BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19490.1
Length=795
Score E
Sequences producing significant alignments: (Bits) Value
Ahg893880 jgi|Araly1|893880|Al_scaffold_0006_1876 915 0.0
> Ahg893880 jgi|Araly1|893880|Al_scaffold_0006_1876
Length=699
Score = 915 bits (495), Expect = 0.0
Identities = 649/719 (90%), Gaps = 28/719 (4%)
Strand=Plus/Plus
Query 85 ATGGCAGTCCCTCTTCTTGTTTCTAAAGCTTTGGAGCTGTTTTTACAAGACTTGTGTAAT 144
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCGGTCCCTCTTCTTGTTTCTAAAGCTTTGGAGCTATTTTTACAAGACTTGTGTAAT 60
Query 145 CACACGTATGATGTAACTCTAAGCCGAGGTGCTAAAACTGTCAACGCCTTTCATTTGAAG 204
||||| |||||||||||||| |||||||||| |||||||||||| ||||||||||||||
Sbjct 61 CACACATATGATGTAACTCTCCGCCGAGGTGCAAAAACTGTCAACTCCTTTCATTTGAAG 120
Query 205 CAGTGTGTGCAAGCGACTAATGTCTTTGATTTTCTAAGAGACACTGTCGCTAAAGTTCCT 264
||||||||||| || |||| ||||||||||||||||||| ||||| | ||||||||||
Sbjct 121 CAGTGTGTGCACGCCTTTAATATCTTTGATTTTCTAAGAGAGACTGTTGGTAAAGTTCCT 180
Query 265 GATTTGGGTGGCTCAGACACTGAAGACCAATCAGCTACCAAAAGAAGGAAAGTTGTTGAT 324
|||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GATTTGGGTGGCTCTGATGCTGAAGACCAATCAGCTACCAAAAGAAGGAAAGTAGTTGAT 240
Query 325 GGAAGTAGTTGCAACGATGAAGATATGATAAAGACCACTCAAATGCATGAGGTCAAACAT 384
| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 GAAAGAAGTTGCAACGATGAAGATATGACGAAGACCACTCAAATGCATGAGGTCAAACAT 300
Query 385 ACTAGCTGTGGCAGAGGAAGGCGAGGTAGAGGCCGCGGACGAAGTAGTGGAAGAACAGGA 444
|||||| |||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 301 ACTAGCGGTGGCAGAGGAAGGCGAGGTAGAGGCTGCGGACGAGGTGGTGGAAGAACAGGA 360
Query 445 AGTGGGCTGTCTCTAAAATTTGAAGAAGATTTAGAAGACGGTTCTCCCGAAAGCAGCAGG 504
|||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 361 AGTGGGCTGTCTCTAAAATTTGAAGAAGAT---G--G----TTCTCCCGAAAGCAGCAGG 411
Query 505 ACCCCGTCTCCCGAAAACGGGAGCCTTTCTCACGACGATACATCTTGGAAGAAAGTTGCA 564
|||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| |||
Sbjct 412 ACCCCGTCTCCCGAAATCGGGAGCCTTTCTCATGACGATATATCTTGGAAGAAAGTCGCA 471
Query 565 TCACACAACAATCATCATAGTAGTAACTCAGAGGTAAAAGTAAGGAACTTCGATCTTAAT 624
||||||||||||||| | ||| | ||||| |||||||||||||||||| |||||||||
Sbjct 472 TCACACAACAATCAT-A--GTA--A-CTCAGTGGTAAAAGTAAGGAACTTTGATCTTAAT 525
Query 625 GTTGAATTAGATGAGAATGGAGACA-ATGCTACATGGCTGGAAACA-CAGCTAGAGAGAA 682
|||||||||||||||||||||||| | ||||| |||||||| | | | ||||||| |||
Sbjct 526 GTTGAATTAGATGAGAATGGAGACTCA-GCTACTTGGCTGGACAGAGC-GCTAGAGGGAA 583
Query 683 GTCCAGATTACCCGTTG--G-AGATTAACGAAATGAAAATAGATCCTGATGATCAACAAC 739
||||||||| |||||| | ||||||||||||||||||||||||||||| |||||||
Sbjct 584 GTCCAGATTGGCCGTTGTTGGAGATTAACGAAATGAAAATAGATCCTGAT---CAACAAC 640
Query 740 AGGCTAGT-G--CTAGTGACGAGGAAGATTATGATGAAGAAAGCATAGACCAAGAGTGA 795
|||||||| | ||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 641 AGGCTAGTAGTGCTAATGATGAGGAAGATTATGATGAAGAAAGCATAGACCAAGAGTGA 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29354646090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5