BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G19485.1 Length=1824 Score E Sequences producing significant alignments: (Bits) Value Ahg488841 jgi|Araly1|488841|fgenesh2_kg.6__1975__AT5G19485.1 2630 0.0 > Ahg488841 jgi|Araly1|488841|fgenesh2_kg.6__1975__AT5G19485.1 Length=1807 Score = 2630 bits (1424), Expect = 0.0 Identities = 1711/1841 (93%), Gaps = 53/1841 (3%) Strand=Plus/Plus Query 3 AACGACCCGTCGGATCCAAAAGAAAGAAACAAGCGGGTTAAATTGATATCGTCTTCGTCT 62 |||||||||||||||||||||| |||| | ||||||||| |||||||| | ||||| Sbjct 1 AACGACCCGTCGGATCCAAAAGTAAGAGAGAAGCGGGTTTAATTGATA----C--CGTCT 54 Query 63 ACCGTTTCTCAAAATCAAAACCCCAGAAAGCAGAAACCTCTCTTCTTCGTCTTCTCTCGT 122 || ||| |||||||||| ||| ||||||||||||||||||||| || ||| | Sbjct 55 -TCG--TCT-AAAATCAAAA-CCC------CAGAAACCTCTCTTCTTCGTC-TC-CTCAT 101 Query 123 CAATTCAGCTGCGACAATGGATTTCCAGGTCGTGATTCTAGCCGGCGGATTCTCTAGTTA 182 |||||||| ||||| ||||||||| |||||||||||||| ||||| |||||||| ||| | Sbjct 102 CAATTCAGTTGCGATAATGGATTTTCAGGTCGTGATTCTCGCCGGTGGATTCTCCAGTAA 161 Query 183 TCTTGTTCCCTTAGTCGCCAAGGAAGTTCCTAAGGCGTTGCTTCCCGTAGCGAATCGTCC 242 |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 162 TCTTGTTCCCTTAGTCTCCAAGGAAGTTCCTAAGGCGTTGCTTCCGGTAGCGAATCGTCC 221 Query 243 GGTGTTGTCTTACGTTCTGGATCTTCTCGAGAGTAGTAATCTCAAGGATCTGATCGTCGT 302 |||||| |||| |||| ||||||| |||||||| | |||||||||||||||||||||||| Sbjct 222 GGTGTTATCTTTCGTTTTGGATCTGCTCGAGAGCAATAATCTCAAGGATCTGATCGTCGT 281 Query 303 TGTTGAAGGGGAAGATGCTGCTTTGAAAGTTGGTGGATGGATTTCTTCTGCTTGTGTTGA 362 ||||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||| Sbjct 282 TGTTGAAGGAGAAGATGCCGCATTGAAAGTTGGTGGATGGATATCTTCTGCTTGTGTTGA 341 Query 363 TCGTTTACATGTTGAGGTTGCTGCTGTTGCTGAGAATGTTGGAACTGCTGGGGCACTCAG 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 342 TCGTTTACATGTTGAGGTTGCTGCTGTTGCTGAGAATGTTGGAACTGCTGGGGCACTCAG 401 Query 423 GGCAATTGCACACCACTTAACTGCCAAAGACATTTTGATCGTAAGTGGAGACATTGTTTC 482 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 402 GGCAATTGCACACCACTTAACTGCCAAAGACATTTTGATTGTAAGTGGAGACATTGTTTC 461 Query 483 TGATATTCCTCCTGGTGCTGTTGCCGCCACTCATAGAAGGCATGATGCAGCAGTGACTGT 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 462 TGATATTCCTCCTGGTGCTGTTGCCGCCACTCATAGAAGGCATGATGCAGCAGTCACTGT 521 Query 543 TATGCTTTGTGCTCAACCTGTCAGTGGGCCATCAGAATCAGGAGGTTCTGGTGGGAAAGA 602 |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 522 AATGCTTTGTGCTCAACCTGTCAGTGGGCCATCAGAATCCGGGGGTTCTGGTGGGAAAGA 581 Query 603 TAAAACCAAAAAACCTGCTTGCGATGATATCATAGGGCTTGATTCCTTGAAACAGTTCTT 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 582 TAAAACCAAAAAACCTGCTTGCGATGATATCATAGGGCTTGATTCCTTGAAACAATTCTT 641 Query 663 GTTATACATAGCCAAAGGTACTGAGATTAAGAAAGATACCCGAGTAAAAAAGAGCATTCT 722 |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 642 GTTATACATAGCCAAAGGGGCTGAGATTAAGAAAGATACGCGAGTAAAAAAGAGCATTCT 701 Query 723 CTGTGCGGCTGGCAAGATGGAAATTCGATCAGATCTGATGGATTCTCATATATATGCCTT 782 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 702 CTGTGCGGCTGGCAAGATGGAAATTCGATCAGATCTGATGGATTCTCATATATATGCCTT 761 Query 783 CAAGAGAGCAGTTCTGCAGGAAGTTTTGGATCAAAAACCTGCTTTTAGGAGCCTAAAACA 842 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 762 CAAGAGATCAGTTCTGCAGGAAGTTTTGGATCAAAAACCTGCTTTTCGGAGCCTAAAAGA 821 Query 843 GGATGTACTACCGTATCTTGTTCGTACACAGCTGAGATCAGATG-TCTTCTCTGACCAAA 901 |||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 822 GGATGTACTACCATATCTTGTTCGTACACAGCTGAGATCAGA-GATCTTCTCTGACCAAA 