BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G19500.1
Length=1831
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941500 jgi|Araly1|941500|scaffold_602044.1 2401 0.0
Ahg488844 jgi|Araly1|488844|fgenesh2_kg.6__1978__AT5G19510.1 399 3e-110
Ahg940697 jgi|Araly1|940697|scaffold_601241.1 126 5e-28
> Ahg941500 jgi|Araly1|941500|scaffold_602044.1
Length=1555
Score = 2401 bits (1300), Expect = 0.0
Identities = 1473/1557 (95%), Gaps = 9/1557 (1%)
Strand=Plus/Plus
Query 52 TCAGACAAACACAGACATGTCTGTGTCTCTAAGCTACACTTGTCTTCTTAGATTACCCAC 111
||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 5 TCAGACAAACACAGAGATGTCTGTGTCTCTAAGTTACACTTGTCTTCTTCGATTACCCAC 64
Query 112 CTTTTCAGTTCCAACGAAACCCATTAGTT-TCAATGGACCTCTCCCTTTTTATCTACCAA 170
|||||||||||||||||||||| || || ||| |||||||||||||||| || ||||||
Sbjct 65 TTTTTCAGTTCCAACGAAACCCA-TAATTCTCAGTGGACCTCTCCCTTTTCATGTACCAA 123
Query 171 GATCTCATATTTCCTCATCTTGTTTTGGTTTCAAATCAAACCCATTCATAAGAACTCAGA 230
|||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct 124 GATCTCATATTTCCTCATCTCGTTTTGGTTTCAATTCAAACCCATTCTTAAGAACTCAGA 183
Query 231 CCCCAAGATTCTTCAAGTGTTTGCCTCAGAGAGTGTCTGATGAACGCAGAGAAACACAAG 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 CCCCAAGATTCTTCAAGTGTTTGCCTCAGAGAGTGTCTGATGAACGCAGAGAAACACAAG 243
Query 291 TAACAACagaagaagaagaagaagatgaggaagaaaagaTTGTCGTATTTGAGAGGCTCT 350
||||||| | ||||||||||| ||||| ||||||||| ||||||| |||||||||||||
Sbjct 244 TAACAAC-G--GAAGAAGAAGATGATGAAGAAGAAAAGGTTGTCGTTTTTGAGAGGCTCT 300
Query 351 TCTCTAACCTGAATCAATCAACATTGAAGCGAGAATCCGGAAGTTTGTCCAGTGCAATTT 410
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 301 TCTCTAACCTTAATCAATCAACATTGAAGCGAGAGTCCGGAAGTTTGTCCAGCGCAATTT 360
Query 411 TCTTGGTTGCTGGCACTACCGTAGGTGCAGGGATACTTGCGATTCCAGCTGTGACACAAG 470
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCTTGGTCGCTGGCACTACCGTAGGTGCAGGGATACTTGCGATTCCAGCTGTGACACAAG 420
Query 471 AATCAGGTTTTCTAGCCTCTGCAGTCGCCTGCATTCTCTGTTGGGCCTTCATGGTTGTGA 530
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 421 AATCAGGTTTTCTTGCCTCTGCAGTCGCCTGCATTCTCTGTTGGGCTTTCATGGTTGTGA 480
Query 531 CAGGTTTGCTGGTTGCAGAAGTAAATGTCAACACCATGAGTGAACTAGGCTCTGGAGGCG 590
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CAGGTTTGCTGGTTGCTGAAGTAAATGTCAACACCATGAGTGAACTAGGCTCTGGAGGCG 540
Query 591 TATCTCTTGTCTCAATGGCGAAGCGGACTCTTGGGTCTGTTGGAGTTCAAGTTGTTTCTT 650
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 541 TATCTCTCGTCTCAATGGCGGAGCGGACTCTTGGGTCTGTTGGAGTTCAAGTTGTTAGTT 600
Query 651 GGTCTTATCTTCTCATACATTACACCCTTCTTGTGGCTTACATTGCTCGGTCATCAGGCA 710
