441 CAAGTGGAAGCAGGGTATGTTGTTTGTGCCGGGAGTGAGCACAAAGGAGAGACCTTTGCT 1500
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1420 CAAGTGGAAGCAGGGTATGTAGTTTGTGCCGGGAGTGAGCACAAGGGAGAGACCTTTGCT 1479
Query 1501 AGAAAATGAAAAGGAAGGATAAGCA-A--A-TGAGG---TCACATCTTGGAACGCTTTTT 1553
|||||||||||||||||| |||||| | | ||||| |||||||||||||| |||||
Sbjct 1480 AGAAAATGAAAAGGAAGGTTAAGCATATGAATGAGGAGGTCACATCTTGGAAC--TTTTT 1537
Query 1554 TAAAATGAAAAGCAGCATTACTTAGTCATTCGTTTGGTAGGAGAGAAGAGTGTGAAGGAT 1613
|| |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1538 CAA--TGAAAAGCAGCATTTCTTAGTCGTTCGTTTGGTATGAGAGAAGAGTGTGAAGGAT 1595
Query 1614 TGGAAAGTTTCCCAC--TAAGGGTTTTGT--T---G---ATTAAGAGTTTGAGATTTTCC 1663
||||||||| ||||| |||||||||||| | | ||||| |||||||||||||||
Sbjct 1596 TGGAAAGTTCCCCACCCTAAGGGTTTTGTACTTTAGTTGATTAAAAGTTTGAGATTTTCC 1655
Query 1664 GTTAGTATCTTTTACTGATAGAGTTTGATCTTTTGCTATTCATTACATATACATGAAGTC 1723
|||||||| |||| |||||||||||| ||||||| || ||||||||||||| |||| ||
Sbjct 1656 GTTAGTATGTTTTGCTGATAGAGTTTAATCTTTTACTGTTCATTACATATATATGACGTT 1715
Query 1724 TTGAAACACTTTGTCAGCCACTGACCCTTCTCTCTGTTCCGTTGGTTATATTACATATGT 1783
||||||| |||||||||||||||||||||| |||| | ||||||||| | | | | ||
Sbjct 1716 TTGAAACTCTTTGTCAGCCACTGACCCTTC-CTCTCT-CCGTTGGTT-T-TC-C-T--GT 1767
Query 1784 CtttttttGTTCTTCTCATTATTTACTCTTTTGTTCGAGAT 1824
||||||||||||| |||||| || |||||||||||||||||
Sbjct 1768 CTTTTTTTGTTCTCCTCATTGTT-ACTCTTTTGTTCGAGAT 1807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68486260510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5