880 Query 902 GTAATGTAGAAGAAAATGGGAATGGAAATGGAAAAAATAATATGCAGAACAACGAGGTGG 961 ||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||| Sbjct 881 ATAATGTAGAAGAAAACGGAAATGGAAATGGAAAGAATAATATGCAGAACAACGAGGTGG 940 Query 962 TCTTGTCTCAAATTCTCTCCAACGCATCCATGCCAAGCTTTCATCAAGTCTATGAATCAG 1021 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 941 TCTTGTCTCAAATTCTCTCCAACGCATCTTTGCCAAGCTTTCATCAAGTCTATGAATCAG 1000 Query 1022 GTCTGGGTACCCGGAAAACCCATAAATGCTGTGTTTATATAGCGGATGAAAGTAAGTATT 1081 |||| | || ||| |||||| |||||||||||||||||||||||||||||||||| |||| Sbjct 1001 GTCTTGATAGCCGAAAAACCAATAAATGCTGTGTTTATATAGCGGATGAAAGTAAATATT 1060 Query 1082 TCGTCCGCTTGAATAGCATTCAAGCCTTCATGGACGTAAACAGAGATGTTATTGGTGAAT 1141 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || Sbjct 1061 TCGTCCGCTTGAATAGCATTCAAGCCTTTATGGACGTAAACAGAGATGTTATTGGTG-AT 1119 Query 1142 -CAAACCACCTATCTGGATACTCCTTTTCTGCTCATCACAACATTGTCCACCCATCAGCT 1200 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1120 GCAAACCACCTATCTGGATACTCCTTTTCTGCTCATCACAACATTGTCCACCCATCAGCT 1179 Query 1201 GAGCTTGGATCGAAAACCACAGTTGGACCTCATTGTATGCTTGGAGAAGGCTCTCAAGTC 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1180 GAGCTTGGATCGAAAACCACAGTTGGACCTCATTGTATGCTTGGAGAAGGCTCTCAAGTC 1239 Query 1261 GGTGATAAATGCAGTGTCAAAAGATCTGTAATTGGGAGACATTGCCGGATAGGCTCCAAT 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1240 GGTGATAAATGCAGTGTCAAAAGATCTGTAATTGGGAGACATTGCCGGATAGGCTCCAAT 1299 Query 1321 GTGAAGATTGTTAATTCAGTTGTGATGGACCATGCCACAATTGGAGACGGATGTTCAATA 1380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1300 GTGAAGATTGTTAATTCAGTTGTGATGGACCATGCCACAATTGGAGACGGATGTTCAATA 1359 Query 1381 CAAGGCTCAGTCATTTGCAGCAACGCACAGCTTCAAGAGCGTGTTACTCTAAGAGACTGC 1440 || ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| Sbjct 1360 CAGGGCTCAGTCATTTGCAGTAACGCACAACTTCAAGAGCGTGTTACTCTGAGAGACTGC 1419 Query 1441 CAAGTGGAAGCAGGGTATGTTGTTTGTGCCGGGAGTGAGCACAAAGGAGAGACCTTTGCT 1500 |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 1420 CAAGTGGAAGCAGGGTATGTAGTTTGTGCCGGGAGTGAGCACAAGGGAGAGACCTTTGCT 1479 Query 1501 AGAAAATGAAAAGGAAGGATAAGCA-A--A-TGAGG---TCACATCTTGGAACGCTTTTT 1553 |||||||||||||||||| |||||| | | ||||| |||||||||||||| ||||| Sbjct 1480 AGAAAATGAAAAGGAAGGTTAAGCATATGAATGAGGAGGTCACATCTTGGAAC--TTTTT 1537 Query 1554 TAAAATGAAAAGCAGCATTACTTAGTCATTCGTTTGGTAGGAGAGAAGAGTGTGAAGGAT 1613 || |||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| Sbjct 1538 CAA--TGAAAAGCAGCATTTCTTAGTCGTTCGTTTGGTATGAGAGAAGAGTGTGAAGGAT 1595 Query 1614 TGGAAAGTTTCCCAC--TAAGGGTTTTGT--T---G---ATTAAGAGTTTGAGATTTTCC 1663 ||||||||| ||||| |||||||||||| | | ||||| ||||||||||||||| Sbjct 1596 TGGAAAGTTCCCCACCCTAAGGGTTTTGTACTTTAGTTGATTAAAAGTTTGAGATTTTCC 1655 Query 1664 GTTAGTATCTTTTACTGATAGAGTTTGATCTTTTGCTATTCATTACATATACATGAAGTC 1723 |||||||| |||| |||||||||||| ||||||| || ||||||||||||| |||| || Sbjct 1656 GTTAGTATGTTTTGCTGATAGAGTTTAATCTTTTACTGTTCATTACATATATATGACGTT 1715 Query 1724 TTGAAACACTTTGTCAGCCACTGACCCTTCTCTCTGTTCCGTTGGTTATATTACATATGT 1783 ||||||| |||||||||||||||||||||| |||| | ||||||||| | | | | || Sbjct 1716 TTGAAACTCTTTGTCAGCCACTGACCCTTC-CTCTCT-CCGTTGGTT-T-TC-C-T--GT 1767 Query 1784 CtttttttGTTCTTCTCATTATTTACTCTTTTGTTCGAGAT 1824 ||||||||||||| |||||| || ||||||||||||||||| Sbjct 1768 CTTTTTTTGTTCTCCTCATTGTT-ACTCTTTTGTTCGAGAT 1807 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68486260510 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5