|||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||
Sbjct 601 GGTCTTATCTTCTCATACATTATACCCTTCTCGTGGCCTACATTGCTCGGTCTTCAGGCA 660
Query 711 TCCTTACCAACTTCCTCGGCATTCCGATATGGGAGAGTGCAACTCTATTCTCACTGATCT 770
||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 661 TCCTTACAAACTTCCTCGGCATTCCAATATGGGAGAGTGCAACTCTGTTCTCACTAATCT 720
Query 771 TCGGAGGCCTTTGCTTCTTTGGAAGCCAGCGATTCATCGGTGCAGCCAATGGAGTTCTGG 830
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 721 TCGGAGGTCTTTGCTTCTTTGGGAGCCAGCGATTCATCGGTGCAGCCAATGGAGTTCTGG 780
Query 831 TGTTTGGAGTAATTGCATCGTTTGCAGCACTCGTGGCAGTTGCAAGTGGAGACTTACACT 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 781 TGTTTGGAGTAATTGCATCGTTTGCAGCACTCGTGGCAGTTGCAAGTGGAGACTTGCACT 840
Query 891 GGGAAGCTCTTCTCAAGGCTAACTTTGAGGCCGTTCCCATGAGTGTACCCATCATTGCTC 950
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
Sbjct 841 GGGAAGCTCTTCTCAAGGCTAACTTTGAGGCCGTTCCCATGAGTATACCTATCATTGCCC 900
Query 951 TGTCATTTGTTTATCAGAATGTGGTGCCGGTTCTCTGCACAGATCTTGAAGGAGACTTGC 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TGTCATTTGTTTATCAGAATGTGGTGCCGGTTCTCTGCACAGATCTTGAAGGAGACTTGC 960
Query 1011 CGAGAGTAAGAACCGCCATCGTTCTTGGCACAGCCATACCACTTGGCTTGTTTCTTGTGT 1070
||| |||||||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 961 CGAAAGTAAGAACCGCGATTGTTCTTGGCACAGCCATACCACTCGGCTTGTTTCTTGTGT 1020
Query 1071 GGGACGCTGTGATTCTTGGATCGTTTCCAGTAGATACTGGGGTGGCTGTTGAGAAGATGG 1130
|| ||| ||| |||||||| |||||||||| ||||||||||||||||| |||||||||||
Sbjct 1021 GGAACGGTGTAATTCTTGGGTCGTTTCCAGCAGATACTGGGGTGGCTGCTGAGAAGATGG 1080
Query 1131 TCGATCCTCTGCAACAATTGAGATCAAGTAGTGTCACTGTCGGTCCGTTTGTGGAAGCAT 1190
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1081 TCGATCCTCTGCAACAATTGAGATCAAGCAGTGTCACTGTCGGTCCTTTTGTGGAAGCAT 1140
Query 1191 TCTCTCTTTTTGCAATCGCAACATCTTATATAGGGTTTGTCTTAGGCCTCTCTGATTTCT 1250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TCTCTCTTTTTGCAATCGCAACATCTTATATAGGGTTTGTCTTAGGCCTCTCTGATTTCT 1200
Query 1251 TCTCTGACTTATTGAAGCT-CCCGAGTGGCCAGAACAAGCCTCTTCTTTACTTGCTTACT 1309
||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1201 TCTCTGACTTATTGAAGCTTCCC-AGTGGCCAGAACAAGCCTCTTCTCTACTTGCTTACT 1259
Query 1310 CTCGTTCCACCGCTTGTTCTGTCCCTACTGGATCCAGAGATTTTCTTCAAGGCCTTAGAT 1369
|| |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1260 CTTGTTCCACCGCTTGTCCTGTCCCTACTGGACCCAGAGATTTTCTTCAAAGCCTTAGAT 1319
Query 1370 TTTGCCGGGACATATGGAGTTCTGGTATTGTTCGGAATCCTCCCAGCAGCAATGTCTTGG 1429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TTTGCCGGGACATATGGAGTTCTGGTATTGTTCGGAATCCTCCCAGCAGCAATGTCTTGG 1379
Query 1430 TCAGATAGGTACATAGTCTCATCATCAACAGTGACAAGATTACCTCAACTTGTTCCCGGA 1489
||||||||||||||||||||||| |||||||||||||||| || ||||||||||| |||
Sbjct 1380 TCAGATAGGTACATAGTCTCATCGCCAACAGTGACAAGATTGCCACAACTTGTTCCAGGA 1439
Query 1490 GGAAAACTCACCCTTTCTCTGGTTATGGGAGCTGCAGGATACGTAATTATTTCTGAAGTA 1549
|||||||||||||||||||| || ||||||||| | |||||||| ||| |||||||||||
Sbjct 1440 GGAAAACTCACCCTTTCTCTTGTCATGGGAGCTTCTGGATACGTGATTCTTTCTGAAGTA 1499
Query 1550 ATAGAGAATTTGTCAAAGTATCTAAAT-GTTTCTTAACAATGATGCAACGGAATAGT 1605
|||||||||| |||| ||| |||| | ||| ||||||||| || ||||||||||||
Sbjct 1500 GTAGAGAATTTTTCAAGGTACCTAAGTAGTT-CTTAACAATAATTCAACGGAATAGT 1555
> Ahg488844 jgi|Araly1|488844|fgenesh2_kg.6__1978__AT5G19510.1
Length=936
Score = 399 bits (216), Expect = 3e-110
Identities = 265/289 (92%), Gaps = 2/289 (1%)
Strand=Plus/Minus
Query 1544 GAAGTAATAGAGAATTTGTCAAAGTATCTAAAT-GTTTCTTAACAATGATGCAACGGAAT 1602
|||||| |||| ||||| |||||||| |||| | | ||||||||||| ||||||||||||
Sbjct 936 GAAGTAGTAGAAAATTTTTCAAAGTACCTAAGTAG-TTCTTAACAATAATGCAACGGAAT 878
Query 1603 AGTAACCATTGAAAATTTAGTGTTATTGTAACATGAAAGCGGTCTTGCAACTAGGAAAGA 1662
|| || |||||| |||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 877 AGAAAGCATTGATAATTTAGTGTTATTGTAACATGAAAGAGGTCTTGCAACTAGAAAAGA 818
Query 1663 AACATTTCGGTAAACAACACAAACGAAAACAAAACTTGAAATTCAGATATGTTTCGGTAA 1722
||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||
Sbjct 817 AACATCTCGGTAAACAACACAAACGAAAACAAAACTTGAAAACCAAATATGTTTTTGTAA 758
Query 1723 GGAGAAATTTGAAGTCTCTAAATCTTGTTGAAAGCGACAATGTCACAACTCTGGATGTAC 1782
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 757 GGAGAGGTTTGAAGTCTCTAAATCTTGTTGAATGCGACAATGTCACAACTCTGGATGTAC 698
Query 1783 TCGTTGTTAGGCTCTGAGGTGAGGAAGTCTTCAATGAGGTTGTCCGGGG 1831
||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 697 TCGTTGTTAGGCTCTGAGGTGAGAAAGTCTTCAATGAGGTTGTCTGGGG 649
> Ahg940697 jgi|Araly1|940697|scaffold_601241.1
Length=736
Score = 126 bits (68), Expect = 5e-28
Identities = 90/100 (90%), Gaps = 4/100 (4%)
Strand=Plus/Minus
Query 1730 TTTGAAGTCTCTAAATCTTGTTGAAAGCGACAATGTC-ACAACTCTGGATGTACTCGTTG 1788
|||| ||||||||||||||||| ||||| |||||||| || ||| |||||||||||||||
Sbjct 726 TTTGGAGTCTCTAAATCTTGTTAAAAGCAACAATGTCGAC-ACTTTGGATGTACTCGTTG 668
Query 1789 TTAGGCTCTGAGGTGAGGAAG-TCTTCAATGAGGTTGTCC 1827
||||||||||||||||| | | ||||||||||| ||||||
Sbjct 667 TTAGGCTCTGAGGTGAG-ATGGTCTTCAATGAGATTGTCC 629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68752892225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5